Wall clock time and date at job start Tue Mar 31 2020 08:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47225 * 2 1 4 4 H 1.08999 * 109.47150 * 182.29179 * 3 2 1 5 5 C 1.50700 * 109.46996 * 62.29924 * 3 2 1 6 6 H 1.08008 * 119.99976 * 239.99876 * 5 3 2 7 7 C 1.37874 * 120.00701 * 59.99647 * 5 3 2 8 8 N 1.31514 * 120.00422 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99694 * 359.72888 * 7 5 3 10 10 H 1.48505 * 109.46800 * 270.27374 * 9 7 5 11 11 H 1.48499 * 109.46848 * 30.27177 * 9 7 5 12 12 H 1.48496 * 109.47345 * 150.27467 * 9 7 5 13 13 N 1.46899 * 109.47342 * 302.29828 * 3 2 1 14 14 C 1.46847 * 110.99361 * 301.99265 * 13 3 2 15 15 C 1.53043 * 109.52065 * 174.16340 * 14 13 3 16 16 C 1.53117 * 109.27947 * 59.17767 * 15 14 13 17 17 C 1.53117 * 109.15903 * 302.34729 * 16 15 14 18 18 H 1.09004 * 109.50608 * 297.71256 * 17 16 15 19 19 C 1.53006 * 109.50326 * 177.59924 * 17 16 15 20 20 H 1.08994 * 109.47128 * 185.19873 * 19 17 16 21 21 N 1.46908 * 109.46605 * 305.19386 * 19 17 16 22 22 C 1.52997 * 109.47405 * 65.19127 * 19 17 16 23 23 F 1.39905 * 109.46724 * 60.00481 * 22 19 17 24 24 F 1.39897 * 109.46927 * 180.02562 * 22 19 17 25 25 F 1.39895 * 109.47516 * 300.00552 * 22 19 17 26 26 C 1.46850 * 111.00122 * 177.78721 * 13 3 2 27 27 H 1.08996 * 109.47129 * 304.03618 * 1 2 3 28 28 H 1.09004 * 109.47033 * 64.03799 * 1 2 3 29 29 H 1.09005 * 109.47130 * 184.03020 * 1 2 3 30 30 H 1.09001 * 109.47426 * 239.99911 * 2 1 3 31 31 H 1.09005 * 109.46930 * 119.99987 * 2 1 3 32 32 H 0.97000 * 119.99783 * 179.72339 * 8 7 5 33 33 H 1.09006 * 109.46485 * 294.17140 * 14 13 3 34 34 H 1.08992 * 109.46779 * 54.14764 * 14 13 3 35 35 H 1.08999 * 109.50218 * 299.23782 * 15 14 13 36 36 H 1.08995 * 109.53768 * 179.14019 * 15 14 13 37 37 H 1.09003 * 109.52515 * 182.44519 * 16 15 14 38 38 H 1.08999 * 109.52400 * 62.25403 * 16 15 14 39 39 H 1.00900 * 110.99644 * 60.00128 * 21 19 17 40 40 H 1.00898 * 110.99519 * 183.95012 * 21 19 17 41 41 H 1.09000 * 109.45845 * 305.84905 * 26 13 3 42 42 H 1.08997 * 109.46499 * 65.81907 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1292 1.4427 -0.0411 5 6 1.5847 2.1362 1.2580 6 1 0.9607 3.0154 1.1942 7 6 1.9647 1.6486 2.4904 8 7 1.5669 2.2537 3.5882 9 14 3.0376 0.1234 2.6010 10 1 2.1760 -1.0848 2.6590 11 1 3.9158 0.0483 1.4058 12 1 3.8739 0.1942 3.8261 13 7 1.5055 2.1508 -1.1707 14 6 1.8905 1.4744 -2.4159 15 6 1.1991 2.1524 -3.6010 16 6 1.6105 3.6264 -3.6507 17 6 1.2423 4.2959 -2.3238 18 1 0.1619 4.2574 -2.1842 19 6 1.7040 5.7545 -2.3421 20 1 1.5253 6.2044 -1.3656 21 7 3.1391 5.8098 -2.6515 22 6 0.9223 6.5236 -3.4089 23 9 -0.4444 6.4708 -3.1142 24 9 1.3450 7.8571 -3.4260 25 9 1.1517 5.9460 -4.6623 26 6 1.9325 3.5559 -1.1758 27 1 -0.3633 0.5752 0.8516 28 1 -0.3633 0.4499 -0.9240 29 1 -0.3634 -1.0252 0.0722 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8310 1.9083 4.4553 33 1 2.9714 1.5350 -2.5430 34 1 1.5885 0.4282 -2.3693 35 1 0.1181 2.0801 -3.4816 36 1 1.4966 1.6601 -4.5269 37 1 1.0868 4.1235 -4.4672 38 1 2.6865 3.6991 -3.8091 39 1 3.3308 5.3984 -3.5526 40 1 3.4823 6.7576 -2.6063 41 1 1.6609 4.0213 -0.2283 42 1 3.0131 3.6066 -1.3086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:43 Heat of formation + Delta-G solvation = -168.156832 kcal Electronic energy + Delta-G solvation = -26057.622532 eV Core-core repulsion = 22042.580614 eV Total energy + Delta-G solvation = -4015.041918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.20747 -48.72813 -48.63064 -40.45005 -37.76286 -35.46625 -33.84918 -32.41413 -31.24608 -28.78353 -28.45671 -25.59218 -24.94393 -23.77020 -22.72493 -21.02806 -20.36499 -19.55747 -19.39714 -18.65242 -18.32039 -17.42189 -17.19022 -16.31309 -15.94572 -15.70921 -15.46652 -15.29827 -15.17584 -15.02357 -14.91740 -14.78824 -14.74047 -14.40109 -14.27082 -14.03618 -13.97745 -13.50975 -13.16017 -12.94740 -12.74061 -12.49212 -12.43653 -12.08310 -11.93278 -11.86734 -11.60225 -11.35797 -11.23837 -10.91874 -10.69178 -10.61721 -10.07564 -8.84939 -8.22469 -6.22163 1.30765 1.35401 1.44079 1.69064 2.34774 2.71313 2.91750 2.95799 3.12313 3.32847 3.49111 3.78364 3.83050 4.10682 4.25549 4.34594 4.43043 4.45527 4.46831 4.61578 4.68241 4.76082 4.91375 4.93159 5.04830 5.09830 5.17417 5.23754 5.28112 5.33242 5.36116 5.44058 5.55809 5.69812 5.79880 5.82715 6.12761 6.29506 6.50398 6.80682 6.84466 7.41383 8.93569 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004895 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.845514 B = 5718.451716 C = 6252.611894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 C 0.191 3.809 4 H -0.020 1.020 5 C -0.486 4.486 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.937 3.063 10 H -0.267 1.267 11 H -0.256 1.256 12 H -0.302 1.302 13 N -0.527 5.527 14 C 0.045 3.955 15 C -0.105 4.105 16 C -0.131 4.131 17 C -0.072 4.072 18 H 0.079 0.921 19 C 0.071 3.929 20 H 0.122 0.878 21 N -0.819 5.819 22 C 0.417 3.583 23 F -0.189 7.189 24 F -0.188 7.188 25 F -0.177 7.177 26 C 0.089 3.911 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.357 0.643 40 H 0.361 0.639 41 H 0.052 0.948 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 4.523 -18.310 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.160 4.160 3 C 0.082 3.918 4 H -0.002 1.002 5 C -0.524 4.524 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.588 5.588 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.181 1.181 12 H -0.230 1.230 13 N -0.252 5.252 14 C -0.083 4.083 15 C -0.143 4.143 16 C -0.168 4.168 17 C -0.092 4.092 18 H 0.098 0.902 19 C -0.044 4.044 20 H 0.140 0.860 21 N -0.352 5.352 22 C 0.360 3.640 23 F -0.171 7.171 24 F -0.170 7.170 25 F -0.158 7.158 26 C -0.039 4.039 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.070 0.930 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.938 4.064 -17.490 17.981 hybrid contribution 0.833 0.321 -0.034 0.893 sum 1.771 4.385 -17.524 18.151 Atomic orbital electron populations 1.21366 0.94544 0.99451 1.01980 1.21868 0.98246 0.96838 0.99054 1.19494 0.91350 0.91687 0.89223 1.00231 1.21085 1.29890 1.11887 0.89567 0.93663 1.25612 0.97232 0.99688 0.95484 1.70019 1.48031 1.42583 0.98203 0.86029 0.79451 0.80992 0.76948 1.19325 1.18054 1.23036 1.61749 1.60050 1.01819 1.01566 1.22260 0.96947 0.98973 0.90099 1.21510 1.00714 0.95030 0.97037 1.22072 1.02198 0.96413 0.96142 1.21160 1.00628 0.90496 0.96881 0.90220 1.22760 0.88419 0.96801 0.96460 0.85976 1.58767 1.10278 1.26895 1.39283 1.22326 0.79072 0.78467 0.84131 1.93176 1.34477 1.96221 1.93191 1.93162 1.89736 1.37303 1.96754 1.93060 1.94280 1.83311 1.45192 1.21641 0.96623 0.88658 0.96994 0.94726 0.91703 0.93467 0.91680 0.94999 0.92834 0.96162 0.90558 0.91736 0.89515 0.89194 0.90946 0.82537 0.82352 0.92977 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.52 71.98 0.69 -3.87 16 2 C -0.12 -5.04 4.70 30.59 0.14 -4.90 16 3 C 0.19 8.68 1.35 44.17 0.06 8.74 16 4 H -0.02 -0.95 7.21 -2.39 -0.02 -0.97 16 5 C -0.49 -26.77 7.22 25.60 0.18 -26.58 16 6 H 0.05 2.78 6.79 -2.91 -0.02 2.76 16 7 C 0.02 0.96 5.45 84.65 0.46 1.42 16 8 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.94 45.11 24.39 68.60 1.67 46.79 16 10 H -0.27 -12.29 6.85 99.48 0.68 -11.61 16 11 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 13 N -0.53 -20.14 3.73 -875.53 -3.27 -23.41 16 14 C 0.05 1.37 5.14 86.33 0.44 1.81 16 15 C -0.11 -2.48 6.09 30.65 0.19 -2.30 16 16 C -0.13 -2.93 4.26 30.67 0.13 -2.80 16 17 C -0.07 -1.97 2.11 -10.74 -0.02 -1.99 16 18 H 0.08 2.36 7.67 -2.38 -0.02 2.34 16 19 C 0.07 1.62 2.65 44.91 0.12 1.74 16 20 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 21 N -0.82 -16.03 8.53 -168.66 -1.44 -17.47 16 22 C 0.42 8.99 2.82 71.98 0.20 9.19 16 23 F -0.19 -4.71 16.71 44.97 0.75 -3.96 16 24 F -0.19 -3.98 16.94 44.97 0.76 -3.22 16 25 F -0.18 -3.58 13.41 44.97 0.60 -2.97 16 26 C 0.09 3.22 4.41 86.32 0.38 3.60 16 27 H 0.03 1.58 7.16 -2.39 -0.02 1.57 16 28 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 2.28 6.37 -2.39 -0.02 2.26 16 31 H 0.03 1.40 3.21 -2.38 -0.01 1.40 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 2.24 6.00 -2.39 -0.01 2.23 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.81 5.37 -2.39 -0.01 1.80 16 38 H 0.07 1.52 6.49 -2.39 -0.02 1.50 16 39 H 0.36 6.07 6.56 -89.69 -0.59 5.48 16 40 H 0.36 5.72 8.72 -89.70 -0.78 4.94 16 41 H 0.05 2.27 6.15 -2.39 -0.01 2.26 16 42 H 0.03 1.14 7.73 -2.39 -0.02 1.12 16 Total: -1.00 -63.03 315.96 1.97 -61.06 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.39 Total: 17.40 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 2.98 Total: -15.93 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.41 Total: -99.15 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.12 Total: -10.16 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.79 kcal Total: -63.03 1.97 -61.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.096 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds