Wall clock time and date at job start Tue Mar 31 2020 08:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47088 * 2 1 4 4 C 1.42902 * 114.00454 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47287 * 180.02562 * 4 3 2 6 6 N 1.30768 * 127.01362 * 90.02652 * 5 4 3 7 7 O 1.21562 * 111.69959 * 179.97438 * 6 5 4 8 8 C 1.32879 * 111.23076 * 359.91134 * 7 6 5 9 9 C 1.35739 * 106.53207 * 359.92386 * 8 7 6 10 10 C 1.50042 * 124.15028 * 179.31543 * 9 8 7 11 11 N 1.47474 * 108.18358 * 344.60936 * 10 9 8 12 12 C 1.46897 * 111.00421 * 286.08928 * 11 10 9 13 13 H 1.08999 * 109.46811 * 40.11796 * 12 11 10 14 14 C 1.50702 * 109.47097 * 160.11905 * 12 11 10 15 15 H 1.07994 * 120.00103 * 5.86635 * 14 12 11 16 16 C 1.37877 * 119.99629 * 185.86260 * 14 12 11 17 17 N 1.31514 * 120.00015 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99971 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47113 * 119.99879 * 18 16 14 21 21 H 1.48493 * 109.47628 * 240.00105 * 18 16 14 22 22 C 1.53007 * 109.46983 * 280.11957 * 12 11 10 23 23 C 1.52997 * 109.47194 * 65.20840 * 22 12 11 24 24 C 1.46944 * 111.49666 * 50.40402 * 11 10 9 25 25 C 1.50623 * 130.63067 * 180.32044 * 8 7 6 26 26 H 1.09000 * 109.47022 * 299.99232 * 1 2 3 27 27 H 1.08996 * 109.47837 * 59.99987 * 1 2 3 28 28 H 1.09001 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47022 * 240.00767 * 2 1 3 30 30 H 1.08996 * 109.47837 * 120.00012 * 2 1 3 31 31 H 1.08999 * 109.47028 * 300.00426 * 4 3 2 32 32 H 1.08996 * 109.47157 * 59.99773 * 4 3 2 33 33 H 1.09006 * 109.88054 * 224.83295 * 10 9 8 34 34 H 1.09004 * 109.56429 * 104.21015 * 10 9 8 35 35 H 0.97008 * 119.99686 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46876 * 185.21093 * 22 12 11 37 37 H 1.09001 * 109.46947 * 305.20850 * 22 12 11 38 38 H 1.09004 * 109.47389 * 283.04529 * 23 22 12 39 39 H 1.08999 * 109.47255 * 43.03677 * 23 22 12 40 40 H 1.08990 * 109.47249 * 163.03984 * 23 22 12 41 41 H 1.08997 * 109.40115 * 168.71057 * 24 11 10 42 42 H 1.09008 * 109.40192 * 48.95780 * 24 11 10 43 43 H 1.09000 * 109.79931 * 283.57339 * 25 8 7 44 44 H 1.08999 * 109.79703 * 44.37782 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 0.0001 6 7 4.0232 3.6762 1.0446 7 8 4.3257 4.8091 0.7241 8 6 4.3620 4.9418 -0.5975 9 6 4.0408 3.7293 -1.1164 10 6 3.9497 3.4393 -2.5857 11 7 3.8927 4.7250 -3.3059 12 6 2.5769 5.3587 -3.1486 13 1 2.2294 5.2250 -2.1242 14 6 2.6885 6.8304 -3.4532 15 1 3.6173 7.2357 -3.8264 16 6 1.6047 7.6594 -3.2553 17 7 0.4737 7.1659 -2.8004 18 14 1.7427 9.4835 -3.6335 19 1 3.1097 9.7841 -4.1299 20 1 0.7475 9.8503 -4.6729 21 1 1.4807 10.2662 -2.3991 22 6 1.5808 4.7123 -4.1135 23 6 1.3692 3.2482 -3.7230 24 6 4.9679 5.6303 -2.8774 25 6 4.6880 6.1366 -1.4547 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8340 0.9765 0.8891 32 1 3.8333 0.9768 -0.8908 33 1 3.0499 2.8605 -2.7943 34 1 4.8293 2.8787 -2.9023 35 1 -0.2889 7.7492 -2.6616 36 1 0.6300 5.2428 -4.0634 37 1 1.9729 4.7644 -5.1292 38 1 2.2231 2.6569 -4.0536 39 1 1.2717 3.1715 -2.6401 40 1 0.4622 2.8732 -4.1969 41 1 5.0204 6.4786 -3.5599 42 1 5.9181 5.0963 -2.8914 43 1 3.8421 6.8240 -1.4671 44 1 5.5696 6.6432 -1.0620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255171987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:25 Heat of formation + Delta-G solvation = 14.715496 kcal Electronic energy + Delta-G solvation = -25551.868240 eV Core-core repulsion = 22086.613001 eV Total energy + Delta-G solvation = -3465.255238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.96528 -40.21501 -39.13657 -35.77823 -35.13843 -33.93205 -32.23754 -32.12785 -31.12820 -28.98425 -28.11994 -26.20523 -24.90165 -23.86994 -23.71004 -22.33316 -21.80975 -19.96046 -18.76111 -18.34453 -18.25579 -17.54752 -17.04737 -16.81513 -16.17535 -15.88712 -15.62476 -15.35959 -14.68531 -14.45221 -14.33456 -14.10744 -13.93238 -13.68230 -13.56950 -13.37875 -13.14245 -12.99993 -12.76053 -12.63666 -12.49940 -12.42708 -12.21455 -12.07915 -11.87446 -11.75027 -11.46685 -11.31545 -10.86190 -10.66145 -10.60524 -10.46745 -9.83718 -8.99731 -8.06503 -6.15206 0.41975 1.07992 1.43857 1.47797 1.56852 2.04632 2.45916 2.74224 3.21195 3.25360 3.43940 3.64228 3.91642 4.10326 4.11902 4.16163 4.22946 4.34114 4.37896 4.48293 4.56261 4.56626 4.62063 4.64086 4.73315 4.80379 4.82224 4.84241 4.95506 5.00701 5.08887 5.11830 5.24355 5.28194 5.31543 5.38925 5.56445 5.71786 5.78612 5.91084 6.17186 6.26515 6.40792 6.75878 7.02380 7.16422 7.52839 9.00832 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.005776 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.911856 B = 4846.211829 C = 5556.359776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.149 3.851 5 C 0.025 3.975 6 N -0.391 5.391 7 O 0.086 5.914 8 C -0.025 4.025 9 C -0.232 4.232 10 C 0.103 3.897 11 N -0.529 5.529 12 C 0.225 3.775 13 H -0.029 1.029 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.948 3.052 19 H -0.255 1.255 20 H -0.289 1.289 21 H -0.291 1.291 22 C -0.102 4.102 23 C -0.136 4.136 24 C 0.075 3.925 25 C -0.073 4.073 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.256 0.744 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -12.367 1.569 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.334 6.334 4 C 0.073 3.927 5 C -0.132 4.132 6 N -0.101 5.101 7 O 0.025 5.975 8 C -0.090 4.090 9 C -0.238 4.238 10 C -0.025 4.025 11 N -0.250 5.250 12 C 0.118 3.882 13 H -0.011 1.011 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.775 3.225 19 H -0.179 1.179 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.141 4.141 23 C -0.193 4.193 24 C -0.054 4.054 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.993 -12.461 2.403 14.489 hybrid contribution -0.682 1.270 0.425 1.503 sum 6.310 -11.191 2.828 13.155 Atomic orbital electron populations 1.21788 0.93486 1.03554 1.02105 1.22742 0.95972 0.81907 1.01798 1.87991 1.20354 1.29328 1.95724 1.20571 0.82174 0.86587 1.03417 1.23093 1.02325 0.99110 0.88721 1.74190 1.19854 0.91332 1.24761 1.84586 1.64787 1.24749 1.23365 1.24698 1.01385 0.99915 0.83031 1.21880 1.08071 0.93396 1.00448 1.21433 1.04592 0.94199 0.82262 1.62415 1.05008 1.03844 1.53722 1.19036 0.84663 0.92321 0.92140 1.01119 1.21735 0.98326 0.92816 1.42582 0.90337 1.25679 0.95202 1.02365 0.95332 1.70110 1.02892 1.36330 1.46727 0.85646 0.78727 0.80924 0.77226 1.17864 1.21491 1.21715 1.21366 0.99899 0.94200 0.98606 1.21924 1.00654 0.97531 0.99168 1.22192 0.94110 0.97538 0.91510 1.21230 1.04116 0.92086 0.93759 0.93208 0.93081 0.88090 0.91108 0.91698 0.90317 0.88236 0.87329 0.87884 0.93482 0.93516 0.93823 0.90848 0.95342 0.93619 0.88596 0.89732 0.89009 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.05 1.08 6.66 71.98 0.48 1.56 16 3 O -0.41 -12.94 10.33 -148.98 -1.54 -14.48 16 4 C 0.15 4.13 6.52 71.24 0.46 4.59 16 5 C 0.03 0.92 6.95 43.12 0.30 1.22 16 6 N -0.39 -15.57 12.11 -48.62 -0.59 -16.16 16 7 O 0.09 3.48 11.19 81.18 0.91 4.39 16 8 C -0.03 -0.98 6.89 25.08 0.17 -0.81 16 9 C -0.23 -8.60 5.40 -20.25 -0.11 -8.71 16 10 C 0.10 3.50 5.70 85.24 0.49 3.98 16 11 N -0.53 -20.28 4.79 -878.28 -4.21 -24.48 16 12 C 0.23 10.64 0.94 44.17 0.04 10.68 16 13 H -0.03 -1.62 6.58 -2.39 -0.02 -1.63 16 14 C -0.52 -25.75 5.97 25.60 0.15 -25.60 16 15 H 0.08 3.70 5.46 -2.91 -0.02 3.68 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -52.79 11.75 21.45 0.25 -52.54 16 18 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 C -0.10 -4.73 5.49 30.60 0.17 -4.56 16 23 C -0.14 -5.23 8.21 71.98 0.59 -4.64 16 24 C 0.07 2.53 5.31 86.49 0.46 2.99 16 25 C -0.07 -2.59 5.70 30.02 0.17 -2.42 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.11 3.76 3.32 -2.38 -0.01 3.75 16 34 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 35 H 0.26 14.22 8.31 -92.70 -0.77 13.44 16 36 H 0.05 2.50 6.45 -2.39 -0.02 2.48 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.42 6.32 -2.38 -0.02 2.41 16 39 H 0.03 1.19 7.34 -2.39 -0.02 1.17 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 3.30 5.98 -2.39 -0.01 3.29 16 42 H 0.08 2.35 8.08 -2.38 -0.02 2.33 16 43 H 0.09 3.98 6.04 -2.39 -0.01 3.97 16 44 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -64.72 339.78 2.42 -62.30 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.00 Total: 19.97 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.57 Total: -22.96 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.54 Total: -93.18 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.63 Total: -10.09 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -64.72 2.42 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.016 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds