Wall clock time and date at job start Tue Mar 31 2020 08:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47088 * 2 1 4 4 C 1.42902 * 114.00454 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47287 * 180.02562 * 4 3 2 6 6 N 1.30768 * 127.01362 * 90.02652 * 5 4 3 7 7 O 1.21562 * 111.69959 * 179.97438 * 6 5 4 8 8 C 1.32879 * 111.23076 * 359.91134 * 7 6 5 9 9 C 1.35739 * 106.53207 * 359.92386 * 8 7 6 10 10 C 1.50042 * 124.15028 * 179.31543 * 9 8 7 11 11 N 1.47474 * 108.18358 * 344.60936 * 10 9 8 12 12 C 1.46897 * 111.00421 * 286.08928 * 11 10 9 13 13 H 1.08999 * 109.46811 * 40.11796 * 12 11 10 14 14 C 1.50702 * 109.47097 * 160.11905 * 12 11 10 15 15 H 1.07994 * 120.00103 * 5.86635 * 14 12 11 16 16 C 1.37877 * 119.99629 * 185.86260 * 14 12 11 17 17 N 1.31514 * 120.00015 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99971 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47113 * 119.99879 * 18 16 14 21 21 H 1.48493 * 109.47628 * 240.00105 * 18 16 14 22 22 C 1.53007 * 109.46983 * 280.11957 * 12 11 10 23 23 C 1.52997 * 109.47194 * 65.20840 * 22 12 11 24 24 C 1.46944 * 111.49666 * 50.40402 * 11 10 9 25 25 C 1.50623 * 130.63067 * 180.32044 * 8 7 6 26 26 H 1.09000 * 109.47022 * 299.99232 * 1 2 3 27 27 H 1.08996 * 109.47837 * 59.99987 * 1 2 3 28 28 H 1.09001 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47022 * 240.00767 * 2 1 3 30 30 H 1.08996 * 109.47837 * 120.00012 * 2 1 3 31 31 H 1.08999 * 109.47028 * 300.00426 * 4 3 2 32 32 H 1.08996 * 109.47157 * 59.99773 * 4 3 2 33 33 H 1.09006 * 109.88054 * 224.83295 * 10 9 8 34 34 H 1.09004 * 109.56429 * 104.21015 * 10 9 8 35 35 H 0.97008 * 119.99686 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46876 * 185.21093 * 22 12 11 37 37 H 1.09001 * 109.46947 * 305.20850 * 22 12 11 38 38 H 1.09004 * 109.47389 * 283.04529 * 23 22 12 39 39 H 1.08999 * 109.47255 * 43.03677 * 23 22 12 40 40 H 1.08990 * 109.47249 * 163.03984 * 23 22 12 41 41 H 1.08997 * 109.40115 * 168.71057 * 24 11 10 42 42 H 1.09008 * 109.40192 * 48.95780 * 24 11 10 43 43 H 1.09000 * 109.79931 * 283.57339 * 25 8 7 44 44 H 1.08999 * 109.79703 * 44.37782 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 0.0001 6 7 4.0232 3.6762 1.0446 7 8 4.3257 4.8091 0.7241 8 6 4.3620 4.9418 -0.5975 9 6 4.0408 3.7293 -1.1164 10 6 3.9497 3.4393 -2.5857 11 7 3.8927 4.7250 -3.3059 12 6 2.5769 5.3587 -3.1486 13 1 2.2294 5.2250 -2.1242 14 6 2.6885 6.8304 -3.4532 15 1 3.6173 7.2357 -3.8264 16 6 1.6047 7.6594 -3.2553 17 7 0.4737 7.1659 -2.8004 18 14 1.7427 9.4835 -3.6335 19 1 3.1097 9.7841 -4.1299 20 1 0.7475 9.8503 -4.6729 21 1 1.4807 10.2662 -2.3991 22 6 1.5808 4.7123 -4.1135 23 6 1.3692 3.2482 -3.7230 24 6 4.9679 5.6303 -2.8774 25 6 4.6880 6.1366 -1.4547 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8340 0.9765 0.8891 32 1 3.8333 0.9768 -0.8908 33 1 3.0499 2.8605 -2.7943 34 1 4.8293 2.8787 -2.9023 35 1 -0.2889 7.7492 -2.6616 36 1 0.6300 5.2428 -4.0634 37 1 1.9729 4.7644 -5.1292 38 1 2.2231 2.6569 -4.0536 39 1 1.2717 3.1715 -2.6401 40 1 0.4622 2.8732 -4.1969 41 1 5.0204 6.4786 -3.5599 42 1 5.9181 5.0963 -2.8914 43 1 3.8421 6.8240 -1.4671 44 1 5.5696 6.6432 -1.0620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:25 Heat of formation + Delta-G solvation = 33.066650 kcal Electronic energy + Delta-G solvation = -25551.072474 eV Core-core repulsion = 22086.613001 eV Total energy + Delta-G solvation = -3464.459473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.49655 -38.63637 -38.03409 -34.20038 -33.58897 -32.11132 -31.21309 -30.61795 -29.57521 -27.29320 -26.85571 -24.48921 -23.33551 -22.81814 -22.26186 -20.81739 -20.19252 -18.37637 -17.33241 -16.85050 -16.44593 -16.38243 -15.97261 -15.12555 -14.80926 -14.16474 -14.05684 -13.90724 -13.41463 -13.05770 -12.80839 -12.70780 -12.53742 -12.27019 -12.19939 -11.97307 -11.78516 -11.47936 -11.25527 -11.20264 -11.03711 -10.91503 -10.72920 -10.60392 -10.22954 -10.03622 -9.80978 -9.66400 -9.64212 -9.24826 -8.75992 -8.55930 -8.29438 -7.33471 -6.07677 -4.12442 1.89844 2.48817 3.25704 3.35108 3.36458 3.49774 3.86364 4.35035 4.51091 4.80267 4.98274 5.04941 5.09743 5.23811 5.25838 5.29221 5.40922 5.51581 5.58224 5.63521 5.78738 5.85902 5.91443 6.02394 6.10139 6.11037 6.18598 6.24524 6.32284 6.39665 6.48158 6.58359 6.64822 6.86047 6.96912 7.14151 7.15880 7.31997 7.51346 7.69485 7.80580 8.05619 8.24454 8.51932 8.64599 8.95160 9.51936 10.99521 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.005776 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.911856 B = 4846.211829 C = 5556.359776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.377 6.377 4 C 0.151 3.849 5 C 0.026 3.974 6 N -0.370 5.370 7 O 0.102 5.898 8 C -0.010 4.010 9 C -0.224 4.224 10 C 0.101 3.899 11 N -0.527 5.527 12 C 0.212 3.788 13 H 0.016 0.984 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.890 3.110 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.103 4.103 23 C -0.152 4.152 24 C 0.076 3.924 25 C -0.077 4.077 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -10.833 2.450 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.296 6.296 4 C 0.074 3.926 5 C -0.132 4.132 6 N -0.078 5.078 7 O 0.038 5.962 8 C -0.075 4.075 9 C -0.230 4.230 10 C -0.028 4.028 11 N -0.249 5.249 12 C 0.106 3.894 13 H 0.033 0.967 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.717 3.283 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.142 4.142 23 C -0.209 4.209 24 C -0.053 4.053 25 C -0.117 4.117 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.168 -10.938 3.294 12.538 hybrid contribution -0.130 0.863 0.125 0.882 sum 5.039 -10.074 3.419 11.771 Atomic orbital electron populations 1.21738 0.93560 1.02009 1.03610 1.22467 0.95865 0.83583 0.99910 1.88040 1.19737 1.26425 1.95370 1.20346 0.82315 0.88787 1.01189 1.22444 1.03809 0.97490 0.89449 1.74211 1.18681 0.91092 1.23816 1.84621 1.64159 1.24388 1.23037 1.24396 1.01003 0.99162 0.82956 1.21639 1.08322 0.93320 0.99744 1.21345 1.03253 0.95094 0.83064 1.62477 1.06349 1.02976 1.53107 1.19376 0.82774 0.92474 0.94728 0.96677 1.21389 0.98421 0.91845 1.44240 0.91272 1.24959 0.95345 0.98592 0.95029 1.69956 1.02158 1.35217 1.44729 0.86574 0.78275 0.85417 0.77992 1.19587 1.21031 1.21123 1.21492 1.01731 0.92331 0.98648 1.22101 0.98806 0.99529 1.00430 1.22103 0.93572 0.97508 0.92129 1.21306 1.04216 0.92845 0.93314 0.91877 0.91418 0.91177 0.93186 0.93563 0.92038 0.91076 0.87040 0.91177 0.92921 0.89942 0.93944 0.93482 0.93407 0.94982 0.88295 0.92948 0.85491 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.68 6.66 37.16 0.25 0.93 16 3 O -0.38 -6.11 10.33 -35.23 -0.36 -6.48 16 4 C 0.15 2.24 6.52 36.01 0.23 2.48 16 5 C 0.03 0.47 6.95 -82.43 -0.57 -0.10 16 6 N -0.37 -7.38 12.11 33.45 0.41 -6.98 16 7 O 0.10 2.04 11.19 19.90 0.22 2.26 16 8 C -0.01 -0.20 6.89 -35.24 -0.24 -0.44 16 9 C -0.22 -4.28 5.40 -105.22 -0.57 -4.85 16 10 C 0.10 1.83 5.70 -4.98 -0.03 1.80 16 11 N -0.53 -10.54 4.79 -228.95 -1.10 -11.64 16 12 C 0.21 4.97 0.94 -68.86 -0.06 4.91 16 13 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16 14 C -0.52 -12.91 5.97 -34.44 -0.21 -13.11 16 15 H 0.07 1.66 5.46 -52.49 -0.29 1.37 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.88 -24.36 11.75 55.43 0.65 -23.71 16 18 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.10 -2.38 5.49 -26.73 -0.15 -2.53 16 23 C -0.15 -2.98 8.21 37.16 0.30 -2.68 16 24 C 0.08 1.36 5.31 -3.50 -0.02 1.34 16 25 C -0.08 -1.41 5.70 -27.62 -0.16 -1.57 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 2.05 3.32 -51.93 -0.17 1.88 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.08 2.14 6.45 -51.93 -0.34 1.80 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.83 6.32 -51.93 -0.33 0.51 16 39 H 0.05 1.01 7.34 -51.93 -0.38 0.62 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.81 5.98 -51.93 -0.31 1.50 16 42 H 0.05 0.82 8.08 -51.92 -0.42 0.41 16 43 H 0.13 2.70 6.04 -51.93 -0.31 2.39 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -28.89 339.78 -7.69 -36.58 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.67 Total: 3.23 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.93 Total: -13.53 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.04 Total: -42.32 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.14 Total: -4.22 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.89 -7.69 -36.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.644 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds