Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46787 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.36942 * 120.00319 * 92.77542 * 5 4 3 7 7 H 1.07991 * 119.99916 * 213.36581 * 6 5 4 8 8 C 1.38817 * 119.99734 * 33.08333 * 6 5 4 9 9 N 1.31615 * 119.99535 * 206.84322 * 8 6 5 10 10 Si 1.86800 * 119.99927 * 26.84466 * 8 6 5 11 11 H 1.48499 * 109.47224 * 4.67532 * 10 8 6 12 12 H 1.48499 * 109.46985 * 124.67708 * 10 8 6 13 13 H 1.48497 * 109.46888 * 244.67320 * 10 8 6 14 14 C 1.46495 * 119.99984 * 272.76957 * 5 4 3 15 15 C 1.50699 * 109.47665 * 270.00383 * 14 5 4 16 16 C 1.35494 * 126.07528 * 269.69240 * 15 14 5 17 17 N 1.34959 * 108.98114 * 179.86169 * 16 15 14 18 18 H 0.96995 * 125.63446 * 180.11515 * 17 16 15 19 19 C 1.37693 * 108.73088 * 0.39954 * 17 16 15 20 20 C 1.46497 * 126.26620 * 179.79466 * 19 17 16 21 21 O 1.21617 * 120.00448 * 179.97438 * 20 19 17 22 22 O 1.34897 * 119.99425 * 359.95304 * 20 19 17 23 23 C 1.45202 * 116.99324 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.46839 * 180.02562 * 23 22 20 25 25 C 1.37994 * 107.47533 * 359.75642 * 19 17 16 26 26 H 1.08992 * 109.47246 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46804 * 300.00187 * 1 2 3 28 28 H 1.09004 * 109.46736 * 59.99825 * 1 2 3 29 29 H 1.09001 * 109.46804 * 239.99813 * 2 1 3 30 30 H 1.09004 * 109.46736 * 120.00175 * 2 1 3 31 31 H 1.09001 * 109.47459 * 60.00214 * 3 2 1 32 32 H 1.08994 * 109.47642 * 299.99882 * 3 2 1 33 33 H 1.08993 * 109.47543 * 59.99984 * 4 3 2 34 34 H 1.09001 * 109.47295 * 299.99750 * 4 3 2 35 35 H 0.97000 * 120.00441 * 359.97438 * 9 8 6 36 36 H 1.09001 * 109.46930 * 30.00253 * 14 5 4 37 37 H 1.09007 * 109.47369 * 149.99969 * 14 5 4 38 38 H 1.07995 * 125.50930 * 0.02562 * 16 15 14 39 39 H 1.08999 * 109.47503 * 299.99800 * 23 22 20 40 40 H 1.09000 * 109.47703 * 60.00472 * 23 22 20 41 41 H 1.09000 * 109.47623 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47012 * 300.00107 * 24 23 22 43 43 H 1.09001 * 109.47261 * 59.99361 * 24 23 22 44 44 H 1.07998 * 126.51714 * 180.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3403 3.4497 1.1861 7 1 4.1749 4.5120 1.2882 8 6 4.8332 2.7178 2.2577 9 7 4.6192 3.1293 3.4895 10 14 5.8000 1.1491 1.9515 11 1 5.9980 0.9667 0.4912 12 1 7.1216 1.2433 2.6223 13 1 5.0492 -0.0097 2.4979 14 6 4.2453 3.5350 -1.2656 15 6 5.6473 3.3059 -1.7685 16 6 6.7294 4.0731 -1.4921 17 7 7.8070 3.5534 -2.1165 18 1 8.7078 3.9113 -2.0812 19 6 7.4152 2.4347 -2.8173 20 6 8.2777 1.5782 -3.6350 21 8 7.8093 0.6129 -4.2076 22 8 9.5915 1.8606 -3.7532 23 6 10.3854 0.9691 -4.5798 24 6 11.8393 1.4456 -4.5931 25 6 6.0616 2.2675 -2.6077 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9338 0.9284 -0.8890 34 1 3.9330 0.9287 0.8909 35 1 4.1174 3.9441 3.6484 36 1 3.5307 3.1632 -2.0000 37 1 4.0848 4.6020 -1.1104 38 1 6.7300 4.9560 -0.8702 39 1 10.3384 -0.0413 -4.1737 40 1 9.9930 0.9706 -5.5967 41 1 12.4353 0.7767 -5.2140 42 1 11.8867 2.4562 -4.9990 43 1 12.2315 1.4439 -3.5761 44 1 5.4404 1.4833 -3.0144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234949272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = -37.842375 kcal Electronic energy + Delta-G solvation = -23866.270771 eV Core-core repulsion = 20398.736453 eV Total energy + Delta-G solvation = -3467.534319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06511 -39.75035 -36.53988 -36.47305 -33.95833 -32.17885 -31.83496 -30.68431 -29.44282 -28.00349 -25.66121 -24.10862 -23.36222 -22.40411 -21.07514 -20.55950 -19.96165 -19.34809 -17.94812 -17.16559 -16.96408 -16.60430 -15.29716 -15.12143 -14.57995 -14.32489 -14.04615 -13.90950 -13.46938 -13.32617 -13.24180 -13.11145 -12.97419 -12.53036 -12.25327 -12.09081 -12.00227 -11.89580 -11.81041 -11.51669 -10.96023 -10.70678 -10.66545 -10.61771 -10.53395 -10.37212 -10.26069 -9.83082 -9.45625 -9.13585 -8.50216 -8.35998 -7.84194 -6.93431 -6.22374 -3.28490 1.47827 2.61689 3.05130 3.45759 3.46921 3.50849 3.59951 3.77713 4.64400 4.70984 4.72645 4.90297 5.05055 5.12665 5.43632 5.46357 5.46879 5.52536 5.53031 5.62578 5.66011 5.69315 5.70279 5.84386 6.00152 6.17010 6.23173 6.29584 6.34386 6.39024 6.42361 6.50511 6.56476 6.61561 6.64935 6.81006 7.00112 7.17522 7.18700 7.36722 7.72931 7.87241 8.15795 8.55156 9.10976 9.69923 10.29716 11.13320 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.004313 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.109259 B = 6490.479883 C = 7138.234269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.134 4.134 4 C 0.152 3.848 5 N -0.596 5.596 6 C -0.347 4.347 7 H 0.062 0.938 8 C 0.000 4.000 9 N -0.913 5.913 10 Si 1.045 2.955 11 H -0.276 1.276 12 H -0.306 1.306 13 H -0.295 1.295 14 C 0.210 3.790 15 C -0.176 4.176 16 C 0.054 3.946 17 N -0.533 5.533 18 H 0.417 0.583 19 C -0.071 4.071 20 C 0.540 3.460 21 O -0.510 6.510 22 O -0.367 6.367 23 C 0.064 3.936 24 C -0.152 4.152 25 C -0.079 4.079 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.172 0.828 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -1.316 -14.438 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.174 4.174 4 C 0.027 3.973 5 N -0.317 5.317 6 C -0.476 4.476 7 H 0.079 0.921 8 C -0.203 4.203 9 N -0.551 5.551 10 Si 0.877 3.123 11 H -0.201 1.201 12 H -0.234 1.234 13 H -0.223 1.223 14 C 0.083 3.917 15 C -0.184 4.184 16 C -0.083 4.083 17 N -0.128 5.128 18 H 0.254 0.746 19 C -0.180 4.180 20 C 0.387 3.613 21 O -0.399 6.399 22 O -0.285 6.285 23 C -0.009 4.009 24 C -0.209 4.209 25 C -0.107 4.107 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.189 0.811 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.607 -2.808 -13.882 16.077 hybrid contribution -0.123 1.152 -0.628 1.318 sum 7.484 -1.655 -14.510 16.410 Atomic orbital electron populations 1.21751 0.96626 1.00623 1.01508 1.21534 0.95190 0.98355 1.01387 1.22143 0.98866 0.94708 1.01714 1.20991 0.91500 0.86495 0.98350 1.44238 1.74306 1.11502 1.01612 1.20021 1.43124 0.95188 0.89221 0.92076 1.26103 0.97812 1.03997 0.92424 1.70892 1.40491 1.23558 1.20162 0.83975 0.76539 0.76150 0.75679 1.20144 1.23435 1.22304 1.19367 0.87989 0.96658 0.87637 1.20780 0.99292 0.96850 1.01448 1.21929 0.85712 1.01106 0.99596 1.41769 1.10735 1.22000 1.38335 0.74630 1.19106 0.93870 0.95753 1.09302 1.19885 0.80063 0.82857 0.78471 1.90866 1.75182 1.28120 1.45695 1.86564 1.21248 1.54709 1.65968 1.22978 0.90576 0.93020 0.94372 1.21809 0.93236 1.02554 1.03323 1.21231 0.91187 0.99241 0.99061 0.93543 0.92902 0.93173 0.92653 0.92358 0.91730 0.93061 0.94413 0.93883 0.92539 0.93437 0.92706 0.81115 0.91177 0.91233 0.90239 0.91567 0.91459 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.13 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.15 3.31 4.15 -4.04 -0.02 3.29 16 5 N -0.60 -13.73 2.13 -174.61 -0.37 -14.10 16 6 C -0.35 -9.30 9.77 -15.06 -0.15 -9.45 16 7 H 0.06 1.75 8.06 -52.49 -0.42 1.32 16 8 C 0.00 -0.01 5.24 -17.43 -0.09 -0.10 16 9 N -0.91 -27.82 13.71 55.49 0.76 -27.06 16 10 Si 1.04 26.85 25.43 -169.99 -4.32 22.53 16 11 H -0.28 -6.88 6.57 56.52 0.37 -6.50 16 12 H -0.31 -7.98 7.11 56.52 0.40 -7.57 16 13 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 14 C 0.21 4.07 6.16 -5.20 -0.03 4.04 16 15 C -0.18 -3.23 5.69 -105.02 -0.60 -3.82 16 16 C 0.05 0.89 11.78 -17.16 -0.20 0.69 16 17 N -0.53 -7.86 6.07 -9.53 -0.06 -7.91 16 18 H 0.42 4.77 8.96 -40.82 -0.37 4.41 16 19 C -0.07 -1.20 7.10 -82.00 -0.58 -1.78 16 20 C 0.54 8.84 7.93 34.06 0.27 9.11 16 21 O -0.51 -9.38 16.68 -19.35 -0.32 -9.70 16 22 O -0.37 -4.98 10.23 -41.03 -0.42 -5.40 16 23 C 0.06 0.68 6.20 37.16 0.23 0.91 16 24 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 25 C -0.08 -1.44 10.60 -39.09 -0.41 -1.85 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.04 1.03 3.48 -51.93 -0.18 0.85 16 35 H 0.26 7.96 8.73 -40.82 -0.36 7.61 16 36 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 1.04 8.04 -51.92 -0.42 0.62 16 38 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.35 368.57 -7.65 -39.99 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.33 Total: 2.36 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.14 Total: -6.26 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.33 Total: -49.08 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.74 Total: -15.10 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.32 Total: 22.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.35 -7.65 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234949272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.150 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds