Wall clock time and date at job start Tue Mar 31 2020 08:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47225 * 2 1 4 4 H 1.08999 * 109.47150 * 182.29179 * 3 2 1 5 5 C 1.50700 * 109.46996 * 62.29924 * 3 2 1 6 6 H 1.08008 * 119.99976 * 239.99876 * 5 3 2 7 7 C 1.37874 * 120.00701 * 59.99647 * 5 3 2 8 8 N 1.31514 * 120.00422 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99694 * 359.72888 * 7 5 3 10 10 H 1.48505 * 109.46800 * 270.27374 * 9 7 5 11 11 H 1.48499 * 109.46848 * 30.27177 * 9 7 5 12 12 H 1.48496 * 109.47345 * 150.27467 * 9 7 5 13 13 N 1.46899 * 109.47342 * 302.29828 * 3 2 1 14 14 C 1.46847 * 110.99361 * 301.99265 * 13 3 2 15 15 C 1.53043 * 109.52065 * 174.16340 * 14 13 3 16 16 C 1.53117 * 109.27947 * 59.17767 * 15 14 13 17 17 C 1.53117 * 109.15903 * 302.34729 * 16 15 14 18 18 H 1.09004 * 109.50608 * 297.71256 * 17 16 15 19 19 C 1.53006 * 109.50326 * 177.59924 * 17 16 15 20 20 H 1.08994 * 109.47128 * 185.19873 * 19 17 16 21 21 N 1.46908 * 109.46605 * 305.19386 * 19 17 16 22 22 C 1.52997 * 109.47405 * 65.19127 * 19 17 16 23 23 F 1.39905 * 109.46724 * 60.00481 * 22 19 17 24 24 F 1.39897 * 109.46927 * 180.02562 * 22 19 17 25 25 F 1.39895 * 109.47516 * 300.00552 * 22 19 17 26 26 C 1.46850 * 111.00122 * 177.78721 * 13 3 2 27 27 H 1.08996 * 109.47129 * 304.03618 * 1 2 3 28 28 H 1.09004 * 109.47033 * 64.03799 * 1 2 3 29 29 H 1.09005 * 109.47130 * 184.03020 * 1 2 3 30 30 H 1.09001 * 109.47426 * 239.99911 * 2 1 3 31 31 H 1.09005 * 109.46930 * 119.99987 * 2 1 3 32 32 H 0.97000 * 119.99783 * 179.72339 * 8 7 5 33 33 H 1.09006 * 109.46485 * 294.17140 * 14 13 3 34 34 H 1.08992 * 109.46779 * 54.14764 * 14 13 3 35 35 H 1.08999 * 109.50218 * 299.23782 * 15 14 13 36 36 H 1.08995 * 109.53768 * 179.14019 * 15 14 13 37 37 H 1.09003 * 109.52515 * 182.44519 * 16 15 14 38 38 H 1.08999 * 109.52400 * 62.25403 * 16 15 14 39 39 H 1.00900 * 110.99644 * 60.00128 * 21 19 17 40 40 H 1.00898 * 110.99519 * 183.95012 * 21 19 17 41 41 H 1.09000 * 109.45845 * 305.84905 * 26 13 3 42 42 H 1.08997 * 109.46499 * 65.81907 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1292 1.4427 -0.0411 5 6 1.5847 2.1362 1.2580 6 1 0.9607 3.0154 1.1942 7 6 1.9647 1.6486 2.4904 8 7 1.5669 2.2537 3.5882 9 14 3.0376 0.1234 2.6010 10 1 2.1760 -1.0848 2.6590 11 1 3.9158 0.0483 1.4058 12 1 3.8739 0.1942 3.8261 13 7 1.5055 2.1508 -1.1707 14 6 1.8905 1.4744 -2.4159 15 6 1.1991 2.1524 -3.6010 16 6 1.6105 3.6264 -3.6507 17 6 1.2423 4.2959 -2.3238 18 1 0.1619 4.2574 -2.1842 19 6 1.7040 5.7545 -2.3421 20 1 1.5253 6.2044 -1.3656 21 7 3.1391 5.8098 -2.6515 22 6 0.9223 6.5236 -3.4089 23 9 -0.4444 6.4708 -3.1142 24 9 1.3450 7.8571 -3.4260 25 9 1.1517 5.9460 -4.6623 26 6 1.9325 3.5559 -1.1758 27 1 -0.3633 0.5752 0.8516 28 1 -0.3633 0.4499 -0.9240 29 1 -0.3634 -1.0252 0.0722 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8310 1.9083 4.4553 33 1 2.9714 1.5350 -2.5430 34 1 1.5885 0.4282 -2.3693 35 1 0.1181 2.0801 -3.4816 36 1 1.4966 1.6601 -4.5269 37 1 1.0868 4.1235 -4.4672 38 1 2.6865 3.6991 -3.8091 39 1 3.3308 5.3984 -3.5526 40 1 3.4823 6.7576 -2.6063 41 1 1.6609 4.0213 -0.2283 42 1 3.0131 3.6066 -1.3086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:44 Heat of formation + Delta-G solvation = -148.393561 kcal Electronic energy + Delta-G solvation = -26056.765532 eV Core-core repulsion = 22042.580614 eV Total energy + Delta-G solvation = -4014.184918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.24998 -47.79430 -47.64592 -39.10531 -36.39057 -34.05676 -31.89310 -30.97118 -30.04208 -27.49681 -26.87211 -23.95356 -23.70724 -22.27462 -21.46987 -19.55363 -18.99118 -18.59423 -18.40609 -17.55219 -16.39156 -16.32775 -15.67850 -14.90984 -14.78869 -14.47311 -14.24443 -14.11684 -13.97821 -13.86680 -13.81664 -13.61386 -13.14250 -12.95735 -12.88201 -12.68348 -12.58160 -12.17917 -11.81036 -11.54316 -11.11515 -10.78989 -10.74964 -10.58077 -10.53541 -10.20606 -10.06990 -9.95514 -9.64990 -9.31505 -9.16391 -8.85713 -8.51702 -7.26546 -6.05435 -4.02565 2.66890 3.27930 3.38020 3.39394 3.70383 3.87760 3.93195 4.37481 4.41396 4.65894 4.88957 4.95628 5.24295 5.28099 5.40292 5.55466 5.66877 5.87316 5.96917 6.05407 6.10142 6.12380 6.19156 6.23934 6.37987 6.41515 6.50308 6.67375 6.69736 6.72888 6.80434 6.98594 7.04999 7.05910 7.19276 7.46523 7.64876 7.99525 8.14421 8.68095 9.00800 9.57438 11.07102 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004895 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.845514 B = 5718.451716 C = 6252.611894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.187 3.813 4 H -0.004 1.004 5 C -0.497 4.497 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.270 1.270 12 H -0.298 1.298 13 N -0.520 5.520 14 C 0.047 3.953 15 C -0.110 4.110 16 C -0.137 4.137 17 C -0.080 4.080 18 H 0.091 0.909 19 C 0.065 3.935 20 H 0.128 0.872 21 N -0.816 5.816 22 C 0.409 3.591 23 F -0.180 7.180 24 F -0.191 7.191 25 F -0.182 7.182 26 C 0.081 3.919 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.350 0.650 40 H 0.349 0.651 41 H 0.091 0.909 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 5.588 -15.525 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.080 3.920 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.226 1.226 13 N -0.244 5.244 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.174 4.174 17 C -0.100 4.100 18 H 0.109 0.891 19 C -0.050 4.050 20 H 0.146 0.854 21 N -0.347 5.347 22 C 0.352 3.648 23 F -0.162 7.162 24 F -0.173 7.173 25 F -0.163 7.163 26 C -0.047 4.047 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.109 0.891 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.312 5.125 -14.665 15.537 hybrid contribution 1.052 -0.101 -0.861 1.364 sum 1.364 5.025 -15.526 16.375 Atomic orbital electron populations 1.21476 0.95294 0.98399 1.03060 1.21896 0.97599 0.98154 0.98262 1.19680 0.92383 0.90541 0.89389 0.98648 1.20896 1.31725 1.13252 0.87683 0.89917 1.24878 0.95635 0.96683 0.95765 1.69873 1.45766 1.40505 0.97612 0.86954 0.80865 0.84144 0.76832 1.20512 1.19513 1.22609 1.61793 1.60064 1.01292 1.01245 1.22136 0.96536 0.98692 0.90770 1.21514 1.01256 0.94734 0.97311 1.22082 1.01399 0.96887 0.97064 1.21326 1.01774 0.89387 0.97472 0.89103 1.22971 0.87560 0.98204 0.96307 0.85412 1.58798 1.11356 1.25794 1.38719 1.22523 0.79672 0.78412 0.84219 1.93187 1.33736 1.96171 1.93095 1.93153 1.89820 1.37562 1.96767 1.93058 1.94359 1.83392 1.45539 1.21802 0.96752 0.89025 0.97094 0.91091 0.92831 0.96018 0.94821 0.93653 0.92706 0.96185 0.90991 0.91381 0.92408 0.90725 0.91907 0.83380 0.83676 0.89084 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.52 37.16 0.35 -2.19 16 2 C -0.12 -2.61 4.70 -26.73 -0.13 -2.74 16 3 C 0.19 4.28 1.35 -68.87 -0.09 4.19 16 4 H 0.00 -0.10 7.21 -51.93 -0.37 -0.47 16 5 C -0.50 -13.23 7.22 -34.44 -0.25 -13.47 16 6 H 0.08 2.39 6.79 -52.48 -0.36 2.03 16 7 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 8 N -0.90 -26.73 13.96 55.43 0.77 -25.95 16 9 Si 0.88 21.74 24.39 -169.99 -4.15 17.59 16 10 H -0.28 -6.73 6.85 56.52 0.39 -6.34 16 11 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 12 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 13 N -0.52 -10.05 3.73 -228.08 -0.85 -10.90 16 14 C 0.05 0.78 5.14 -3.83 -0.02 0.76 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.14 -1.72 4.26 -26.61 -0.11 -1.84 16 17 C -0.08 -1.13 2.11 -90.54 -0.19 -1.32 16 18 H 0.09 1.36 7.67 -51.93 -0.40 0.97 16 19 C 0.06 0.77 2.65 -67.71 -0.18 0.59 16 20 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 21 N -0.82 -8.61 8.53 -4.66 -0.04 -8.65 16 22 C 0.41 4.74 2.82 37.16 0.10 4.85 16 23 F -0.18 -2.35 16.71 2.25 0.04 -2.31 16 24 F -0.19 -2.19 16.94 2.25 0.04 -2.16 16 25 F -0.18 -2.09 13.41 2.25 0.03 -2.06 16 26 C 0.08 1.45 4.41 -3.83 -0.02 1.44 16 27 H 0.07 1.63 7.16 -51.93 -0.37 1.26 16 28 H 0.05 1.02 7.64 -51.93 -0.40 0.63 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.64 6.37 -51.93 -0.33 0.31 16 31 H 0.05 1.05 3.21 -51.93 -0.17 0.88 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 1.18 6.00 -51.93 -0.31 0.87 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.88 5.37 -51.93 -0.28 0.61 16 38 H 0.06 0.76 6.49 -51.93 -0.34 0.43 16 39 H 0.35 3.41 6.56 -39.29 -0.26 3.15 16 40 H 0.35 3.06 8.72 -39.29 -0.34 2.72 16 41 H 0.09 1.87 6.15 -51.93 -0.32 1.55 16 42 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -28.44 315.96 -6.12 -34.57 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.94 Total: 4.60 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.79 Total: -9.48 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.12 Total: -45.51 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.44 -6.12 -34.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.827 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds