Wall clock time and date at job start Tue Mar 31 2020 08:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46873 * 2 1 4 4 H 1.08994 * 109.47350 * 305.86588 * 3 2 1 5 5 C 1.50702 * 109.46769 * 185.86364 * 3 2 1 6 6 H 1.07996 * 120.00340 * 301.11869 * 5 3 2 7 7 C 1.37877 * 119.99552 * 121.11832 * 5 3 2 8 8 N 1.31523 * 119.99859 * 173.10695 * 7 5 3 9 9 Si 1.86796 * 120.00246 * 353.10223 * 7 5 3 10 10 H 1.48502 * 109.47175 * 84.81833 * 9 7 5 11 11 H 1.48502 * 109.47452 * 204.81408 * 9 7 5 12 12 H 1.48499 * 109.47351 * 324.81608 * 9 7 5 13 13 N 1.46894 * 109.46994 * 65.86791 * 3 2 1 14 14 C 1.46853 * 111.00182 * 66.04376 * 13 3 2 15 15 C 1.53034 * 109.52159 * 185.84010 * 14 13 3 16 16 C 1.53123 * 109.27875 * 300.81590 * 15 14 13 17 17 C 1.53125 * 109.15596 * 57.66309 * 16 15 14 18 18 H 1.08992 * 109.50608 * 62.28159 * 17 16 15 19 19 C 1.52997 * 109.49954 * 182.36678 * 17 16 15 20 20 H 1.09001 * 109.47705 * 54.18662 * 19 17 16 21 21 N 1.46902 * 109.47206 * 174.18800 * 19 17 16 22 22 C 1.53000 * 109.47233 * 294.18315 * 19 17 16 23 23 F 1.39907 * 109.46809 * 65.52593 * 22 19 17 24 24 F 1.39894 * 109.47769 * 185.53069 * 22 19 17 25 25 F 1.39903 * 109.47282 * 305.53520 * 22 19 17 26 26 C 1.46846 * 110.99970 * 190.25561 * 13 3 2 27 27 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47230 * 300.00154 * 1 2 3 29 29 H 1.09005 * 109.47441 * 59.99711 * 1 2 3 30 30 H 1.09004 * 109.47356 * 240.00621 * 2 1 3 31 31 H 1.08995 * 109.47391 * 120.00278 * 2 1 3 32 32 H 0.97002 * 119.99988 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46224 * 305.85664 * 14 13 3 34 34 H 1.09000 * 109.45961 * 65.83646 * 14 13 3 35 35 H 1.08995 * 109.50661 * 60.76087 * 15 14 13 36 36 H 1.09007 * 109.50367 * 180.88359 * 15 14 13 37 37 H 1.09000 * 109.52437 * 177.55746 * 16 15 14 38 38 H 1.08994 * 109.52497 * 297.68854 * 16 15 14 39 39 H 1.00899 * 110.99775 * 59.99215 * 21 19 17 40 40 H 1.00899 * 111.00053 * 183.94834 * 21 19 17 41 41 H 1.09002 * 109.45775 * 294.17164 * 26 13 3 42 42 H 1.08995 * 109.46547 * 54.13905 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5934 1.9858 -0.8328 5 6 3.5399 1.4451 -0.1452 6 1 4.1538 0.9356 0.5828 7 6 4.1286 2.0977 -1.2075 8 7 5.4372 2.2167 -1.2627 9 14 3.0675 2.8129 -2.5683 10 1 2.6022 4.1668 -2.1735 11 1 3.8634 2.9082 -3.8184 12 1 1.8933 1.9325 -2.7950 13 7 1.6692 2.0929 1.2639 14 6 2.3680 1.4753 2.3983 15 6 1.8507 2.0774 3.7067 16 6 2.0911 3.5896 3.6972 17 6 1.3932 4.2017 2.4795 18 1 0.3184 4.0369 2.5550 19 6 1.6774 5.7042 2.4296 20 1 2.7541 5.8715 2.4568 21 7 1.1257 6.2661 1.1894 22 6 1.0247 6.3870 3.6332 23 9 1.6380 5.9437 4.8100 24 9 1.1762 7.7732 3.5220 25 9 -0.3371 6.0681 3.6685 26 6 1.9237 3.5380 1.2066 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 5.8514 2.6762 -2.0099 33 1 2.1855 0.4008 2.3958 34 1 3.4383 1.6622 2.3108 35 1 0.7831 1.8792 3.8015 36 1 2.3807 1.6301 4.5477 37 1 1.6851 4.0287 4.6085 38 1 3.1615 3.7880 3.6428 39 1 0.1280 6.1236 1.1404 40 1 1.3560 7.2445 1.1019 41 1 2.9961 3.7149 1.1246 42 1 1.4186 3.9616 0.3385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:41 Heat of formation + Delta-G solvation = -165.765294 kcal Electronic energy + Delta-G solvation = -26172.926771 eV Core-core repulsion = 22157.988558 eV Total energy + Delta-G solvation = -4014.938213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.21272 -47.72639 -47.65350 -38.87949 -36.17840 -33.96492 -32.07074 -30.88484 -29.97493 -27.45860 -26.86047 -23.71929 -23.39872 -22.20220 -21.31047 -19.79911 -18.76887 -18.49921 -18.34864 -17.55814 -16.83135 -16.13434 -15.29905 -14.76868 -14.60851 -14.42146 -14.24384 -14.13498 -14.02073 -13.85244 -13.80196 -13.27965 -13.16200 -12.99070 -12.82751 -12.41166 -12.18411 -12.06600 -11.84734 -11.65179 -11.37329 -10.92591 -10.78648 -10.55240 -10.43515 -10.11969 -9.97579 -9.71623 -9.59252 -9.57131 -9.09002 -9.08102 -8.56731 -7.03701 -6.12699 -4.13918 2.69384 3.29387 3.36607 3.38555 3.73158 3.89699 3.95326 4.38542 4.39162 4.74858 5.04998 5.07937 5.32947 5.36440 5.52703 5.70660 5.83722 5.94759 6.08093 6.10594 6.12830 6.26661 6.31972 6.36856 6.50465 6.53132 6.68001 6.74968 6.76427 6.79679 6.95234 7.00723 7.04332 7.12327 7.22081 7.29543 7.65910 8.17162 8.32014 8.51483 8.92548 9.52517 11.00011 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.005877 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.319173 B = 4762.859453 C = 5388.329660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.173 3.827 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.079 3.921 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.267 1.267 13 N -0.533 5.533 14 C 0.058 3.942 15 C -0.112 4.112 16 C -0.128 4.128 17 C -0.079 4.079 18 H 0.082 0.918 19 C 0.064 3.936 20 H 0.124 0.876 21 N -0.815 5.815 22 C 0.409 3.591 23 F -0.179 7.179 24 F -0.192 7.192 25 F -0.185 7.185 26 C 0.083 3.917 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.351 0.649 40 H 0.350 0.650 41 H 0.046 0.954 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 6.941 8.702 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.067 3.933 4 H 0.062 0.938 5 C -0.577 4.577 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.192 1.192 13 N -0.257 5.257 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.166 4.166 17 C -0.098 4.098 18 H 0.100 0.900 19 C -0.051 4.051 20 H 0.142 0.858 21 N -0.345 5.345 22 C 0.352 3.648 23 F -0.160 7.160 24 F -0.174 7.174 25 F -0.167 7.167 26 C -0.046 4.046 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.064 0.936 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.507 6.437 8.264 14.147 hybrid contribution -0.133 1.401 -0.078 1.410 sum -9.641 7.838 8.186 14.879 Atomic orbital electron populations 1.21755 0.97774 0.99146 1.01424 1.21618 0.93509 0.98634 1.00645 1.19732 0.94476 0.91147 0.87910 0.93756 1.21531 0.90774 1.34324 1.11114 0.90822 1.25090 0.94692 0.94987 0.97691 1.69932 1.09403 1.42589 1.31396 0.86953 0.80764 0.80441 0.82003 1.19413 1.21834 1.19162 1.62526 1.56657 1.01903 1.04640 1.21899 0.97477 0.98125 0.89546 1.21566 1.01097 0.94446 0.97894 1.21913 1.00751 0.96910 0.97017 1.21284 1.01729 0.88585 0.98219 0.89979 1.23029 1.01438 0.97218 0.83410 0.85822 1.58706 1.19640 1.22775 1.33339 1.22514 0.77611 0.77226 0.87489 1.93122 1.82732 1.88453 1.51701 1.93143 1.95498 1.32551 1.96165 1.93154 1.34202 1.92485 1.96810 1.21620 0.99791 0.88805 0.94355 0.94951 0.92216 0.94161 0.92861 0.93038 0.92713 0.91785 0.93619 0.92098 0.92442 0.91437 0.91768 0.83418 0.83558 0.93558 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.81 37.15 0.36 -2.12 16 2 C -0.11 -2.14 5.32 -26.73 -0.14 -2.28 16 3 C 0.17 3.89 1.67 -68.86 -0.12 3.77 16 4 H 0.04 1.05 4.58 -51.93 -0.24 0.81 16 5 C -0.54 -14.20 7.10 -34.44 -0.24 -14.45 16 6 H 0.07 2.14 7.07 -52.49 -0.37 1.77 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 8 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 9 Si 0.87 21.09 26.98 -169.99 -4.59 16.50 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.28 6.76 56.52 0.38 -5.90 16 13 N -0.53 -10.49 4.09 -228.08 -0.93 -11.42 16 14 C 0.06 1.08 4.70 -3.83 -0.02 1.06 16 15 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 16 C -0.13 -1.85 4.67 -26.60 -0.12 -1.98 16 17 C -0.08 -1.17 1.98 -90.54 -0.18 -1.35 16 18 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 19 C 0.06 0.82 2.47 -67.71 -0.17 0.65 16 20 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 21 N -0.82 -9.78 8.22 -4.67 -0.04 -9.82 16 22 C 0.41 4.98 2.80 37.16 0.10 5.08 16 23 F -0.18 -2.30 14.25 2.25 0.03 -2.27 16 24 F -0.19 -2.29 16.77 2.25 0.04 -2.25 16 25 F -0.18 -2.33 16.21 2.25 0.04 -2.29 16 26 C 0.08 1.56 4.24 -3.83 -0.02 1.55 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.02 6.20 -51.93 -0.32 0.70 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 33 H 0.06 1.19 6.12 -51.93 -0.32 0.87 16 34 H 0.05 0.98 6.71 -51.93 -0.35 0.63 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.90 5.65 -51.93 -0.29 0.61 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.35 3.83 8.74 -39.29 -0.34 3.49 16 40 H 0.35 3.52 8.58 -39.29 -0.34 3.18 16 41 H 0.05 1.02 7.61 -51.93 -0.39 0.63 16 42 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -28.18 326.97 -6.80 -34.98 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.26 Total: 7.19 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.80 Total: -9.83 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.20 Total: -46.95 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.59 Total: 16.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.18 -6.80 -34.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.785 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds