Wall clock time and date at job start Tue Mar 31 2020 08:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46873 * 2 1 4 4 H 1.08994 * 109.47350 * 305.86588 * 3 2 1 5 5 C 1.50702 * 109.46769 * 185.86364 * 3 2 1 6 6 H 1.07996 * 120.00340 * 301.11869 * 5 3 2 7 7 C 1.37877 * 119.99552 * 121.11832 * 5 3 2 8 8 N 1.31523 * 119.99859 * 173.10695 * 7 5 3 9 9 Si 1.86796 * 120.00246 * 353.10223 * 7 5 3 10 10 H 1.48502 * 109.47175 * 84.81833 * 9 7 5 11 11 H 1.48502 * 109.47452 * 204.81408 * 9 7 5 12 12 H 1.48499 * 109.47351 * 324.81608 * 9 7 5 13 13 N 1.46894 * 109.46994 * 65.86791 * 3 2 1 14 14 C 1.46853 * 111.00182 * 66.04376 * 13 3 2 15 15 C 1.53034 * 109.52159 * 185.84010 * 14 13 3 16 16 C 1.53123 * 109.27875 * 300.81590 * 15 14 13 17 17 C 1.53125 * 109.15596 * 57.66309 * 16 15 14 18 18 H 1.08992 * 109.50608 * 62.28159 * 17 16 15 19 19 C 1.52997 * 109.49954 * 182.36678 * 17 16 15 20 20 H 1.09001 * 109.47705 * 54.18662 * 19 17 16 21 21 N 1.46902 * 109.47206 * 174.18800 * 19 17 16 22 22 C 1.53000 * 109.47233 * 294.18315 * 19 17 16 23 23 F 1.39907 * 109.46809 * 65.52593 * 22 19 17 24 24 F 1.39894 * 109.47769 * 185.53069 * 22 19 17 25 25 F 1.39903 * 109.47282 * 305.53520 * 22 19 17 26 26 C 1.46846 * 110.99970 * 190.25561 * 13 3 2 27 27 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47230 * 300.00154 * 1 2 3 29 29 H 1.09005 * 109.47441 * 59.99711 * 1 2 3 30 30 H 1.09004 * 109.47356 * 240.00621 * 2 1 3 31 31 H 1.08995 * 109.47391 * 120.00278 * 2 1 3 32 32 H 0.97002 * 119.99988 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46224 * 305.85664 * 14 13 3 34 34 H 1.09000 * 109.45961 * 65.83646 * 14 13 3 35 35 H 1.08995 * 109.50661 * 60.76087 * 15 14 13 36 36 H 1.09007 * 109.50367 * 180.88359 * 15 14 13 37 37 H 1.09000 * 109.52437 * 177.55746 * 16 15 14 38 38 H 1.08994 * 109.52497 * 297.68854 * 16 15 14 39 39 H 1.00899 * 110.99775 * 59.99215 * 21 19 17 40 40 H 1.00899 * 111.00053 * 183.94834 * 21 19 17 41 41 H 1.09002 * 109.45775 * 294.17164 * 26 13 3 42 42 H 1.08995 * 109.46547 * 54.13905 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5934 1.9858 -0.8328 5 6 3.5399 1.4451 -0.1452 6 1 4.1538 0.9356 0.5828 7 6 4.1286 2.0977 -1.2075 8 7 5.4372 2.2167 -1.2627 9 14 3.0675 2.8129 -2.5683 10 1 2.6022 4.1668 -2.1735 11 1 3.8634 2.9082 -3.8184 12 1 1.8933 1.9325 -2.7950 13 7 1.6692 2.0929 1.2639 14 6 2.3680 1.4753 2.3983 15 6 1.8507 2.0774 3.7067 16 6 2.0911 3.5896 3.6972 17 6 1.3932 4.2017 2.4795 18 1 0.3184 4.0369 2.5550 19 6 1.6774 5.7042 2.4296 20 1 2.7541 5.8715 2.4568 21 7 1.1257 6.2661 1.1894 22 6 1.0247 6.3870 3.6332 23 9 1.6380 5.9437 4.8100 24 9 1.1762 7.7732 3.5220 25 9 -0.3371 6.0681 3.6685 26 6 1.9237 3.5380 1.2066 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 5.8514 2.6762 -2.0099 33 1 2.1855 0.4008 2.3958 34 1 3.4383 1.6622 2.3108 35 1 0.7831 1.8792 3.8015 36 1 2.3807 1.6301 4.5477 37 1 1.6851 4.0287 4.6085 38 1 3.1615 3.7880 3.6428 39 1 0.1280 6.1236 1.1404 40 1 1.3560 7.2445 1.1019 41 1 2.9961 3.7149 1.1246 42 1 1.4186 3.9616 0.3385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:40 Heat of formation + Delta-G solvation = -184.845605 kcal Electronic energy + Delta-G solvation = -26173.754155 eV Core-core repulsion = 22157.988558 eV Total energy + Delta-G solvation = -4015.765597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.19633 -48.70238 -48.63829 -40.33780 -37.55439 -35.36431 -34.09312 -32.35727 -31.26749 -29.01282 -28.24436 -25.35603 -24.74978 -23.71275 -22.55549 -21.14670 -20.40103 -19.55113 -19.37067 -18.87916 -18.58873 -17.35222 -16.74012 -16.17623 -15.85636 -15.69381 -15.52498 -15.34919 -15.13732 -14.94495 -14.84545 -14.78490 -14.71661 -14.47680 -14.28395 -13.82910 -13.69498 -13.35748 -13.31487 -13.19019 -12.86030 -12.74566 -12.35126 -12.01523 -11.82487 -11.74030 -11.60493 -11.40271 -11.29257 -11.01904 -10.86776 -10.64487 -10.07706 -8.79508 -8.28677 -6.32080 1.35169 1.36075 1.44416 1.68120 2.34127 2.70589 2.90385 2.92127 3.06463 3.39418 3.52071 3.83856 3.90585 4.09022 4.29699 4.32587 4.42961 4.52369 4.61745 4.71148 4.76368 4.79181 4.94029 5.00905 5.10680 5.15310 5.20026 5.25616 5.32835 5.36176 5.45305 5.51949 5.55378 5.69431 5.73756 5.80822 6.22734 6.28980 6.53436 6.66805 6.76939 7.37340 8.87752 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.005877 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.319173 B = 4762.859453 C = 5388.329660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.174 3.826 4 H 0.039 0.961 5 C -0.528 4.528 6 H 0.032 0.968 7 C 0.023 3.977 8 N -0.945 5.945 9 Si 0.929 3.071 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.251 1.251 13 N -0.521 5.521 14 C 0.061 3.939 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.069 4.069 18 H 0.093 0.907 19 C 0.070 3.930 20 H 0.120 0.880 21 N -0.825 5.825 22 C 0.419 3.581 23 F -0.181 7.181 24 F -0.188 7.188 25 F -0.183 7.183 26 C 0.089 3.911 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.005 0.995 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.359 0.641 40 H 0.362 0.638 41 H 0.005 0.995 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 7.599 9.417 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C 0.067 3.933 4 H 0.057 0.943 5 C -0.567 4.567 6 H 0.050 0.950 7 C -0.175 4.175 8 N -0.586 5.586 9 Si 0.754 3.246 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.175 1.175 13 N -0.244 5.244 14 C -0.067 4.067 15 C -0.142 4.142 16 C -0.164 4.164 17 C -0.088 4.088 18 H 0.111 0.889 19 C -0.046 4.046 20 H 0.138 0.862 21 N -0.356 5.356 22 C 0.362 3.638 23 F -0.163 7.163 24 F -0.169 7.169 25 F -0.165 7.165 26 C -0.040 4.040 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.024 0.976 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.354 7.098 8.997 16.851 hybrid contribution 0.804 1.152 -0.235 1.424 sum -11.550 8.249 8.762 16.680 Atomic orbital electron populations 1.21637 0.94748 1.00890 1.01713 1.21546 0.96127 0.96640 1.00100 1.19703 0.91520 0.92945 0.89143 0.94329 1.21740 0.92878 1.32600 1.09528 0.94974 1.25859 0.95656 0.95833 1.00193 1.70079 1.11368 1.44665 1.32450 0.86003 0.79447 0.80274 0.78840 1.18421 1.22067 1.17522 1.62540 1.55835 1.02350 1.03685 1.21908 0.95155 0.98520 0.91164 1.21528 1.02023 0.94657 0.96004 1.21920 1.00151 0.96604 0.97731 1.21141 1.01986 0.89698 0.96009 0.88860 1.22828 1.01484 0.95977 0.84297 0.86218 1.58683 1.20329 1.23795 1.32801 1.22229 0.77458 0.77277 0.86879 1.93115 1.82818 1.88502 1.51826 1.93155 1.95484 1.32188 1.96122 1.93161 1.34069 1.92491 1.96775 1.21555 0.97294 0.88523 0.96582 0.92534 0.91714 0.94009 0.94073 0.93097 0.92852 0.91788 0.97627 0.90507 0.90666 0.89299 0.93009 0.82528 0.82243 0.97641 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.81 71.98 0.71 -3.50 16 2 C -0.11 -4.19 5.32 30.60 0.16 -4.02 16 3 C 0.17 7.80 1.67 44.17 0.07 7.87 16 4 H 0.04 1.79 4.58 -2.39 -0.01 1.77 16 5 C -0.53 -28.94 7.10 25.60 0.18 -28.75 16 6 H 0.03 1.99 7.07 -2.91 -0.02 1.97 16 7 C 0.02 1.31 5.47 84.65 0.46 1.77 16 8 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 9 Si 0.93 43.93 26.98 68.60 1.85 45.78 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.25 -11.15 6.76 99.48 0.67 -10.48 16 13 N -0.52 -20.23 4.09 -875.51 -3.58 -23.81 16 14 C 0.06 2.27 4.70 86.32 0.41 2.68 16 15 C -0.10 -2.95 6.09 30.65 0.19 -2.77 16 16 C -0.13 -3.44 4.67 30.68 0.14 -3.30 16 17 C -0.07 -1.93 1.98 -10.74 -0.02 -1.95 16 18 H 0.09 2.47 7.50 -2.39 -0.02 2.45 16 19 C 0.07 1.66 2.47 44.91 0.11 1.78 16 20 H 0.12 2.98 8.14 -2.39 -0.02 2.97 16 21 N -0.82 -18.25 8.22 -168.68 -1.39 -19.64 16 22 C 0.42 9.16 2.80 71.98 0.20 9.36 16 23 F -0.18 -4.20 14.25 44.97 0.64 -3.55 16 24 F -0.19 -4.03 16.77 44.97 0.75 -3.28 16 25 F -0.18 -4.04 16.21 44.97 0.73 -3.31 16 26 C 0.09 3.34 4.24 86.33 0.37 3.71 16 27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.06 1.99 7.78 -2.39 -0.02 1.97 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.99 6.20 -2.39 -0.01 1.98 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.06 2.36 6.12 -2.39 -0.01 2.35 16 34 H 0.01 0.25 6.71 -2.39 -0.02 0.23 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.10 5.65 -2.39 -0.01 2.09 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.36 6.95 8.74 -89.69 -0.78 6.17 16 40 H 0.36 6.57 8.58 -89.69 -0.77 5.80 16 41 H 0.01 0.24 7.61 -2.39 -0.02 0.22 16 42 H 0.07 2.55 7.36 -2.39 -0.02 2.53 16 Total: -1.00 -62.60 326.97 1.75 -60.86 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.54 Total: 22.11 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 2.98 Total: -17.13 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.67 Total: -101.47 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.12 Total: -10.15 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.85 Total: 45.78 kcal Total: -62.60 1.75 -60.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.988 kcal (2) G-P(sol) polarization free energy of solvation -62.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds