Wall clock time and date at job start Tue Mar 31 2020 08:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47054 * 2 1 4 4 H 1.08993 * 109.47367 * 302.19076 * 3 2 1 5 5 C 1.50704 * 109.46825 * 182.18873 * 3 2 1 6 6 H 1.07999 * 120.00162 * 239.99794 * 5 3 2 7 7 C 1.37879 * 120.00098 * 60.00817 * 5 3 2 8 8 N 1.31512 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00234 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47494 * 89.99306 * 9 7 5 11 11 H 1.48499 * 109.47142 * 209.99644 * 9 7 5 12 12 H 1.48505 * 109.47205 * 329.99273 * 9 7 5 13 13 N 1.46897 * 109.46790 * 62.19363 * 3 2 1 14 14 C 1.46847 * 111.00300 * 60.94118 * 13 3 2 15 15 C 1.53035 * 109.52323 * 185.83597 * 14 13 3 16 16 C 1.53122 * 109.31266 * 300.80360 * 15 14 13 17 17 C 1.53197 * 109.11895 * 57.63473 * 16 15 14 18 18 H 1.08996 * 109.49495 * 62.31470 * 17 16 15 19 19 C 1.53004 * 109.49349 * 182.42594 * 17 16 15 20 20 H 1.09000 * 109.46976 * 174.04986 * 19 17 16 21 21 N 1.46895 * 109.47316 * 54.04431 * 19 17 16 22 22 C 1.52996 * 109.46829 * 294.04013 * 19 17 16 23 23 F 1.39899 * 109.47120 * 65.45166 * 22 19 17 24 24 F 1.39902 * 109.47005 * 185.44810 * 22 19 17 25 25 F 1.39894 * 109.47763 * 305.44907 * 22 19 17 26 26 C 1.46853 * 110.99486 * 185.14912 * 13 3 2 27 27 H 1.09000 * 109.46714 * 184.81065 * 1 2 3 28 28 H 1.08993 * 109.47287 * 304.81614 * 1 2 3 29 29 H 1.09000 * 109.46831 * 64.81649 * 1 2 3 30 30 H 1.09000 * 109.47358 * 240.00215 * 2 1 3 31 31 H 1.08997 * 109.46956 * 120.00059 * 2 1 3 32 32 H 0.97004 * 120.00085 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46271 * 65.82536 * 14 13 3 34 34 H 1.08993 * 109.45585 * 305.84796 * 14 13 3 35 35 H 1.08997 * 109.50138 * 60.76274 * 15 14 13 36 36 H 1.09000 * 109.50141 * 180.84174 * 15 14 13 37 37 H 1.09004 * 109.52276 * 177.57978 * 16 15 14 38 38 H 1.09005 * 109.52161 * 297.76417 * 16 15 14 39 39 H 1.00898 * 110.99873 * 176.04662 * 21 19 17 40 40 H 1.00896 * 110.99975 * 300.00437 * 21 19 17 41 41 H 1.08995 * 109.46366 * 294.17402 * 26 13 3 42 42 H 1.08996 * 109.46179 * 54.15094 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6450 1.9676 -0.8696 5 6 3.5461 1.4428 -0.0543 6 1 4.1150 1.9002 0.7416 7 6 4.1976 0.8593 -1.1201 8 7 3.5048 0.3020 -2.0891 9 14 6.0643 0.8602 -1.1878 10 1 6.5845 -0.3607 -0.5214 11 1 6.5083 0.8781 -2.6047 12 1 6.5843 2.0641 -0.4909 13 7 1.5941 2.1194 1.2251 14 6 2.1268 1.4513 2.4193 15 6 1.5274 2.0912 3.6736 16 6 1.8804 3.5809 3.7001 17 6 1.3566 4.2435 2.4220 18 1 0.2703 4.1604 2.3880 19 6 1.7573 5.7201 2.4112 20 1 1.4776 6.1655 1.4565 21 7 3.2098 5.8347 2.5983 22 6 1.0376 6.4521 3.5457 23 9 1.4897 5.9640 4.7763 24 9 1.3059 7.8225 3.4606 25 9 -0.3408 6.2392 3.4376 26 6 1.9610 3.5412 1.2039 27 1 -0.3633 -1.0241 0.0862 28 1 -0.3633 0.5867 0.8436 29 1 -0.3633 0.4373 -0.9300 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9632 -0.1089 -2.8388 33 1 3.2115 1.5566 2.4409 34 1 1.8650 0.3936 2.3907 35 1 0.4438 1.9742 3.6594 36 1 1.9344 1.6049 4.5601 37 1 1.4191 4.0492 4.5696 38 1 2.9628 3.6979 3.7536 39 1 3.5083 6.7961 2.5307 40 1 3.4943 5.4286 3.4770 41 1 3.0464 3.6366 1.2312 42 1 1.5788 4.0014 0.2928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:46 Heat of formation + Delta-G solvation = -178.568752 kcal Electronic energy + Delta-G solvation = -26006.078205 eV Core-core repulsion = 21990.584792 eV Total energy + Delta-G solvation = -4015.493413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.17134 -48.68638 -48.60107 -40.36323 -37.61052 -35.28262 -33.62652 -32.26255 -31.17877 -28.53506 -28.31686 -25.63508 -24.70883 -23.67402 -22.70736 -20.80533 -20.42994 -19.51827 -19.37024 -18.57466 -18.18294 -17.24416 -17.04477 -16.24146 -15.82141 -15.63054 -15.40432 -15.16455 -15.06686 -14.96705 -14.92192 -14.76295 -14.53870 -14.33781 -14.01193 -14.00179 -13.54946 -13.20435 -13.04758 -12.94500 -12.83098 -12.63539 -12.41368 -12.05799 -11.94028 -11.68204 -11.55636 -11.48070 -11.12721 -10.93287 -10.78323 -10.37812 -10.03851 -8.81466 -7.97350 -6.19802 1.38282 1.40842 1.49185 1.72213 2.43308 2.75216 2.95419 2.98740 3.20217 3.45335 3.56454 3.82986 3.84238 4.16864 4.33022 4.46731 4.51549 4.61155 4.73324 4.78996 4.80235 4.94531 5.01342 5.08247 5.14344 5.17174 5.28877 5.38260 5.40174 5.47243 5.56185 5.58354 5.70530 5.84686 5.86437 6.13016 6.27480 6.30583 6.46757 6.78854 7.02482 7.50768 8.96382 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.004995 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.662061 B = 5604.686340 C = 6292.436907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.531 5.531 14 C 0.063 3.937 15 C -0.107 4.107 16 C -0.125 4.125 17 C -0.072 4.072 18 H 0.089 0.911 19 C 0.072 3.928 20 H 0.131 0.869 21 N -0.823 5.823 22 C 0.416 3.584 23 F -0.182 7.182 24 F -0.189 7.189 25 F -0.187 7.187 26 C 0.086 3.914 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.013 0.987 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.360 0.640 40 H 0.356 0.644 41 H 0.033 0.967 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 10.618 12.466 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.582 4.582 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.254 5.254 14 C -0.066 4.066 15 C -0.144 4.144 16 C -0.162 4.162 17 C -0.091 4.091 18 H 0.107 0.893 19 C -0.043 4.043 20 H 0.149 0.851 21 N -0.356 5.356 22 C 0.359 3.641 23 F -0.163 7.163 24 F -0.170 7.170 25 F -0.168 7.168 26 C -0.042 4.042 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.051 0.949 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.898 10.062 11.683 16.178 hybrid contribution 1.670 0.567 0.360 1.800 sum -3.229 10.630 12.044 16.385 Atomic orbital electron populations 1.21584 0.96273 0.99880 1.00704 1.21460 0.94463 0.98299 1.00268 1.18995 0.91359 0.91270 0.86991 0.98023 1.21963 0.94005 1.36295 1.05923 0.93232 1.25573 1.01600 0.95178 0.95491 1.70003 1.36239 1.38533 1.10452 0.85801 0.81984 0.78282 0.77013 1.20461 1.21137 1.19782 1.62317 1.58461 1.01867 1.02767 1.21923 0.96122 0.98093 0.90442 1.21542 1.01223 0.95195 0.96489 1.21922 1.01309 0.96118 0.96874 1.21204 1.01188 0.90289 0.96452 0.89317 1.22808 0.88830 0.97029 0.95644 0.85104 1.58763 1.08591 1.25367 1.42841 1.22351 0.78280 0.77926 0.85527 1.93093 1.88833 1.87065 1.47345 1.93166 1.93609 1.33848 1.96384 1.93166 1.33000 1.94540 1.96112 1.21611 0.98112 0.88730 0.95784 0.93707 0.92108 0.94930 0.92218 0.94963 0.93107 0.96851 0.92270 0.91373 0.90544 0.89762 0.91704 0.82431 0.82699 0.94909 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.84 71.98 0.71 -4.30 16 2 C -0.11 -5.02 4.98 30.60 0.15 -4.86 16 3 C 0.22 10.82 1.78 44.17 0.08 10.90 16 4 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 5 C -0.54 -28.91 7.19 25.60 0.18 -28.72 16 6 H 0.05 2.67 5.84 -2.91 -0.02 2.65 16 7 C 0.02 1.15 5.30 84.66 0.45 1.60 16 8 N -0.91 -51.97 11.30 21.45 0.24 -51.73 16 9 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 N -0.53 -21.26 3.89 -875.51 -3.41 -24.67 16 14 C 0.06 2.30 4.80 86.32 0.41 2.72 16 15 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 16 C -0.12 -3.11 4.26 30.70 0.13 -2.98 16 17 C -0.07 -1.93 2.08 -10.71 -0.02 -1.95 16 18 H 0.09 2.39 7.50 -2.39 -0.02 2.37 16 19 C 0.07 1.57 2.65 44.92 0.12 1.69 16 20 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 21 N -0.82 -17.04 8.54 -168.69 -1.44 -18.48 16 22 C 0.42 8.62 2.80 71.98 0.20 8.82 16 23 F -0.18 -3.77 13.62 44.97 0.61 -3.16 16 24 F -0.19 -3.85 17.12 44.97 0.77 -3.08 16 25 F -0.19 -4.27 16.48 44.97 0.74 -3.53 16 26 C 0.09 3.11 4.31 86.33 0.37 3.48 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.26 7.53 -2.39 -0.02 2.25 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 3.20 6.01 -2.39 -0.01 3.19 16 31 H 0.03 1.49 6.19 -2.39 -0.01 1.48 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.01 0.55 6.62 -2.39 -0.02 0.53 16 34 H 0.06 2.28 5.99 -2.39 -0.01 2.26 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.85 5.65 -2.38 -0.01 1.84 16 38 H 0.06 1.65 6.48 -2.38 -0.02 1.63 16 39 H 0.36 5.92 8.88 -89.70 -0.80 5.12 16 40 H 0.36 6.95 6.40 -89.70 -0.57 6.38 16 41 H 0.03 1.34 6.59 -2.39 -0.02 1.32 16 42 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 Total: -1.00 -58.18 322.73 2.21 -55.97 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.31 Total: 19.44 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 2.97 Total: -16.38 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -4.61 Total: -94.87 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 2.12 Total: -9.77 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -58.18 2.21 -55.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.599 kcal (2) G-P(sol) polarization free energy of solvation -58.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds