Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46787 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.36942 * 120.00319 * 92.77542 * 5 4 3 7 7 H 1.07991 * 119.99916 * 213.36581 * 6 5 4 8 8 C 1.38817 * 119.99734 * 33.08333 * 6 5 4 9 9 N 1.31615 * 119.99535 * 206.84322 * 8 6 5 10 10 Si 1.86800 * 119.99927 * 26.84466 * 8 6 5 11 11 H 1.48499 * 109.47224 * 4.67532 * 10 8 6 12 12 H 1.48499 * 109.46985 * 124.67708 * 10 8 6 13 13 H 1.48497 * 109.46888 * 244.67320 * 10 8 6 14 14 C 1.46495 * 119.99984 * 272.76957 * 5 4 3 15 15 C 1.50699 * 109.47665 * 270.00383 * 14 5 4 16 16 C 1.35494 * 126.07528 * 269.69240 * 15 14 5 17 17 N 1.34959 * 108.98114 * 179.86169 * 16 15 14 18 18 H 0.96995 * 125.63446 * 180.11515 * 17 16 15 19 19 C 1.37693 * 108.73088 * 0.39954 * 17 16 15 20 20 C 1.46497 * 126.26620 * 179.79466 * 19 17 16 21 21 O 1.21617 * 120.00448 * 179.97438 * 20 19 17 22 22 O 1.34897 * 119.99425 * 359.95304 * 20 19 17 23 23 C 1.45202 * 116.99324 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.46839 * 180.02562 * 23 22 20 25 25 C 1.37994 * 107.47533 * 359.75642 * 19 17 16 26 26 H 1.08992 * 109.47246 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46804 * 300.00187 * 1 2 3 28 28 H 1.09004 * 109.46736 * 59.99825 * 1 2 3 29 29 H 1.09001 * 109.46804 * 239.99813 * 2 1 3 30 30 H 1.09004 * 109.46736 * 120.00175 * 2 1 3 31 31 H 1.09001 * 109.47459 * 60.00214 * 3 2 1 32 32 H 1.08994 * 109.47642 * 299.99882 * 3 2 1 33 33 H 1.08993 * 109.47543 * 59.99984 * 4 3 2 34 34 H 1.09001 * 109.47295 * 299.99750 * 4 3 2 35 35 H 0.97000 * 120.00441 * 359.97438 * 9 8 6 36 36 H 1.09001 * 109.46930 * 30.00253 * 14 5 4 37 37 H 1.09007 * 109.47369 * 149.99969 * 14 5 4 38 38 H 1.07995 * 125.50930 * 0.02562 * 16 15 14 39 39 H 1.08999 * 109.47503 * 299.99800 * 23 22 20 40 40 H 1.09000 * 109.47703 * 60.00472 * 23 22 20 41 41 H 1.09000 * 109.47623 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47012 * 300.00107 * 24 23 22 43 43 H 1.09001 * 109.47261 * 59.99361 * 24 23 22 44 44 H 1.07998 * 126.51714 * 180.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3403 3.4497 1.1861 7 1 4.1749 4.5120 1.2882 8 6 4.8332 2.7178 2.2577 9 7 4.6192 3.1293 3.4895 10 14 5.8000 1.1491 1.9515 11 1 5.9980 0.9667 0.4912 12 1 7.1216 1.2433 2.6223 13 1 5.0492 -0.0097 2.4979 14 6 4.2453 3.5350 -1.2656 15 6 5.6473 3.3059 -1.7685 16 6 6.7294 4.0731 -1.4921 17 7 7.8070 3.5534 -2.1165 18 1 8.7078 3.9113 -2.0812 19 6 7.4152 2.4347 -2.8173 20 6 8.2777 1.5782 -3.6350 21 8 7.8093 0.6129 -4.2076 22 8 9.5915 1.8606 -3.7532 23 6 10.3854 0.9691 -4.5798 24 6 11.8393 1.4456 -4.5931 25 6 6.0616 2.2675 -2.6077 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9338 0.9284 -0.8890 34 1 3.9330 0.9287 0.8909 35 1 4.1174 3.9441 3.6484 36 1 3.5307 3.1632 -2.0000 37 1 4.0848 4.6020 -1.1104 38 1 6.7300 4.9560 -0.8702 39 1 10.3384 -0.0413 -4.1737 40 1 9.9930 0.9706 -5.5967 41 1 12.4353 0.7767 -5.2140 42 1 11.8867 2.4562 -4.9990 43 1 12.2315 1.4439 -3.5761 44 1 5.4404 1.4833 -3.0144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234949272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = -56.130183 kcal Electronic energy + Delta-G solvation = -23867.063790 eV Core-core repulsion = 20398.736453 eV Total energy + Delta-G solvation = -3468.327338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35684 -40.95776 -38.24036 -37.67469 -35.43262 -33.99348 -32.77771 -32.19095 -30.75152 -29.48574 -27.33422 -25.34414 -24.83665 -23.39414 -22.82446 -21.97041 -21.27150 -20.65751 -19.51275 -19.03105 -18.14249 -17.67014 -16.89139 -16.46096 -16.12399 -15.75217 -15.64925 -15.26616 -14.94239 -14.65305 -14.53854 -14.45522 -14.08343 -13.70248 -13.61475 -13.56273 -13.39774 -13.12812 -12.98023 -12.75285 -12.57426 -12.22973 -12.09951 -11.89381 -11.84462 -11.78982 -11.59471 -11.53249 -11.32463 -11.11388 -10.51606 -9.82321 -9.23278 -8.91211 -8.37726 -5.42410 0.18662 1.43507 1.51650 1.52081 1.71445 1.73495 2.11424 2.26934 2.55447 3.14126 3.66466 3.80684 3.97500 4.04657 4.13012 4.21985 4.23974 4.31323 4.32719 4.41781 4.47581 4.51716 4.71771 4.77483 4.83886 4.88846 4.93887 4.99595 5.04126 5.05626 5.08746 5.17667 5.20286 5.26392 5.34088 5.41099 5.49590 5.60253 5.80350 5.95060 6.00643 6.42720 6.54983 6.65827 7.02882 7.73282 8.23751 8.93213 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.004313 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.109259 B = 6490.479883 C = 7138.234269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.124 4.124 4 C 0.146 3.854 5 N -0.608 5.608 6 C -0.316 4.316 7 H 0.037 0.963 8 C -0.048 4.048 9 N -0.954 5.954 10 Si 1.084 2.916 11 H -0.264 1.264 12 H -0.313 1.313 13 H -0.294 1.294 14 C 0.212 3.788 15 C -0.198 4.198 16 C 0.061 3.939 17 N -0.515 5.515 18 H 0.434 0.566 19 C -0.077 4.077 20 C 0.544 3.456 21 O -0.535 6.535 22 O -0.363 6.363 23 C 0.054 3.946 24 C -0.145 4.145 25 C -0.095 4.095 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.253 0.747 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.188 0.812 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -1.970 -16.637 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.164 4.164 4 C 0.021 3.979 5 N -0.330 5.330 6 C -0.447 4.447 7 H 0.055 0.945 8 C -0.245 4.245 9 N -0.596 5.596 10 Si 0.914 3.086 11 H -0.188 1.188 12 H -0.243 1.243 13 H -0.222 1.222 14 C 0.087 3.913 15 C -0.206 4.206 16 C -0.079 4.079 17 N -0.111 5.111 18 H 0.274 0.726 19 C -0.187 4.187 20 C 0.391 3.609 21 O -0.426 6.426 22 O -0.280 6.280 23 C -0.019 4.019 24 C -0.202 4.202 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.205 0.795 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.576 -3.452 -16.134 18.595 hybrid contribution -0.389 1.428 -0.100 1.483 sum 8.188 -2.024 -16.234 18.294 Atomic orbital electron populations 1.21715 0.94666 1.02050 1.01690 1.21523 0.96941 0.96131 1.01701 1.21998 0.96895 0.96698 1.00833 1.21091 0.93199 0.85632 0.97939 1.44335 1.74837 1.11972 1.01807 1.19890 1.40149 0.94090 0.90544 0.94515 1.26840 0.99155 1.06269 0.92265 1.70974 1.43115 1.24057 1.21420 0.83415 0.75130 0.74087 0.75998 1.18843 1.24257 1.22190 1.19383 0.89416 0.96297 0.86254 1.20611 0.99067 0.98032 1.02887 1.22155 0.85609 1.01155 0.98970 1.41712 1.11323 1.21029 1.37024 0.72620 1.19193 0.93816 0.96261 1.09429 1.19810 0.80886 0.82249 0.77913 1.90851 1.75871 1.29127 1.46721 1.86561 1.19966 1.55230 1.66258 1.23356 0.91849 0.92701 0.94021 1.21833 0.91034 1.03386 1.03922 1.21317 0.91992 0.99421 0.99533 0.91521 0.93736 0.92019 0.90888 0.93510 0.94805 0.91613 0.92718 0.96163 0.93807 0.91564 0.92600 0.79519 0.91431 0.90828 0.87826 0.91035 0.91490 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.80 5.93 30.59 0.18 -3.62 16 3 C -0.12 -4.61 5.54 30.59 0.17 -4.44 16 4 C 0.15 6.21 4.15 86.38 0.36 6.57 16 5 N -0.61 -27.57 2.13 -706.35 -1.50 -29.07 16 6 C -0.32 -17.13 9.77 84.03 0.82 -16.31 16 7 H 0.04 2.16 8.06 -2.92 -0.02 2.13 16 8 C -0.05 -2.79 5.24 84.86 0.44 -2.34 16 9 N -0.95 -59.75 13.71 21.65 0.30 -59.46 16 10 Si 1.08 55.01 25.43 68.60 1.74 56.75 16 11 H -0.26 -12.67 6.57 99.48 0.65 -12.02 16 12 H -0.31 -16.09 7.11 99.48 0.71 -15.39 16 13 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 14 C 0.21 7.91 6.16 85.63 0.53 8.44 16 15 C -0.20 -6.95 5.69 -20.12 -0.11 -7.06 16 16 C 0.06 1.86 11.78 83.58 0.98 2.84 16 17 N -0.51 -13.97 6.07 -184.05 -1.12 -15.09 16 18 H 0.43 8.75 8.96 -92.71 -0.83 7.92 16 19 C -0.08 -2.45 7.10 40.32 0.29 -2.16 16 20 C 0.54 16.91 7.93 69.97 0.55 17.46 16 21 O -0.53 -19.04 16.68 19.45 0.32 -18.72 16 22 O -0.36 -9.10 10.23 -58.12 -0.59 -9.69 16 23 C 0.05 1.02 6.20 71.98 0.45 1.47 16 24 C -0.14 -1.72 10.29 71.98 0.74 -0.98 16 25 C -0.09 -3.28 10.60 22.59 0.24 -3.04 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 34 H 0.02 0.96 3.48 -2.39 -0.01 0.95 16 35 H 0.25 15.82 8.73 -92.71 -0.81 15.01 16 36 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 37 H 0.06 2.05 8.04 -2.38 -0.02 2.03 16 38 H 0.19 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -70.21 368.57 5.56 -64.65 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.06 Total: 16.74 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 6.35 Total: -6.11 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -2.33 Total: -103.62 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.27 Total: -28.41 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.74 Total: 56.75 kcal Total: -70.21 5.56 -64.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234949272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds