Wall clock time and date at job start Tue Mar 31 2020 07:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 C 1.53009 * 109.46584 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46639 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99967 * 271.08912 * 5 4 3 7 7 H 1.07996 * 120.00057 * 324.53351 * 6 5 4 8 8 C 1.38811 * 119.99748 * 144.53405 * 6 5 4 9 9 N 1.31616 * 120.00416 * 338.51716 * 8 6 5 10 10 Si 1.86801 * 119.99801 * 158.52236 * 8 6 5 11 11 H 1.48497 * 109.47457 * 89.99968 * 10 8 6 12 12 H 1.48504 * 109.47051 * 209.99910 * 10 8 6 13 13 H 1.48502 * 109.47072 * 329.99642 * 10 8 6 14 14 C 1.46499 * 119.99991 * 91.09043 * 5 4 3 15 15 C 1.50699 * 109.46903 * 89.99708 * 14 5 4 16 16 C 1.39017 * 120.83388 * 90.00071 * 15 14 5 17 17 O 1.35907 * 120.44506 * 0.02562 * 16 15 14 18 18 C 1.42898 * 117.00343 * 179.72282 * 17 16 15 19 19 C 1.38769 * 119.11581 * 179.72307 * 16 15 14 20 20 N 1.31820 * 120.80087 * 0.28062 * 19 16 15 21 21 C 1.31820 * 121.83517 * 359.97282 * 20 19 16 22 22 C 1.38767 * 120.80583 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.44538 * 179.97438 * 22 21 20 24 24 C 1.42903 * 116.99899 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46729 * 300.00446 * 1 2 3 26 26 H 1.08996 * 109.47174 * 59.99523 * 1 2 3 27 27 H 1.08996 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46575 * 240.00087 * 2 1 3 29 29 H 1.08999 * 109.46922 * 120.00026 * 2 1 3 30 30 H 1.09001 * 109.46976 * 60.00189 * 3 2 1 31 31 H 1.08999 * 109.47280 * 299.99808 * 3 2 1 32 32 H 1.08992 * 109.46893 * 60.00168 * 4 3 2 33 33 H 1.08999 * 109.47067 * 299.99830 * 4 3 2 34 34 H 0.96994 * 120.00405 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47363 * 330.00150 * 14 5 4 36 36 H 1.08998 * 109.47211 * 209.99993 * 14 5 4 37 37 H 1.08994 * 109.47235 * 59.99367 * 18 17 16 38 38 H 1.09000 * 109.47354 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.46890 * 299.99498 * 18 17 16 40 40 H 1.07995 * 119.60111 * 180.25306 * 19 16 15 41 41 H 1.08000 * 119.59965 * 180.02562 * 21 20 19 42 42 H 1.09006 * 109.46971 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47065 * 299.99877 * 24 23 22 44 44 H 1.08996 * 109.47117 * 60.00339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2649 3.4774 -1.1854 7 1 4.6310 2.9350 -2.0446 8 6 4.0037 4.8372 -1.2827 9 7 3.1873 5.4135 -0.4261 10 14 4.8107 5.8493 -2.6295 11 1 3.9441 5.8492 -3.8355 12 1 4.9988 7.2439 -2.1553 13 1 6.1307 5.2594 -2.9684 14 6 4.3259 3.5054 1.2688 15 6 5.7569 3.2656 1.6759 16 6 6.7672 4.1310 1.2721 17 8 6.4801 5.2125 0.5008 18 6 7.5735 6.0560 0.1334 19 6 8.0718 3.8794 1.6725 20 7 8.3582 2.8328 2.4210 21 6 7.4285 1.9874 2.8193 22 6 6.1006 2.1706 2.4604 23 8 5.1481 1.2942 2.8747 24 6 5.5824 0.1979 3.6820 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.0045 6.3636 -0.4943 35 1 3.6591 3.1160 2.0382 36 1 4.1566 4.5755 1.1489 37 1 8.3040 5.4781 -0.4326 38 1 7.2071 6.8795 -0.4797 39 1 8.0433 6.4542 1.0327 40 1 8.8622 4.5489 1.3668 41 1 7.7036 1.1419 3.4323 42 1 4.7253 -0.4232 3.9426 43 1 6.3068 -0.3977 3.1266 44 1 6.0461 0.5782 4.5921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232506049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:14 Heat of formation + Delta-G solvation = -41.479205 kcal Electronic energy + Delta-G solvation = -25340.593585 eV Core-core repulsion = 21872.901562 eV Total energy + Delta-G solvation = -3467.692023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81481 -39.86097 -38.18820 -37.95838 -35.58460 -33.74131 -32.63185 -30.73437 -29.44308 -28.71409 -27.88204 -27.61884 -25.53117 -23.54738 -23.26906 -22.22917 -21.49935 -19.41547 -18.64893 -18.39677 -17.27998 -17.11151 -16.93295 -16.60208 -16.35185 -16.16438 -15.58789 -15.45069 -15.14635 -14.71092 -14.54922 -14.23879 -13.88127 -13.69401 -13.55491 -13.21249 -13.00484 -12.99287 -12.62857 -12.52495 -12.40584 -12.33315 -12.23264 -12.15600 -11.87984 -11.80167 -11.78323 -11.50894 -11.22929 -10.46484 -10.38023 -9.53981 -9.17074 -8.48749 -7.72501 -5.28916 0.30244 0.38017 1.42964 1.45555 1.55271 2.08192 2.57834 2.84600 2.85677 3.41059 3.63983 3.73212 3.82648 3.96702 4.06598 4.20290 4.24086 4.34317 4.36702 4.42081 4.46941 4.47478 4.59051 4.63143 4.67945 4.78859 4.80346 4.91080 4.99257 5.10278 5.11386 5.12766 5.20780 5.29754 5.43706 5.48651 5.56407 5.67446 5.75080 5.90909 6.40358 6.48984 6.57677 6.97536 7.27170 7.96605 8.49726 9.25772 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.008845 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.815264 B = 3164.966465 C = 5539.865236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.118 4.118 4 C 0.148 3.852 5 N -0.584 5.584 6 C -0.263 4.263 7 H 0.040 0.960 8 C 0.002 3.998 9 N -0.905 5.905 10 Si 0.933 3.067 11 H -0.296 1.296 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.203 3.797 15 C -0.138 4.138 16 C 0.120 3.880 17 O -0.303 6.303 18 C 0.013 3.987 19 C -0.033 4.033 20 N -0.437 5.437 21 C -0.028 4.028 22 C 0.114 3.886 23 O -0.320 6.320 24 C 0.015 3.985 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.249 0.751 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -7.594 7.179 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.158 4.158 4 C 0.022 3.978 5 N -0.303 5.303 6 C -0.393 4.393 7 H 0.057 0.943 8 C -0.197 4.197 9 N -0.549 5.549 10 Si 0.762 3.238 11 H -0.224 1.224 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.077 3.923 15 C -0.150 4.150 16 C 0.071 3.929 17 O -0.214 6.214 18 C -0.082 4.082 19 C -0.191 4.191 20 N -0.147 5.147 21 C -0.187 4.187 22 C 0.065 3.935 23 O -0.232 6.232 24 C -0.079 4.079 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.194 0.806 41 H 0.202 0.798 42 H 0.138 0.862 43 H 0.085 0.915 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.101 -7.503 7.303 12.118 hybrid contribution -0.272 1.043 -1.075 1.523 sum 5.829 -6.460 6.228 10.700 Atomic orbital electron populations 1.21729 0.95388 1.01947 1.01221 1.21447 0.96262 0.95583 1.01876 1.21941 0.98117 0.96322 0.99412 1.21038 0.92219 0.85951 0.98563 1.43867 1.74026 1.10947 1.01490 1.18936 1.37757 0.92295 0.90338 0.94257 1.25316 0.96766 0.98739 0.98880 1.70028 1.34777 1.10485 1.39601 0.85852 0.79269 0.79044 0.79588 1.22386 1.20715 1.19889 1.19378 0.86457 1.00610 0.85838 1.20336 1.00133 0.94352 1.00151 1.19809 0.93518 0.88298 0.91324 1.86362 1.36079 1.34771 1.64158 1.23314 0.89645 0.93810 1.01416 1.22940 0.94053 0.99310 1.02798 1.67333 1.36138 1.02367 1.08910 1.23022 0.87429 1.02328 1.05909 1.19646 0.89333 0.90060 0.94474 1.86116 1.33853 1.36745 1.66463 1.23422 1.03525 0.86888 0.94040 0.93269 0.93802 0.91030 0.92173 0.91325 0.94820 0.95307 0.95306 0.92551 0.94173 0.95494 0.89899 0.91579 0.88771 0.90187 0.80588 0.79808 0.86172 0.91528 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.11 -3.48 5.93 30.60 0.18 -3.30 16 3 C -0.12 -4.85 5.54 30.60 0.17 -4.68 16 4 C 0.15 6.53 5.67 86.38 0.49 7.02 16 5 N -0.58 -30.03 2.43 -706.34 -1.71 -31.74 16 6 C -0.26 -14.76 9.48 84.03 0.80 -13.96 16 7 H 0.04 2.28 7.92 -2.91 -0.02 2.26 16 8 C 0.00 0.08 4.24 84.86 0.36 0.44 16 9 N -0.91 -52.62 11.32 21.65 0.25 -52.37 16 10 Si 0.93 44.81 29.52 68.60 2.02 46.83 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 14 C 0.20 10.16 5.05 85.63 0.43 10.59 16 15 C -0.14 -6.05 5.52 -19.49 -0.11 -6.16 16 16 C 0.12 4.95 6.68 22.58 0.15 5.10 16 17 O -0.30 -12.95 8.85 -92.50 -0.82 -13.77 16 18 C 0.01 0.39 9.82 113.37 1.11 1.51 16 19 C -0.03 -1.15 10.22 84.82 0.87 -0.28 16 20 N -0.44 -14.91 10.35 -195.02 -2.02 -16.92 16 21 C -0.03 -0.89 10.22 84.82 0.87 -0.03 16 22 C 0.11 4.16 6.68 22.58 0.15 4.31 16 23 O -0.32 -10.40 8.18 -92.46 -0.76 -11.16 16 24 C 0.02 0.30 9.82 113.37 1.11 1.41 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.06 2.32 6.50 -2.39 -0.02 2.30 16 34 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.03 1.34 7.56 -2.38 -0.02 1.32 16 36 H 0.08 4.71 4.84 -2.39 -0.01 4.70 16 37 H 0.07 1.81 7.68 -2.39 -0.02 1.80 16 38 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.08 1.94 7.68 -2.39 -0.02 1.93 16 40 H 0.18 4.96 6.31 -2.91 -0.02 4.94 16 41 H 0.19 4.32 6.31 -2.91 -0.02 4.30 16 42 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.07 1.14 7.68 -2.39 -0.02 1.12 16 44 H 0.07 1.14 7.68 -2.39 -0.02 1.12 16 Total: -1.00 -68.21 356.54 5.24 -62.97 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.98 Total: 17.37 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 7.30 Total: -1.21 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -3.49 Total: -101.04 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.57 Total: -24.93 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.02 Total: 46.83 kcal Total: -68.21 5.24 -62.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232506049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.491 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds