Wall clock time and date at job start Tue Mar 31 2020 08:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47054 * 2 1 4 4 H 1.08993 * 109.47367 * 302.19076 * 3 2 1 5 5 C 1.50704 * 109.46825 * 182.18873 * 3 2 1 6 6 H 1.07999 * 120.00162 * 239.99794 * 5 3 2 7 7 C 1.37879 * 120.00098 * 60.00817 * 5 3 2 8 8 N 1.31512 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00234 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47494 * 89.99306 * 9 7 5 11 11 H 1.48499 * 109.47142 * 209.99644 * 9 7 5 12 12 H 1.48505 * 109.47205 * 329.99273 * 9 7 5 13 13 N 1.46897 * 109.46790 * 62.19363 * 3 2 1 14 14 C 1.46847 * 111.00300 * 60.94118 * 13 3 2 15 15 C 1.53035 * 109.52323 * 185.83597 * 14 13 3 16 16 C 1.53122 * 109.31266 * 300.80360 * 15 14 13 17 17 C 1.53197 * 109.11895 * 57.63473 * 16 15 14 18 18 H 1.08996 * 109.49495 * 62.31470 * 17 16 15 19 19 C 1.53004 * 109.49349 * 182.42594 * 17 16 15 20 20 H 1.09000 * 109.46976 * 174.04986 * 19 17 16 21 21 N 1.46895 * 109.47316 * 54.04431 * 19 17 16 22 22 C 1.52996 * 109.46829 * 294.04013 * 19 17 16 23 23 F 1.39899 * 109.47120 * 65.45166 * 22 19 17 24 24 F 1.39902 * 109.47005 * 185.44810 * 22 19 17 25 25 F 1.39894 * 109.47763 * 305.44907 * 22 19 17 26 26 C 1.46853 * 110.99486 * 185.14912 * 13 3 2 27 27 H 1.09000 * 109.46714 * 184.81065 * 1 2 3 28 28 H 1.08993 * 109.47287 * 304.81614 * 1 2 3 29 29 H 1.09000 * 109.46831 * 64.81649 * 1 2 3 30 30 H 1.09000 * 109.47358 * 240.00215 * 2 1 3 31 31 H 1.08997 * 109.46956 * 120.00059 * 2 1 3 32 32 H 0.97004 * 120.00085 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46271 * 65.82536 * 14 13 3 34 34 H 1.08993 * 109.45585 * 305.84796 * 14 13 3 35 35 H 1.08997 * 109.50138 * 60.76274 * 15 14 13 36 36 H 1.09000 * 109.50141 * 180.84174 * 15 14 13 37 37 H 1.09004 * 109.52276 * 177.57978 * 16 15 14 38 38 H 1.09005 * 109.52161 * 297.76417 * 16 15 14 39 39 H 1.00898 * 110.99873 * 176.04662 * 21 19 17 40 40 H 1.00896 * 110.99975 * 300.00437 * 21 19 17 41 41 H 1.08995 * 109.46366 * 294.17402 * 26 13 3 42 42 H 1.08996 * 109.46179 * 54.15094 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6450 1.9676 -0.8696 5 6 3.5461 1.4428 -0.0543 6 1 4.1150 1.9002 0.7416 7 6 4.1976 0.8593 -1.1201 8 7 3.5048 0.3020 -2.0891 9 14 6.0643 0.8602 -1.1878 10 1 6.5845 -0.3607 -0.5214 11 1 6.5083 0.8781 -2.6047 12 1 6.5843 2.0641 -0.4909 13 7 1.5941 2.1194 1.2251 14 6 2.1268 1.4513 2.4193 15 6 1.5274 2.0912 3.6736 16 6 1.8804 3.5809 3.7001 17 6 1.3566 4.2435 2.4220 18 1 0.2703 4.1604 2.3880 19 6 1.7573 5.7201 2.4112 20 1 1.4776 6.1655 1.4565 21 7 3.2098 5.8347 2.5983 22 6 1.0376 6.4521 3.5457 23 9 1.4897 5.9640 4.7763 24 9 1.3059 7.8225 3.4606 25 9 -0.3408 6.2392 3.4376 26 6 1.9610 3.5412 1.2039 27 1 -0.3633 -1.0241 0.0862 28 1 -0.3633 0.5867 0.8436 29 1 -0.3633 0.4373 -0.9300 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9632 -0.1089 -2.8388 33 1 3.2115 1.5566 2.4409 34 1 1.8650 0.3936 2.3907 35 1 0.4438 1.9742 3.6594 36 1 1.9344 1.6049 4.5601 37 1 1.4191 4.0492 4.5696 38 1 2.9628 3.6979 3.7536 39 1 3.5083 6.7961 2.5307 40 1 3.4943 5.4286 3.4770 41 1 3.0464 3.6366 1.2312 42 1 1.5788 4.0014 0.2928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:47 Heat of formation + Delta-G solvation = -161.862211 kcal Electronic energy + Delta-G solvation = -26005.353755 eV Core-core repulsion = 21990.584792 eV Total energy + Delta-G solvation = -4014.768963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.23770 -47.76672 -47.65406 -38.96260 -36.20771 -33.78681 -31.76791 -30.71175 -29.92010 -27.41973 -26.51601 -24.03220 -23.35515 -22.12948 -21.42793 -19.34001 -18.86114 -18.57568 -18.39270 -17.54675 -16.45209 -16.05640 -15.40652 -14.81253 -14.58478 -14.42777 -14.20586 -14.13638 -13.97430 -13.83844 -13.66959 -13.32154 -13.20079 -12.83822 -12.74273 -12.63720 -12.20059 -11.75478 -11.49163 -11.27239 -11.10824 -10.90065 -10.67753 -10.59682 -10.37430 -10.12335 -10.03758 -9.67724 -9.60033 -9.32993 -9.09622 -8.98098 -8.32876 -7.05429 -5.95125 -4.08016 2.67516 3.28644 3.36146 3.39482 3.71333 3.89053 3.94046 4.39688 4.42758 4.77075 4.90864 5.14187 5.29045 5.40358 5.48519 5.68908 5.82196 6.00729 6.09811 6.27870 6.32519 6.36404 6.45402 6.50674 6.56786 6.68182 6.71389 6.78383 6.87994 6.98691 7.10186 7.14399 7.22938 7.38598 7.65843 7.80215 8.02713 8.20484 8.37983 8.51398 9.02298 9.59367 11.03841 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.004995 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.662061 B = 5604.686340 C = 6292.436907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.216 3.784 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.535 5.535 14 C 0.060 3.940 15 C -0.114 4.114 16 C -0.129 4.129 17 C -0.081 4.081 18 H 0.087 0.913 19 C 0.066 3.934 20 H 0.124 0.876 21 N -0.814 5.814 22 C 0.408 3.592 23 F -0.183 7.183 24 F -0.192 7.192 25 F -0.182 7.182 26 C 0.081 3.919 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.347 0.653 40 H 0.352 0.648 41 H 0.055 0.945 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 9.783 10.751 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.167 4.167 17 C -0.100 4.100 18 H 0.105 0.895 19 C -0.050 4.050 20 H 0.142 0.858 21 N -0.345 5.345 22 C 0.351 3.649 23 F -0.164 7.164 24 F -0.174 7.174 25 F -0.163 7.163 26 C -0.047 4.047 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.709 9.210 9.949 14.352 hybrid contribution 1.606 0.813 0.897 2.011 sum -3.104 10.023 10.846 15.091 Atomic orbital electron populations 1.21729 0.98902 0.98440 1.00648 1.21624 0.92162 0.99257 1.01974 1.19235 0.92599 0.90864 0.86368 0.94462 1.21742 0.92693 1.36996 1.06368 0.92486 1.24899 0.97822 0.95146 0.95560 1.69875 1.34921 1.37747 1.10008 0.86702 0.86460 0.78340 0.77134 1.20838 1.21313 1.19999 1.62359 1.58825 1.00988 1.03696 1.21916 0.97319 0.98262 0.89373 1.21588 1.01103 0.94494 0.98006 1.21935 1.01123 0.97008 0.96637 1.21364 1.01449 0.89019 0.98204 0.89488 1.22973 0.88404 0.98648 0.94967 0.85802 1.58778 1.09032 1.24222 1.42505 1.22548 0.78695 0.77870 0.85799 1.93094 1.88876 1.87072 1.47396 1.93156 1.93655 1.34137 1.96406 1.93170 1.32558 1.94497 1.96097 1.21669 0.99318 0.89602 0.94129 0.95727 0.93045 0.94355 0.89093 0.94819 0.92987 0.94547 0.91245 0.91963 0.92603 0.91677 0.91705 0.83843 0.83087 0.92658 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.84 37.16 0.37 -2.43 16 2 C -0.11 -2.59 4.98 -26.73 -0.13 -2.72 16 3 C 0.22 5.14 1.78 -68.86 -0.12 5.01 16 4 H 0.04 1.00 8.08 -51.93 -0.42 0.58 16 5 C -0.54 -14.02 7.19 -34.44 -0.25 -14.27 16 6 H 0.06 1.51 5.84 -52.49 -0.31 1.20 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.64 11.30 55.43 0.63 -24.01 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -10.67 3.89 -228.08 -0.89 -11.56 16 14 C 0.06 1.12 4.80 -3.83 -0.02 1.10 16 15 C -0.11 -1.71 6.09 -26.65 -0.16 -1.87 16 16 C -0.13 -1.77 4.26 -26.57 -0.11 -1.88 16 17 C -0.08 -1.15 2.08 -90.49 -0.19 -1.34 16 18 H 0.09 1.27 7.50 -51.93 -0.39 0.88 16 19 C 0.07 0.77 2.65 -67.72 -0.18 0.59 16 20 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 21 N -0.81 -9.13 8.54 -4.67 -0.04 -9.17 16 22 C 0.41 4.73 2.80 37.16 0.10 4.83 16 23 F -0.18 -2.16 13.62 2.25 0.03 -2.13 16 24 F -0.19 -2.20 17.12 2.25 0.04 -2.16 16 25 F -0.18 -2.30 16.48 2.25 0.04 -2.27 16 26 C 0.08 1.47 4.31 -3.83 -0.02 1.45 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 2.37 6.01 -51.93 -0.31 2.06 16 31 H 0.03 0.77 6.19 -51.93 -0.32 0.45 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.04 0.75 6.62 -51.93 -0.34 0.41 16 34 H 0.07 1.35 5.99 -51.93 -0.31 1.04 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.83 5.65 -51.93 -0.29 0.53 16 38 H 0.06 0.89 6.48 -51.93 -0.34 0.56 16 39 H 0.35 3.20 8.88 -39.29 -0.35 2.85 16 40 H 0.35 3.80 6.40 -39.29 -0.25 3.55 16 41 H 0.06 1.12 6.59 -51.93 -0.34 0.77 16 42 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -26.91 322.73 -7.19 -34.10 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.03 Total: 6.17 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.81 Total: -9.80 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.30 Total: -44.74 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.91 -7.19 -34.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.762 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds