Wall clock time and date at job start Tue Mar 31 2020 07:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00038 * 2 1 4 4 C 1.50701 * 109.47186 * 66.04018 * 3 2 1 5 5 H 1.07995 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99783 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99904 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00191 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47286 * 89.99634 * 8 6 4 10 10 H 1.48496 * 109.47023 * 209.99955 * 8 6 4 11 11 H 1.48506 * 109.46873 * 329.99977 * 8 6 4 12 12 C 1.46897 * 111.00495 * 236.04282 * 2 1 3 13 13 C 1.50702 * 109.46723 * 293.95485 * 12 2 1 14 14 C 1.34618 * 125.91673 * 94.97626 * 13 12 2 15 15 C 1.41157 * 107.57311 * 179.97438 * 14 13 12 16 16 C 1.34624 * 107.57405 * 359.97438 * 15 14 13 17 17 N 1.37017 * 125.92173 * 274.97200 * 13 12 2 18 18 C 1.34778 * 125.73575 * 0.02562 * 17 13 12 19 19 O 1.21426 * 119.99720 * 0.02562 * 18 17 13 20 20 O 1.34545 * 120.00445 * 180.02562 * 18 17 13 21 21 C 1.45199 * 117.00360 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47168 * 59.99562 * 21 20 18 23 23 C 1.53001 * 109.47111 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.47076 * 299.99585 * 21 20 18 25 25 H 1.09001 * 109.46804 * 183.95260 * 1 2 3 26 26 H 1.09001 * 109.47253 * 303.95995 * 1 2 3 27 27 H 1.09001 * 109.46717 * 63.95968 * 1 2 3 28 28 H 1.09000 * 109.47260 * 186.04457 * 3 2 1 29 29 H 1.08998 * 109.46891 * 306.04300 * 3 2 1 30 30 H 0.96998 * 119.99946 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47192 * 173.95733 * 12 2 1 32 32 H 1.08996 * 109.46980 * 53.95400 * 12 2 1 33 33 H 1.07995 * 126.21524 * 0.03553 * 14 13 12 34 34 H 1.07997 * 126.21691 * 180.02562 * 15 14 13 35 35 H 1.07996 * 125.92107 * 179.73311 * 16 15 14 36 36 H 1.09003 * 109.46686 * 60.00174 * 22 21 20 37 37 H 1.09000 * 109.47364 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47099 * 300.00568 * 22 21 20 39 39 H 1.09003 * 109.47197 * 60.00495 * 23 21 20 40 40 H 1.09003 * 109.46703 * 179.97438 * 23 21 20 41 41 H 1.08997 * 109.47016 * 299.99890 * 23 21 20 42 42 H 1.09008 * 109.46883 * 60.00028 * 24 21 20 43 43 H 1.09003 * 109.47503 * 179.97438 * 24 21 20 44 44 H 1.08996 * 109.47225 * 300.00295 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0267 3.3496 1.5283 7 7 1.7142 3.9392 2.6617 8 14 2.9988 4.2767 0.2303 9 1 2.0614 4.9803 -0.6816 10 1 3.8854 5.2684 0.8902 11 1 3.8223 3.3182 -0.5498 12 6 1.9956 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9726 14 6 0.5665 -2.8356 -1.5090 15 6 0.6077 -4.1887 -1.1091 16 6 1.7024 -4.3530 -0.3429 17 7 2.3442 -3.1459 -0.2509 18 6 3.4807 -2.9089 0.4338 19 8 3.9617 -1.7941 0.4445 20 8 4.0823 -3.9076 1.1053 21 6 5.3030 -3.5800 1.8199 22 6 5.0088 -2.5012 2.8642 23 6 5.8373 -4.8324 2.5177 24 6 6.3490 -3.0610 0.8313 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3634 0.5741 0.8524 27 1 -0.3633 0.4512 -0.9234 28 1 3.0798 1.3444 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 1.9881 4.8556 2.8233 31 1 3.0798 -0.6611 -1.1754 32 1 1.5613 -0.3873 -2.0627 33 1 -0.1866 -2.3773 -2.1328 34 1 -0.1084 -4.9536 -1.3710 35 1 2.0170 -5.2750 0.1232 36 1 4.2636 -2.8710 3.5685 37 1 5.9251 -2.2555 3.4009 38 1 4.6279 -1.6089 2.3673 39 1 6.0469 -5.6012 1.7740 40 1 6.7539 -4.5865 3.0538 41 1 5.0919 -5.2017 3.2221 42 1 5.9681 -2.1686 0.3345 43 1 7.2654 -2.8146 1.3678 44 1 6.5586 -3.8295 0.0873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235625470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:41 Heat of formation + Delta-G solvation = -34.077635 kcal Electronic energy + Delta-G solvation = -24964.612113 eV Core-core repulsion = 21497.241046 eV Total energy + Delta-G solvation = -3467.371067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.26017 -41.24414 -38.29491 -38.07106 -35.37270 -34.69815 -33.03345 -31.64844 -29.49879 -28.44828 -28.34228 -27.73563 -25.24630 -25.01164 -22.49597 -22.12750 -21.07088 -20.27607 -19.22098 -18.67307 -17.86977 -17.56135 -16.71240 -16.35049 -16.20585 -16.06192 -15.57833 -15.12353 -14.96164 -14.69800 -14.56636 -14.44930 -14.08641 -13.66231 -13.47905 -13.29860 -13.19965 -13.13380 -13.05530 -12.96243 -12.94592 -12.67320 -12.57726 -12.52718 -12.29332 -11.96978 -11.84114 -11.53952 -11.50926 -11.24205 -10.81136 -10.14922 -9.29621 -8.97414 -8.30693 -6.33326 0.24607 0.75455 1.30042 1.32959 1.44360 1.86174 2.01975 2.31994 2.65766 3.02166 3.37868 3.63679 3.70412 3.79308 3.85944 4.04748 4.23103 4.30727 4.45603 4.48461 4.55095 4.59254 4.60623 4.66807 4.70030 4.76416 4.79987 4.84257 4.89442 4.98720 5.08229 5.11464 5.17711 5.19969 5.24099 5.24516 5.33495 5.50998 5.64348 5.89032 5.95866 6.26567 6.37350 6.61570 6.70958 6.87631 7.29609 8.86167 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005532 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.217319 B = 5060.368381 C = 6489.238712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.180 3.820 4 C -0.512 4.512 5 H 0.034 0.966 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.257 1.257 12 C 0.118 3.882 13 C 0.037 3.963 14 C -0.167 4.167 15 C -0.164 4.164 16 C -0.012 4.012 17 N -0.423 5.423 18 C 0.651 3.349 19 O -0.517 6.517 20 O -0.348 6.348 21 C 0.126 3.874 22 C -0.185 4.185 23 C -0.131 4.131 24 C -0.181 4.181 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.028 0.972 28 H 0.018 0.982 29 H -0.010 1.010 30 H 0.267 0.733 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.165 0.835 34 H 0.182 0.818 35 H 0.199 0.801 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -21.931 -7.382 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.264 5.264 3 C 0.053 3.947 4 C -0.550 4.550 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.770 3.230 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.181 1.181 12 C -0.010 4.010 13 C -0.066 4.066 14 C -0.191 4.191 15 C -0.187 4.187 16 C -0.133 4.133 17 N -0.126 5.126 18 C 0.408 3.592 19 O -0.402 6.402 20 O -0.263 6.263 21 C 0.090 3.910 22 C -0.243 4.243 23 C -0.187 4.187 24 C -0.238 4.238 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.008 0.992 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.183 0.817 34 H 0.199 0.801 35 H 0.216 0.784 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.326 -21.586 -6.622 23.448 hybrid contribution 0.041 1.529 -0.606 1.645 sum 6.366 -20.057 -7.227 22.250 Atomic orbital electron populations 1.22200 0.87226 1.01146 0.99937 1.61732 1.08309 1.14591 1.41761 1.19849 0.94647 0.85429 0.94788 1.21191 1.34728 0.97400 1.01688 0.94764 1.25808 0.96857 0.98325 0.97765 1.70047 1.48657 1.13861 1.26246 0.85729 0.79355 0.78598 0.79353 1.18623 1.20398 1.18107 1.20606 1.00513 0.87374 0.92532 1.20555 0.95396 0.91268 0.99388 1.21301 0.97771 0.95281 1.04727 1.21518 0.99003 0.96839 1.01308 1.22758 0.96202 0.88885 1.05443 1.41838 1.18985 1.11957 1.39804 1.18192 0.80345 0.83115 0.77583 1.91039 1.63946 1.23271 1.61965 1.86318 1.41332 1.37615 1.61031 1.22609 0.79521 0.98054 0.90834 1.22509 1.03766 0.99113 0.98879 1.21885 1.02162 0.94018 1.00683 1.22487 0.99245 1.02170 0.99890 0.90836 0.93657 0.95362 0.96364 0.99227 0.92390 0.91040 0.91994 0.81729 0.80052 0.78437 0.92146 0.88617 0.93200 0.90159 0.87624 0.91006 0.92836 0.88579 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 9.13 127.69 1.17 2.93 16 2 N -0.54 -24.77 4.74 -931.65 -4.42 -29.19 16 3 C 0.18 9.41 3.79 85.56 0.32 9.73 16 4 C -0.51 -31.49 9.01 25.60 0.23 -31.26 16 5 H 0.03 2.35 7.37 -2.91 -0.02 2.33 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 8 Si 0.95 46.32 27.47 68.60 1.88 48.21 16 9 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 12 C 0.12 4.48 4.54 85.56 0.39 4.87 16 13 C 0.04 1.20 5.59 40.92 0.23 1.42 16 14 C -0.17 -4.24 9.71 22.16 0.22 -4.02 16 15 C -0.16 -3.39 10.85 22.16 0.24 -3.15 16 16 C -0.01 -0.29 10.99 83.05 0.91 0.62 16 17 N -0.42 -13.33 2.84 -584.93 -1.66 -14.99 16 18 C 0.65 22.27 7.83 129.79 1.02 23.28 16 19 O -0.52 -21.13 9.84 20.08 0.20 -20.93 16 20 O -0.35 -9.66 9.42 -54.53 -0.51 -10.17 16 21 C 0.13 2.93 1.13 -10.79 -0.01 2.92 16 22 C -0.19 -5.16 8.37 71.98 0.60 -4.56 16 23 C -0.13 -1.87 8.85 71.98 0.64 -1.24 16 24 C -0.18 -4.09 8.37 71.98 0.60 -3.49 16 25 H 0.07 2.64 6.54 -2.39 -0.02 2.63 16 26 H 0.04 2.13 6.76 -2.39 -0.02 2.11 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.02 0.99 6.99 -2.39 -0.02 0.98 16 29 H -0.01 -0.50 7.55 -2.39 -0.02 -0.51 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.07 2.97 6.29 -2.39 -0.02 2.96 16 32 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 33 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.20 3.36 8.04 -2.91 -0.02 3.34 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.87 5.88 -2.39 -0.01 1.86 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.62 5.88 -2.38 -0.01 1.60 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.70 351.64 3.72 -72.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.92 Total: 15.96 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 7.02 Total: -0.88 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.78 Total: -105.16 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.32 Total: -31.10 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.21 kcal Total: -76.70 3.72 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235625470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.904 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds