Wall clock time and date at job start Tue Mar 31 2020 07:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99664 * 2 1 4 4 C 1.50695 * 109.47429 * 66.04405 * 3 2 1 5 5 H 1.07998 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99927 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99877 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47247 * 89.99989 * 8 6 4 10 10 H 1.48505 * 109.46869 * 209.99876 * 8 6 4 11 11 H 1.48502 * 109.46958 * 329.99322 * 8 6 4 12 12 C 1.46900 * 111.00577 * 236.04313 * 2 1 3 13 13 C 1.50697 * 109.46835 * 293.95615 * 12 2 1 14 14 C 1.41157 * 126.21367 * 90.02331 * 13 12 2 15 15 C 1.34624 * 107.57405 * 179.97438 * 14 13 12 16 16 N 1.37021 * 108.15669 * 0.02562 * 15 14 13 17 17 C 1.34778 * 125.72964 * 179.97438 * 16 15 14 18 18 O 1.21426 * 119.99720 * 180.02562 * 17 16 15 19 19 O 1.34545 * 120.00445 * 0.02644 * 17 16 15 20 20 C 1.45199 * 117.00360 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47168 * 59.99562 * 20 19 17 22 22 C 1.53001 * 109.47111 * 179.97438 * 20 19 17 23 23 C 1.53000 * 109.47076 * 299.99585 * 20 19 17 24 24 C 1.34618 * 126.21321 * 269.97812 * 13 12 2 25 25 H 1.09003 * 109.46707 * 183.95649 * 1 2 3 26 26 H 1.09003 * 109.47243 * 303.95778 * 1 2 3 27 27 H 1.08999 * 109.47075 * 63.95998 * 1 2 3 28 28 H 1.09002 * 109.47110 * 186.04495 * 3 2 1 29 29 H 1.09001 * 109.47175 * 306.03969 * 3 2 1 30 30 H 0.96997 * 119.99549 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47245 * 173.95264 * 12 2 1 32 32 H 1.09001 * 109.46596 * 53.95034 * 12 2 1 33 33 H 1.07997 * 126.21691 * 359.97438 * 14 13 12 34 34 H 1.07996 * 125.92107 * 179.73311 * 15 14 13 35 35 H 1.09003 * 109.46686 * 60.00174 * 21 20 19 36 36 H 1.09000 * 109.47364 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47099 * 300.00568 * 21 20 19 38 38 H 1.09003 * 109.47197 * 60.00495 * 22 20 19 39 39 H 1.09003 * 109.46703 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47016 * 299.99890 * 22 20 19 41 41 H 1.09008 * 109.46883 * 60.00028 * 23 20 19 42 42 H 1.09003 * 109.47503 * 179.97438 * 23 20 19 43 43 H 1.08996 * 109.47225 * 300.00295 * 23 20 19 44 44 H 1.08004 * 125.91459 * 0.03435 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0275 3.3493 1.5288 7 7 1.7142 3.9391 2.6617 8 14 3.0007 4.2759 0.2312 9 1 2.0642 4.9804 -0.6807 10 1 3.8878 5.2669 0.8917 11 1 3.8239 3.3171 -0.5487 12 6 1.9956 -0.7660 -1.1375 13 6 1.6371 -2.2204 -0.9727 14 6 0.4673 -2.8502 -1.4496 15 6 0.5311 -4.1476 -1.0960 16 7 1.7024 -4.3470 -0.4135 17 6 2.1228 -5.5189 0.1027 18 8 3.1833 -5.5774 0.6911 19 8 1.3674 -6.6239 -0.0339 20 6 1.8829 -7.8508 0.5467 21 6 2.0683 -7.6633 2.0538 22 6 0.8937 -8.9901 0.2928 23 6 3.2297 -8.1918 -0.0943 24 6 2.3747 -3.1551 -0.3446 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3633 0.4511 -0.9233 28 1 3.0797 1.3445 -0.1082 29 1 1.5611 1.9273 -0.8310 30 1 1.9887 4.8553 2.8236 31 1 3.0799 -0.6611 -1.1755 32 1 1.5612 -0.3873 -2.0627 33 1 -0.3335 -2.3772 -1.9986 34 1 -0.2142 -4.8996 -1.3087 35 1 1.1088 -7.4204 2.5104 36 1 2.4549 -8.5845 2.4897 37 1 2.7728 -6.8515 2.2349 38 1 0.7613 -9.1239 -0.7808 39 1 1.2810 -9.9113 0.7283 40 1 -0.0655 -8.7470 0.7498 41 1 3.9342 -7.3800 0.0869 42 1 3.6170 -9.1126 0.3418 43 1 3.0976 -8.3253 -1.1680 44 1 3.3304 -2.9933 0.1317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233430078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:37 Heat of formation + Delta-G solvation = -35.838620 kcal Electronic energy + Delta-G solvation = -23666.545592 eV Core-core repulsion = 20199.098163 eV Total energy + Delta-G solvation = -3467.447429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28199 -41.36588 -38.49891 -38.00780 -35.44363 -34.71050 -33.30730 -30.76279 -29.73449 -28.45533 -28.36664 -28.01893 -25.97305 -24.08780 -22.56172 -22.07181 -20.66335 -20.42770 -19.56789 -18.83866 -17.94754 -17.71392 -16.67293 -16.45817 -16.16933 -15.95651 -15.66624 -15.06616 -14.88398 -14.70351 -14.52774 -14.47459 -14.17914 -13.83738 -13.50019 -13.28193 -13.14694 -13.12762 -13.03154 -13.00069 -12.87626 -12.58634 -12.56859 -12.52787 -12.24279 -11.88113 -11.76862 -11.59202 -11.49535 -11.42945 -10.76767 -10.10756 -9.35271 -8.94158 -8.25740 -6.29019 0.15138 0.66172 1.36933 1.39337 1.50362 1.77508 1.89390 2.37289 2.59577 3.07661 3.50927 3.60727 3.68933 3.84026 3.92726 4.00270 4.11995 4.33542 4.40657 4.55425 4.56941 4.58915 4.69364 4.70083 4.76021 4.78358 4.82227 4.83016 4.92149 4.97624 5.05524 5.09568 5.15050 5.17209 5.20226 5.26437 5.30914 5.55793 5.65212 5.77497 6.02916 6.19956 6.42178 6.69699 6.71620 6.77580 7.34548 8.91187 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.002854 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.100003 B = 9809.356290 C =10032.561325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.548 5.548 3 C 0.170 3.830 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.246 1.246 12 C 0.120 3.880 13 C -0.128 4.128 14 C -0.165 4.165 15 C 0.000 4.000 16 N -0.430 5.430 17 C 0.663 3.337 18 O -0.539 6.539 19 O -0.345 6.345 20 C 0.120 3.880 21 C -0.186 4.186 22 C -0.134 4.134 23 C -0.183 4.183 24 C 0.014 3.986 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.025 0.975 28 H 0.031 0.969 29 H -0.009 1.009 30 H 0.266 0.734 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.167 0.833 34 H 0.205 0.795 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -27.696 -11.038 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.272 5.272 3 C 0.043 3.957 4 C -0.554 4.554 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.592 5.592 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.170 1.170 12 C -0.008 4.008 13 C -0.134 4.134 14 C -0.188 4.188 15 C -0.120 4.120 16 N -0.133 5.133 17 C 0.422 3.578 18 O -0.426 6.426 19 O -0.259 6.259 20 C 0.085 3.915 21 C -0.243 4.243 22 C -0.191 4.191 23 C -0.240 4.240 24 C -0.107 4.107 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.009 0.991 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.185 0.815 34 H 0.222 0.778 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.255 -28.175 -10.183 29.985 hybrid contribution 0.251 1.412 -0.431 1.498 sum -1.004 -26.763 -10.614 28.808 Atomic orbital electron populations 1.22159 0.87409 1.01106 0.99609 1.61841 1.08557 1.14489 1.42278 1.19970 0.95381 0.85706 0.94599 1.21285 1.34661 0.97486 1.01929 0.94719 1.25889 0.97045 0.98447 0.97815 1.70064 1.48767 1.13860 1.26520 0.85677 0.79218 0.78679 0.79140 1.19126 1.20886 1.16966 1.20477 1.00095 0.88265 0.91923 1.19698 0.96554 0.94594 1.02572 1.21409 0.99200 0.93154 1.05009 1.22658 0.89643 0.99324 1.00338 1.41809 1.20023 1.06195 1.45299 1.17991 0.81716 0.81249 0.76890 1.90951 1.23385 1.85271 1.43039 1.86371 1.48902 1.17067 1.73583 1.22725 0.96096 0.79505 0.93204 1.22537 1.03047 1.04670 0.94031 1.21915 0.98216 0.94918 1.04074 1.22517 0.95872 1.03967 1.01653 1.21861 1.00747 0.82280 1.05841 0.90701 0.93977 0.95666 0.95074 0.99094 0.92486 0.90441 0.93052 0.81513 0.77791 0.91733 0.88116 0.92493 0.90612 0.87361 0.90954 0.92387 0.88197 0.91279 0.81461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 9.11 127.69 1.16 2.93 16 2 N -0.55 -23.17 4.74 -931.64 -4.42 -27.59 16 3 C 0.17 8.27 3.79 85.56 0.32 8.60 16 4 C -0.52 -30.48 9.01 25.60 0.23 -30.25 16 5 H 0.03 2.30 7.37 -2.91 -0.02 2.28 16 6 C 0.00 0.29 5.47 84.65 0.46 0.75 16 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 8 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.25 -10.64 6.54 99.48 0.65 -9.98 16 12 C 0.12 3.99 5.46 85.56 0.47 4.46 16 13 C -0.13 -3.81 4.96 -19.98 -0.10 -3.91 16 14 C -0.16 -3.93 9.49 22.16 0.21 -3.72 16 15 C 0.00 0.00 10.99 83.05 0.91 0.91 16 16 N -0.43 -11.68 2.84 -598.34 -1.70 -13.38 16 17 C 0.66 17.82 7.83 129.79 1.02 18.84 16 18 O -0.54 -16.69 12.14 20.08 0.24 -16.44 16 19 O -0.34 -7.30 9.42 -54.53 -0.51 -7.82 16 20 C 0.12 1.90 1.13 -10.79 -0.01 1.89 16 21 C -0.19 -3.12 8.37 71.98 0.60 -2.52 16 22 C -0.13 -1.16 8.85 71.98 0.64 -0.52 16 23 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 24 C 0.01 0.41 10.87 83.05 0.90 1.32 16 25 H 0.07 2.53 6.33 -2.39 -0.02 2.52 16 26 H 0.04 1.91 6.76 -2.39 -0.02 1.89 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.03 1.49 6.99 -2.39 -0.02 1.48 16 29 H -0.01 -0.40 7.55 -2.39 -0.02 -0.42 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 32 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.21 3.05 8.04 -2.91 -0.02 3.02 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.25 5.88 -2.38 -0.01 1.24 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.17 5.23 8.04 -2.91 -0.02 5.20 16 Total: -1.00 -72.96 355.41 4.13 -68.83 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.91 Total: 13.80 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 7.42 Total: -3.42 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.82 Total: -101.29 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.27 Total: -24.26 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -72.96 4.13 -68.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233430078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.996 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds