Wall clock time and date at job start Tue Mar 31 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99664 * 2 1 4 4 C 1.50695 * 109.47429 * 66.04405 * 3 2 1 5 5 H 1.07998 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99927 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99877 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47247 * 89.99989 * 8 6 4 10 10 H 1.48505 * 109.46869 * 209.99876 * 8 6 4 11 11 H 1.48502 * 109.46958 * 329.99322 * 8 6 4 12 12 C 1.46900 * 111.00577 * 236.04313 * 2 1 3 13 13 C 1.50697 * 109.46835 * 293.95615 * 12 2 1 14 14 C 1.41157 * 126.21367 * 90.02331 * 13 12 2 15 15 C 1.34624 * 107.57405 * 179.97438 * 14 13 12 16 16 N 1.37021 * 108.15669 * 0.02562 * 15 14 13 17 17 C 1.34778 * 125.72964 * 179.97438 * 16 15 14 18 18 O 1.21426 * 119.99720 * 180.02562 * 17 16 15 19 19 O 1.34545 * 120.00445 * 0.02644 * 17 16 15 20 20 C 1.45199 * 117.00360 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47168 * 59.99562 * 20 19 17 22 22 C 1.53001 * 109.47111 * 179.97438 * 20 19 17 23 23 C 1.53000 * 109.47076 * 299.99585 * 20 19 17 24 24 C 1.34618 * 126.21321 * 269.97812 * 13 12 2 25 25 H 1.09003 * 109.46707 * 183.95649 * 1 2 3 26 26 H 1.09003 * 109.47243 * 303.95778 * 1 2 3 27 27 H 1.08999 * 109.47075 * 63.95998 * 1 2 3 28 28 H 1.09002 * 109.47110 * 186.04495 * 3 2 1 29 29 H 1.09001 * 109.47175 * 306.03969 * 3 2 1 30 30 H 0.96997 * 119.99549 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47245 * 173.95264 * 12 2 1 32 32 H 1.09001 * 109.46596 * 53.95034 * 12 2 1 33 33 H 1.07997 * 126.21691 * 359.97438 * 14 13 12 34 34 H 1.07996 * 125.92107 * 179.73311 * 15 14 13 35 35 H 1.09003 * 109.46686 * 60.00174 * 21 20 19 36 36 H 1.09000 * 109.47364 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47099 * 300.00568 * 21 20 19 38 38 H 1.09003 * 109.47197 * 60.00495 * 22 20 19 39 39 H 1.09003 * 109.46703 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47016 * 299.99890 * 22 20 19 41 41 H 1.09008 * 109.46883 * 60.00028 * 23 20 19 42 42 H 1.09003 * 109.47503 * 179.97438 * 23 20 19 43 43 H 1.08996 * 109.47225 * 300.00295 * 23 20 19 44 44 H 1.08004 * 125.91459 * 0.03435 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0275 3.3493 1.5288 7 7 1.7142 3.9391 2.6617 8 14 3.0007 4.2759 0.2312 9 1 2.0642 4.9804 -0.6807 10 1 3.8878 5.2669 0.8917 11 1 3.8239 3.3171 -0.5487 12 6 1.9956 -0.7660 -1.1375 13 6 1.6371 -2.2204 -0.9727 14 6 0.4673 -2.8502 -1.4496 15 6 0.5311 -4.1476 -1.0960 16 7 1.7024 -4.3470 -0.4135 17 6 2.1228 -5.5189 0.1027 18 8 3.1833 -5.5774 0.6911 19 8 1.3674 -6.6239 -0.0339 20 6 1.8829 -7.8508 0.5467 21 6 2.0683 -7.6633 2.0538 22 6 0.8937 -8.9901 0.2928 23 6 3.2297 -8.1918 -0.0943 24 6 2.3747 -3.1551 -0.3446 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3633 0.4511 -0.9233 28 1 3.0797 1.3445 -0.1082 29 1 1.5611 1.9273 -0.8310 30 1 1.9887 4.8553 2.8236 31 1 3.0799 -0.6611 -1.1755 32 1 1.5612 -0.3873 -2.0627 33 1 -0.3335 -2.3772 -1.9986 34 1 -0.2142 -4.8996 -1.3087 35 1 1.1088 -7.4204 2.5104 36 1 2.4549 -8.5845 2.4897 37 1 2.7728 -6.8515 2.2349 38 1 0.7613 -9.1239 -0.7808 39 1 1.2810 -9.9113 0.7283 40 1 -0.0655 -8.7470 0.7498 41 1 3.9342 -7.3800 0.0869 42 1 3.6170 -9.1126 0.3418 43 1 3.0976 -8.3253 -1.1680 44 1 3.3304 -2.9933 0.1317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233430078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:38 Heat of formation + Delta-G solvation = -15.407984 kcal Electronic energy + Delta-G solvation = -23665.659653 eV Core-core repulsion = 20199.098163 eV Total energy + Delta-G solvation = -3466.561490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24277 -40.41510 -37.37470 -36.55208 -34.62195 -32.78289 -31.91504 -29.52936 -27.90012 -27.82534 -27.77632 -26.63502 -24.45080 -22.71725 -21.65042 -20.29996 -19.67948 -19.37447 -18.43598 -16.95431 -16.90282 -16.69281 -15.64017 -15.05268 -14.73730 -14.55039 -14.17994 -14.11507 -13.73613 -13.57508 -13.55160 -12.99059 -12.90662 -12.54788 -12.51867 -12.37282 -12.33696 -12.26807 -11.84056 -11.80614 -11.76700 -11.47275 -11.09072 -10.84466 -10.80824 -10.63533 -10.61606 -10.15574 -9.81982 -9.24709 -8.99670 -8.53700 -8.24243 -7.29696 -6.00983 -3.97890 1.20753 1.60633 2.90234 2.93397 3.31340 3.39026 3.41142 3.49444 4.25565 4.32366 4.45744 4.45903 4.87253 4.98530 5.05522 5.07079 5.14248 5.22979 5.28459 5.32613 5.33573 5.42735 5.44496 5.52092 5.58962 5.81487 5.86863 5.91477 5.99825 6.03302 6.08014 6.18727 6.26765 6.34257 6.72478 6.80616 6.86919 6.90707 7.05288 7.23716 7.64934 7.72206 7.97194 8.11660 8.71328 9.08445 9.60827 11.12292 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.002854 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.100003 B = 9809.356290 C =10032.561325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.527 5.527 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.117 3.883 13 C -0.120 4.120 14 C -0.157 4.157 15 C -0.014 4.014 16 N -0.424 5.424 17 C 0.665 3.335 18 O -0.518 6.518 19 O -0.349 6.349 20 C 0.132 3.868 21 C -0.187 4.187 22 C -0.140 4.140 23 C -0.186 4.186 24 C 0.032 3.968 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.010 0.990 28 H 0.029 0.971 29 H -0.016 1.016 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -25.787 -8.666 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.251 5.251 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.012 4.012 13 C -0.125 4.125 14 C -0.180 4.180 15 C -0.134 4.134 16 N -0.127 5.127 17 C 0.423 3.577 18 O -0.404 6.404 19 O -0.263 6.263 20 C 0.096 3.904 21 C -0.244 4.244 22 C -0.197 4.197 23 C -0.243 4.243 24 C -0.088 4.088 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.047 0.953 29 H 0.002 0.998 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.914 -26.223 -7.795 27.373 hybrid contribution 0.194 0.975 -1.262 1.606 sum -0.720 -25.249 -9.057 26.834 Atomic orbital electron populations 1.22263 0.88187 1.00199 1.00473 1.61969 1.07634 1.15986 1.39463 1.20213 0.95237 0.84071 0.97025 1.21047 1.35352 0.97156 1.00948 0.90137 1.24908 0.95822 0.97373 0.95337 1.69900 1.47025 1.13211 1.23971 0.86854 0.80631 0.80044 0.82161 1.20400 1.21220 1.19117 1.20486 1.00024 0.87727 0.92916 1.19783 0.95334 0.95602 1.01809 1.21198 0.99422 0.92919 1.04481 1.22104 0.90208 0.98831 1.02285 1.41692 1.19540 1.06369 1.45111 1.17859 0.81808 0.80802 0.77264 1.90952 1.22351 1.84894 1.42189 1.86344 1.49261 1.17066 1.73660 1.22292 0.94834 0.79797 0.93518 1.22551 1.03836 1.04590 0.93449 1.21872 0.98956 0.95562 1.03343 1.22543 0.96676 1.04007 1.01082 1.21894 1.00462 0.81292 1.05150 0.92953 0.90474 0.97183 0.95342 0.99823 0.92719 0.90572 0.94679 0.83624 0.80967 0.91689 0.90565 0.89423 0.91263 0.89758 0.91159 0.89496 0.90560 0.91842 0.80578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.11 60.07 0.55 1.28 16 2 N -0.53 -11.23 4.74 -245.82 -1.17 -12.39 16 3 C 0.16 3.93 3.79 -4.98 -0.02 3.92 16 4 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 5 H 0.08 2.53 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 8 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.12 2.03 5.46 -4.98 -0.03 2.00 16 13 C -0.12 -1.85 4.96 -104.80 -0.52 -2.37 16 14 C -0.16 -2.06 9.49 -39.75 -0.38 -2.44 16 15 C -0.01 -0.17 10.99 -16.51 -0.18 -0.35 16 16 N -0.42 -5.94 2.84 -67.62 -0.19 -6.14 16 17 C 0.67 9.07 7.83 54.06 0.42 9.49 16 18 O -0.52 -7.82 12.14 -19.22 -0.23 -8.05 16 19 O -0.35 -3.95 9.42 -40.07 -0.38 -4.32 16 20 C 0.13 1.16 1.13 -90.62 -0.10 1.05 16 21 C -0.19 -1.67 8.37 37.16 0.31 -1.36 16 22 C -0.14 -0.82 8.85 37.16 0.33 -0.49 16 23 C -0.19 -1.55 8.37 37.16 0.31 -1.24 16 24 C 0.03 0.49 10.87 -16.52 -0.18 0.31 16 25 H 0.05 0.91 6.33 -51.93 -0.33 0.59 16 26 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.03 0.70 6.99 -51.93 -0.36 0.34 16 29 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 32 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.17 1.61 8.04 -52.49 -0.42 1.18 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.94 5.88 -51.92 -0.31 0.63 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.18 2.64 8.04 -52.48 -0.42 2.22 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -32.53 355.41 -7.48 -40.01 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.08 Total: -1.06 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.11 Total: -3.23 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.58 Total: -45.68 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.61 Total: -12.38 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.53 -7.48 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233430078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.601 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds