Wall clock time and date at job start Tue Mar 31 2020 07:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00038 * 2 1 4 4 C 1.50701 * 109.47186 * 66.04018 * 3 2 1 5 5 H 1.07995 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99783 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99904 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00191 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47286 * 89.99634 * 8 6 4 10 10 H 1.48496 * 109.47023 * 209.99955 * 8 6 4 11 11 H 1.48506 * 109.46873 * 329.99977 * 8 6 4 12 12 C 1.46897 * 111.00495 * 236.04282 * 2 1 3 13 13 C 1.50702 * 109.46723 * 293.95485 * 12 2 1 14 14 C 1.34618 * 125.91673 * 94.97626 * 13 12 2 15 15 C 1.41157 * 107.57311 * 179.97438 * 14 13 12 16 16 C 1.34624 * 107.57405 * 359.97438 * 15 14 13 17 17 N 1.37017 * 125.92173 * 274.97200 * 13 12 2 18 18 C 1.34778 * 125.73575 * 0.02562 * 17 13 12 19 19 O 1.21426 * 119.99720 * 0.02562 * 18 17 13 20 20 O 1.34545 * 120.00445 * 180.02562 * 18 17 13 21 21 C 1.45199 * 117.00360 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47168 * 59.99562 * 21 20 18 23 23 C 1.53001 * 109.47111 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.47076 * 299.99585 * 21 20 18 25 25 H 1.09001 * 109.46804 * 183.95260 * 1 2 3 26 26 H 1.09001 * 109.47253 * 303.95995 * 1 2 3 27 27 H 1.09001 * 109.46717 * 63.95968 * 1 2 3 28 28 H 1.09000 * 109.47260 * 186.04457 * 3 2 1 29 29 H 1.08998 * 109.46891 * 306.04300 * 3 2 1 30 30 H 0.96998 * 119.99946 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47192 * 173.95733 * 12 2 1 32 32 H 1.08996 * 109.46980 * 53.95400 * 12 2 1 33 33 H 1.07995 * 126.21524 * 0.03553 * 14 13 12 34 34 H 1.07997 * 126.21691 * 180.02562 * 15 14 13 35 35 H 1.07996 * 125.92107 * 179.73311 * 16 15 14 36 36 H 1.09003 * 109.46686 * 60.00174 * 22 21 20 37 37 H 1.09000 * 109.47364 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47099 * 300.00568 * 22 21 20 39 39 H 1.09003 * 109.47197 * 60.00495 * 23 21 20 40 40 H 1.09003 * 109.46703 * 179.97438 * 23 21 20 41 41 H 1.08997 * 109.47016 * 299.99890 * 23 21 20 42 42 H 1.09008 * 109.46883 * 60.00028 * 24 21 20 43 43 H 1.09003 * 109.47503 * 179.97438 * 24 21 20 44 44 H 1.08996 * 109.47225 * 300.00295 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0267 3.3496 1.5283 7 7 1.7142 3.9392 2.6617 8 14 2.9988 4.2767 0.2303 9 1 2.0614 4.9803 -0.6816 10 1 3.8854 5.2684 0.8902 11 1 3.8223 3.3182 -0.5498 12 6 1.9956 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9726 14 6 0.5665 -2.8356 -1.5090 15 6 0.6077 -4.1887 -1.1091 16 6 1.7024 -4.3530 -0.3429 17 7 2.3442 -3.1459 -0.2509 18 6 3.4807 -2.9089 0.4338 19 8 3.9617 -1.7941 0.4445 20 8 4.0823 -3.9076 1.1053 21 6 5.3030 -3.5800 1.8199 22 6 5.0088 -2.5012 2.8642 23 6 5.8373 -4.8324 2.5177 24 6 6.3490 -3.0610 0.8313 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3634 0.5741 0.8524 27 1 -0.3633 0.4512 -0.9234 28 1 3.0798 1.3444 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 1.9881 4.8556 2.8233 31 1 3.0798 -0.6611 -1.1754 32 1 1.5613 -0.3873 -2.0627 33 1 -0.1866 -2.3773 -2.1328 34 1 -0.1084 -4.9536 -1.3710 35 1 2.0170 -5.2750 0.1232 36 1 4.2636 -2.8710 3.5685 37 1 5.9251 -2.2555 3.4009 38 1 4.6279 -1.6089 2.3673 39 1 6.0469 -5.6012 1.7740 40 1 6.7539 -4.5865 3.0538 41 1 5.0919 -5.2017 3.2221 42 1 5.9681 -2.1686 0.3345 43 1 7.2654 -2.8146 1.3678 44 1 6.5586 -3.8295 0.0873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235625470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:41 Heat of formation + Delta-G solvation = -12.271053 kcal Electronic energy + Delta-G solvation = -24963.666509 eV Core-core repulsion = 21497.241046 eV Total energy + Delta-G solvation = -3466.425463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11493 -40.13481 -36.93374 -36.52353 -34.32003 -32.48899 -31.92167 -30.14885 -27.59107 -27.54584 -27.41120 -26.24678 -24.05067 -23.26123 -21.41856 -20.24996 -20.00985 -19.10713 -17.76860 -16.78361 -16.62182 -16.44820 -15.32257 -14.91934 -14.56831 -14.46030 -14.15067 -14.01185 -13.76000 -13.37225 -13.30676 -12.85244 -12.66811 -12.33331 -12.26040 -12.23079 -12.11727 -12.02018 -11.95570 -11.56130 -11.45232 -11.42092 -11.11228 -10.90111 -10.63346 -10.50097 -10.18795 -9.99322 -9.78977 -9.22951 -9.05285 -8.51981 -8.12659 -7.28551 -5.99454 -3.95589 1.41642 1.85656 2.97081 3.14561 3.32149 3.39484 3.43377 3.70038 4.47485 4.56457 4.62017 4.77166 4.93752 5.03255 5.17301 5.21196 5.32356 5.34122 5.43582 5.46940 5.56152 5.60617 5.67804 5.79277 5.82862 5.87755 6.04247 6.11043 6.17240 6.21207 6.26914 6.31906 6.35426 6.41861 6.74438 6.81039 6.91201 6.94148 7.08527 7.38886 7.67742 7.96731 8.05847 8.13315 8.72668 9.09270 9.62694 11.13861 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005532 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.217319 B = 5060.368381 C = 6489.238712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.519 5.519 3 C 0.166 3.834 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.068 3.932 7 N -0.903 5.903 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.110 3.890 13 C 0.082 3.918 14 C -0.186 4.186 15 C -0.171 4.171 16 C -0.013 4.013 17 N -0.411 5.411 18 C 0.656 3.344 19 O -0.482 6.482 20 O -0.354 6.354 21 C 0.134 3.866 22 C -0.188 4.188 23 C -0.138 4.138 24 C -0.185 4.185 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.031 0.969 29 H -0.017 1.017 30 H 0.262 0.738 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -19.610 -5.671 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.243 5.243 3 C 0.040 3.960 4 C -0.541 4.541 5 H 0.097 0.903 6 C -0.133 4.133 7 N -0.542 5.542 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.019 4.019 13 C -0.022 4.022 14 C -0.210 4.210 15 C -0.194 4.194 16 C -0.135 4.135 17 N -0.113 5.113 18 C 0.412 3.588 19 O -0.364 6.364 20 O -0.270 6.270 21 C 0.098 3.902 22 C -0.245 4.245 23 C -0.196 4.196 24 C -0.242 4.242 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.000 1.000 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.189 0.811 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.961 -19.225 -4.899 20.715 hybrid contribution 0.210 0.932 -1.220 1.550 sum 6.171 -18.293 -6.119 20.252 Atomic orbital electron populations 1.22325 0.88309 1.00254 1.00672 1.61890 1.07205 1.16248 1.38947 1.20170 0.95378 0.83562 0.96916 1.21014 1.35171 0.97026 1.00873 0.90271 1.24878 0.95801 0.97347 0.95318 1.69899 1.47199 1.13172 1.23942 0.86874 0.80687 0.80023 0.82255 1.20384 1.21222 1.19133 1.20767 1.01792 0.85944 0.93398 1.20727 0.93233 0.91986 0.96229 1.20924 0.99114 0.94470 1.06443 1.21093 0.98868 0.97034 1.02414 1.22110 0.96422 0.89083 1.05835 1.41671 1.18997 1.10964 1.39694 1.17917 0.80109 0.83118 0.77658 1.91044 1.62890 1.21785 1.60708 1.86296 1.40634 1.38598 1.61429 1.22252 0.80118 0.96644 0.91220 1.22555 1.03007 1.00327 0.98620 1.21857 1.01411 0.95774 1.00521 1.22533 0.98755 1.03320 0.99618 0.93046 0.90306 0.97030 0.95149 0.99975 0.92778 0.89033 0.93672 0.83651 0.83772 0.81098 0.91864 0.90794 0.88615 0.91547 0.89879 0.91309 0.89351 0.90662 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.13 60.07 0.55 1.22 16 2 N -0.52 -11.60 4.74 -245.82 -1.17 -12.76 16 3 C 0.17 4.22 3.79 -4.97 -0.02 4.21 16 4 C -0.50 -14.77 9.01 -34.44 -0.31 -15.08 16 5 H 0.08 2.54 7.37 -52.49 -0.39 2.15 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 8 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 12 C 0.11 2.07 4.54 -4.98 -0.02 2.05 16 13 C 0.08 1.37 5.59 -81.56 -0.46 0.92 16 14 C -0.19 -2.62 9.71 -39.76 -0.39 -3.01 16 15 C -0.17 -2.08 10.85 -39.75 -0.43 -2.51 16 16 C -0.01 -0.17 10.99 -16.51 -0.18 -0.35 16 17 N -0.41 -6.62 2.84 -63.38 -0.18 -6.80 16 18 C 0.66 11.00 7.83 54.06 0.42 11.43 16 19 O -0.48 -9.29 9.84 -19.22 -0.19 -9.47 16 20 O -0.35 -5.00 9.42 -40.07 -0.38 -5.37 16 21 C 0.13 1.61 1.13 -90.62 -0.10 1.51 16 22 C -0.19 -2.54 8.37 37.16 0.31 -2.23 16 23 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 24 C -0.19 -2.14 8.37 37.16 0.31 -1.83 16 25 H 0.05 0.94 6.54 -51.93 -0.34 0.60 16 26 H 0.08 1.78 6.76 -51.93 -0.35 1.42 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.03 0.80 6.99 -51.93 -0.36 0.44 16 29 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.09 1.83 6.29 -51.93 -0.33 1.50 16 32 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.17 1.74 8.04 -52.49 -0.42 1.32 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.67 5.88 -51.93 -0.31 1.37 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.27 5.88 -51.92 -0.31 0.97 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -33.16 351.64 -7.60 -40.76 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.01 Total: 0.97 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.63 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.57 Total: -47.04 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.57 Total: -14.85 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.16 -7.60 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235625470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.490 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds