Wall clock time and date at job start Tue Mar 31 2020 07:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 C 1.53009 * 109.46584 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46639 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99967 * 271.08912 * 5 4 3 7 7 H 1.07996 * 120.00057 * 324.53351 * 6 5 4 8 8 C 1.38811 * 119.99748 * 144.53405 * 6 5 4 9 9 N 1.31616 * 120.00416 * 338.51716 * 8 6 5 10 10 Si 1.86801 * 119.99801 * 158.52236 * 8 6 5 11 11 H 1.48497 * 109.47457 * 89.99968 * 10 8 6 12 12 H 1.48504 * 109.47051 * 209.99910 * 10 8 6 13 13 H 1.48502 * 109.47072 * 329.99642 * 10 8 6 14 14 C 1.46499 * 119.99991 * 91.09043 * 5 4 3 15 15 C 1.50699 * 109.46903 * 89.99708 * 14 5 4 16 16 C 1.39017 * 120.83388 * 90.00071 * 15 14 5 17 17 O 1.35907 * 120.44506 * 0.02562 * 16 15 14 18 18 C 1.42898 * 117.00343 * 179.72282 * 17 16 15 19 19 C 1.38769 * 119.11581 * 179.72307 * 16 15 14 20 20 N 1.31820 * 120.80087 * 0.28062 * 19 16 15 21 21 C 1.31820 * 121.83517 * 359.97282 * 20 19 16 22 22 C 1.38767 * 120.80583 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.44538 * 179.97438 * 22 21 20 24 24 C 1.42903 * 116.99899 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46729 * 300.00446 * 1 2 3 26 26 H 1.08996 * 109.47174 * 59.99523 * 1 2 3 27 27 H 1.08996 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46575 * 240.00087 * 2 1 3 29 29 H 1.08999 * 109.46922 * 120.00026 * 2 1 3 30 30 H 1.09001 * 109.46976 * 60.00189 * 3 2 1 31 31 H 1.08999 * 109.47280 * 299.99808 * 3 2 1 32 32 H 1.08992 * 109.46893 * 60.00168 * 4 3 2 33 33 H 1.08999 * 109.47067 * 299.99830 * 4 3 2 34 34 H 0.96994 * 120.00405 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47363 * 330.00150 * 14 5 4 36 36 H 1.08998 * 109.47211 * 209.99993 * 14 5 4 37 37 H 1.08994 * 109.47235 * 59.99367 * 18 17 16 38 38 H 1.09000 * 109.47354 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.46890 * 299.99498 * 18 17 16 40 40 H 1.07995 * 119.60111 * 180.25306 * 19 16 15 41 41 H 1.08000 * 119.59965 * 180.02562 * 21 20 19 42 42 H 1.09006 * 109.46971 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47065 * 299.99877 * 24 23 22 44 44 H 1.08996 * 109.47117 * 60.00339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2649 3.4774 -1.1854 7 1 4.6310 2.9350 -2.0446 8 6 4.0037 4.8372 -1.2827 9 7 3.1873 5.4135 -0.4261 10 14 4.8107 5.8493 -2.6295 11 1 3.9441 5.8492 -3.8355 12 1 4.9988 7.2439 -2.1553 13 1 6.1307 5.2594 -2.9684 14 6 4.3259 3.5054 1.2688 15 6 5.7569 3.2656 1.6759 16 6 6.7672 4.1310 1.2721 17 8 6.4801 5.2125 0.5008 18 6 7.5735 6.0560 0.1334 19 6 8.0718 3.8794 1.6725 20 7 8.3582 2.8328 2.4210 21 6 7.4285 1.9874 2.8193 22 6 6.1006 2.1706 2.4604 23 8 5.1481 1.2942 2.8747 24 6 5.5824 0.1979 3.6820 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.0045 6.3636 -0.4943 35 1 3.6591 3.1160 2.0382 36 1 4.1566 4.5755 1.1489 37 1 8.3040 5.4781 -0.4326 38 1 7.2071 6.8795 -0.4797 39 1 8.0433 6.4542 1.0327 40 1 8.8622 4.5489 1.3668 41 1 7.7036 1.1419 3.4323 42 1 4.7253 -0.4232 3.9426 43 1 6.3068 -0.3977 3.1266 44 1 6.0461 0.5782 4.5921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232506049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:14 Heat of formation + Delta-G solvation = -23.288872 kcal Electronic energy + Delta-G solvation = -25339.804793 eV Core-core repulsion = 21872.901562 eV Total energy + Delta-G solvation = -3466.903231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39464 -38.50743 -36.79736 -36.20163 -34.04303 -32.00993 -30.89244 -29.35132 -27.86719 -27.54994 -26.60803 -25.89912 -23.80084 -22.02103 -21.90244 -20.68626 -19.78972 -18.01434 -17.09031 -16.67957 -15.92684 -15.72060 -15.49894 -15.07400 -14.70775 -14.62080 -14.28930 -13.68654 -13.43958 -13.23852 -13.23150 -12.89044 -12.39578 -12.25904 -11.98678 -11.88762 -11.70274 -11.23399 -11.21969 -11.07767 -10.91799 -10.83279 -10.71176 -10.50673 -10.34097 -10.19121 -9.87865 -9.79168 -9.53462 -8.97938 -8.37469 -8.03540 -7.78098 -6.50031 -5.69011 -3.20784 1.72106 1.88253 3.29686 3.39890 3.45821 3.49157 4.12498 4.28685 4.59357 4.92464 5.07707 5.23292 5.28969 5.33503 5.41199 5.42527 5.50740 5.53420 5.54615 5.57964 5.60791 5.74310 5.84555 5.89196 6.05470 6.17548 6.27496 6.37779 6.44818 6.54163 6.57160 6.59195 6.78173 6.81568 6.87033 7.11484 7.20838 7.40669 7.66870 7.79942 7.91413 7.92357 8.39489 8.61539 9.28433 9.93422 10.50098 11.32472 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.008845 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.815264 B = 3164.966465 C = 5539.865236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.147 3.853 5 N -0.570 5.570 6 C -0.254 4.254 7 H 0.054 0.946 8 C 0.032 3.968 9 N -0.880 5.880 10 Si 0.887 3.113 11 H -0.292 1.292 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.188 3.812 15 C -0.101 4.101 16 C 0.132 3.868 17 O -0.268 6.268 18 C 0.023 3.977 19 C -0.034 4.034 20 N -0.435 5.435 21 C -0.034 4.034 22 C 0.108 3.892 23 O -0.299 6.299 24 C 0.027 3.973 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.253 0.747 35 H 0.038 0.962 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 -5.949 6.213 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.021 3.979 5 N -0.288 5.288 6 C -0.383 4.383 7 H 0.072 0.928 8 C -0.168 4.168 9 N -0.522 5.522 10 Si 0.718 3.282 11 H -0.219 1.219 12 H -0.215 1.215 13 H -0.205 1.205 14 C 0.062 3.938 15 C -0.113 4.113 16 C 0.083 3.917 17 O -0.178 6.178 18 C -0.073 4.073 19 C -0.192 4.192 20 N -0.146 5.146 21 C -0.193 4.193 22 C 0.059 3.941 23 O -0.211 6.211 24 C -0.068 4.068 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.619 -5.841 6.323 9.769 hybrid contribution 0.162 0.625 -0.873 1.086 sum 4.781 -5.215 5.450 8.931 Atomic orbital electron populations 1.21757 0.96899 1.00254 1.01647 1.21521 0.94961 0.98808 1.00721 1.22127 0.99202 0.93725 1.02001 1.20977 0.91359 0.87204 0.98355 1.43717 1.73105 1.10172 1.01824 1.18911 1.37826 0.91801 0.89789 0.92785 1.24870 0.96480 0.98229 0.97240 1.69906 1.33517 1.10741 1.38046 0.86570 0.79977 0.79878 0.81824 1.21923 1.21470 1.20500 1.19805 0.84628 1.02824 0.86556 1.20418 1.01419 0.92008 0.97430 1.19608 0.92730 0.88285 0.91119 1.86421 1.33448 1.34080 1.63812 1.23042 0.90283 0.94164 0.99800 1.22606 0.94430 0.98938 1.03269 1.67230 1.35934 1.02318 1.09129 1.22503 0.88465 1.01831 1.06468 1.19620 0.88299 0.90708 0.95448 1.86138 1.33371 1.35784 1.65801 1.23012 1.01761 0.88137 0.93915 0.93117 0.92994 0.93844 0.92913 0.93006 0.93012 0.92049 0.94786 0.93820 0.93717 0.94378 0.86730 0.92921 0.88799 0.93089 0.83344 0.83522 0.88452 0.92908 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 4 C 0.15 3.19 5.67 -4.04 -0.02 3.17 16 5 N -0.57 -14.18 2.43 -174.61 -0.42 -14.60 16 6 C -0.25 -6.88 9.48 -15.06 -0.14 -7.02 16 7 H 0.05 1.51 7.92 -52.49 -0.42 1.09 16 8 C 0.03 0.87 4.24 -17.43 -0.07 0.80 16 9 N -0.88 -24.62 11.32 55.49 0.63 -23.99 16 10 Si 0.89 21.45 29.52 -169.99 -5.02 16.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.19 4.53 5.05 -5.19 -0.03 4.50 16 15 C -0.10 -2.19 5.52 -104.04 -0.57 -2.76 16 16 C 0.13 2.75 6.68 -39.10 -0.26 2.48 16 17 O -0.27 -5.69 8.85 -19.45 -0.17 -5.86 16 18 C 0.02 0.36 9.82 101.05 0.99 1.36 16 19 C -0.03 -0.62 10.22 -17.36 -0.18 -0.80 16 20 N -0.44 -8.01 10.35 -12.99 -0.13 -8.14 16 21 C -0.03 -0.59 10.22 -17.36 -0.18 -0.77 16 22 C 0.11 2.04 6.68 -39.10 -0.26 1.78 16 23 O -0.30 -5.11 8.18 -19.43 -0.16 -5.27 16 24 C 0.03 0.31 9.82 101.05 0.99 1.30 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.04 0.90 6.50 -51.93 -0.34 0.56 16 34 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.04 0.90 7.56 -51.93 -0.39 0.51 16 36 H 0.12 3.09 4.84 -51.93 -0.25 2.84 16 37 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 40 H 0.15 2.29 6.31 -52.49 -0.33 1.96 16 41 H 0.15 2.04 6.31 -52.49 -0.33 1.71 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.55 7.68 -51.93 -0.40 0.15 16 44 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -30.42 356.54 -6.59 -37.01 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.01 Total: 1.61 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 0.33 Total: -2.56 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.07 Total: -46.73 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.33 Total: -11.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.42 -6.59 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232506049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.716 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds