Wall clock time and date at job start Tue Mar 31 2020 08:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 H 1.08996 * 109.47847 * 182.23981 * 3 2 1 5 5 C 1.50706 * 109.47428 * 62.23480 * 3 2 1 6 6 H 1.07996 * 120.00306 * 244.32960 * 5 3 2 7 7 C 1.37879 * 119.99327 * 64.32549 * 5 3 2 8 8 N 1.31509 * 120.00383 * 8.11234 * 7 5 3 9 9 Si 1.86799 * 119.99685 * 188.10854 * 7 5 3 10 10 H 1.48504 * 109.47385 * 90.00350 * 9 7 5 11 11 H 1.48508 * 109.47162 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.47252 * 330.00115 * 9 7 5 13 13 N 1.46899 * 109.47089 * 302.24270 * 3 2 1 14 14 C 1.46848 * 110.99929 * 301.94983 * 13 3 2 15 15 C 1.53058 * 109.50578 * 174.07061 * 14 13 3 16 16 C 1.52963 * 109.28099 * 58.98509 * 15 14 13 17 17 C 1.52951 * 109.44637 * 302.58234 * 16 15 14 18 18 C 1.46845 * 111.00428 * 177.68199 * 13 3 2 19 19 C 1.53092 * 109.61198 * 62.84237 * 16 15 14 20 20 C 1.50614 * 109.19148 * 64.55016 * 19 16 15 21 21 O 1.21222 * 119.36863 * 208.90771 * 20 19 16 22 22 N 1.34138 * 121.26009 * 28.90888 * 20 19 16 23 23 C 1.34143 * 122.65139 * 359.39887 * 22 20 19 24 24 O 1.21227 * 119.36270 * 180.60231 * 23 22 20 25 25 C 1.50613 * 121.26891 * 0.61454 * 23 22 20 26 26 H 1.08998 * 109.47428 * 184.12481 * 1 2 3 27 27 H 1.09006 * 109.47173 * 304.12803 * 1 2 3 28 28 H 1.09005 * 109.46690 * 64.12449 * 1 2 3 29 29 H 1.08999 * 109.47329 * 239.99351 * 2 1 3 30 30 H 1.09007 * 109.46303 * 119.99589 * 2 1 3 31 31 H 0.96998 * 120.00261 * 4.64454 * 8 7 5 32 32 H 1.09000 * 109.46591 * 294.08557 * 14 13 3 33 33 H 1.09006 * 109.46368 * 54.05795 * 14 13 3 34 34 H 1.09008 * 109.50591 * 299.04229 * 15 14 13 35 35 H 1.09001 * 109.53621 * 178.95067 * 15 14 13 36 36 H 1.09000 * 109.50332 * 297.46651 * 17 16 15 37 37 H 1.08998 * 109.50196 * 177.35216 * 17 16 15 38 38 H 1.08999 * 109.46214 * 305.93506 * 18 13 3 39 39 H 1.08999 * 109.46092 * 65.90711 * 18 13 3 40 40 H 1.08997 * 109.52113 * 184.44724 * 19 16 15 41 41 H 1.09002 * 109.51727 * 304.62321 * 19 16 15 42 42 H 0.97002 * 118.67454 * 179.36832 * 22 20 19 43 43 H 1.09002 * 109.51896 * 211.15830 * 25 23 22 44 44 H 1.08999 * 109.52016 * 90.97416 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4427 -0.0402 5 6 1.5836 2.1368 1.2573 6 1 0.9035 2.9734 1.1956 7 6 2.0343 1.7038 2.4863 8 7 2.9811 0.7938 2.5562 9 14 1.3000 2.4098 4.0520 10 1 0.1352 1.5875 4.4672 11 1 2.3233 2.3974 5.1282 12 1 0.8577 3.8059 3.8057 13 7 1.5068 2.1504 -1.1714 14 6 1.8936 1.4742 -2.4162 15 6 1.2012 2.1506 -3.6018 16 6 1.6056 3.6251 -3.6488 17 6 1.2405 4.2957 -2.3235 18 6 1.9316 3.5560 -1.1754 19 6 3.1144 3.7368 -3.8831 20 6 3.4473 3.1773 -5.2412 21 8 4.5389 2.6853 -5.4302 22 7 2.5589 3.2130 -6.2456 23 6 1.3293 3.7308 -6.1062 24 8 0.5701 3.7225 -7.0513 25 6 0.8740 4.3227 -4.7983 26 1 -0.3634 -1.0250 0.0739 27 1 -0.3634 0.5766 0.8507 28 1 -0.3633 0.4485 -0.9247 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.4095 0.4763 1.7459 32 1 2.9744 1.5367 -2.5428 33 1 1.5935 0.4273 -2.3692 34 1 0.1202 2.0733 -3.4844 35 1 1.5025 1.6609 -4.5278 36 1 0.1603 4.2586 -2.1823 37 1 1.5707 5.3344 -2.3382 38 1 1.6591 4.0205 -0.2277 39 1 3.0123 3.6084 -1.3079 40 1 3.4134 4.7840 -3.8377 41 1 3.6448 3.1721 -3.1164 42 1 2.8161 2.8502 -7.1077 43 1 -0.2006 4.1775 -4.6873 44 1 1.1021 5.3884 -4.7817 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:19 Heat of formation + Delta-G solvation = -81.292965 kcal Electronic energy + Delta-G solvation = -25475.896828 eV Core-core repulsion = 22006.478350 eV Total energy + Delta-G solvation = -3469.418478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98393 -39.11673 -38.91376 -36.31406 -34.78684 -32.94896 -31.31843 -30.46287 -29.14167 -28.55579 -25.63603 -23.99474 -23.42331 -22.64929 -22.35018 -20.09744 -19.41259 -18.59327 -17.63895 -17.11802 -16.85591 -16.28673 -15.60898 -15.04390 -14.79259 -14.63292 -14.26281 -14.11152 -13.95283 -13.71247 -13.47963 -13.11718 -12.96576 -12.33043 -12.16941 -11.89839 -11.73858 -11.58115 -11.12734 -11.05678 -10.92436 -10.85252 -10.82051 -10.52705 -10.43561 -10.30612 -10.14446 -10.11620 -9.97739 -9.81800 -9.61574 -8.46494 -8.40797 -7.31177 -6.36127 -4.07248 1.31761 2.56637 2.62348 3.42481 3.43517 3.59527 3.80932 4.22972 4.31538 4.42760 4.47757 4.69627 4.80151 5.10433 5.11487 5.27396 5.33889 5.41306 5.49600 5.53193 5.67747 5.73506 5.82805 5.88299 5.95676 5.98407 6.13813 6.26845 6.30236 6.34986 6.44254 6.53952 6.63093 6.64974 6.87087 7.04577 7.13665 7.15688 7.33568 7.46343 7.62930 7.84493 7.97485 8.33521 8.55175 8.84039 9.61728 10.99425 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.004276 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.837104 B = 6546.555375 C = 6601.462436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.206 3.794 4 H -0.012 1.012 5 C -0.579 4.579 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 1.065 2.935 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.520 5.520 14 C 0.048 3.952 15 C -0.110 4.110 16 C -0.060 4.060 17 C -0.101 4.101 18 C 0.062 3.938 19 C -0.140 4.140 20 C 0.530 3.470 21 O -0.505 6.505 22 N -0.677 5.677 23 C 0.530 3.470 24 O -0.510 6.510 25 C -0.133 4.133 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.270 0.730 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.021 0.979 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.409 0.591 43 H 0.116 0.884 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 7.232 -12.859 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 C 0.100 3.900 4 H 0.005 0.995 5 C -0.618 4.618 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.894 3.106 10 H -0.215 1.215 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.244 5.244 14 C -0.080 4.080 15 C -0.148 4.148 16 C -0.060 4.060 17 C -0.139 4.139 18 C -0.066 4.066 19 C -0.179 4.179 20 C 0.319 3.681 21 O -0.377 6.377 22 N -0.342 5.342 23 C 0.320 3.680 24 O -0.383 6.383 25 C -0.173 4.173 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.039 0.961 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.248 0.752 43 H 0.135 0.865 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.327 6.929 -11.539 13.864 hybrid contribution 1.063 -0.159 -2.198 2.447 sum -2.264 6.770 -13.737 15.481 Atomic orbital electron populations 1.21438 0.96249 0.97982 1.02053 1.21633 0.96457 0.98278 0.99035 1.19360 0.91863 0.90741 0.88061 0.99470 1.21821 1.30699 1.18217 0.91030 0.92437 1.25673 0.95449 0.95506 1.01585 1.70754 1.22760 1.28684 1.32596 0.83596 0.75915 0.75529 0.75544 1.21467 1.21343 1.21526 1.61927 1.59985 1.01165 1.01368 1.22120 0.96372 0.99051 0.90497 1.21745 1.02350 0.92782 0.97931 1.20720 0.92260 0.97221 0.95836 1.21656 1.02348 0.98002 0.91899 1.21994 0.95845 0.90200 0.98610 1.22197 0.98364 1.04286 0.93062 1.21077 0.83315 0.76980 0.86700 1.90784 1.22096 1.41585 1.83269 1.44916 1.15477 1.57518 1.16321 1.21056 0.80161 0.75666 0.91138 1.90776 1.52268 1.53741 1.41503 1.22072 1.03760 1.01780 0.89653 0.96283 0.91801 0.93604 0.96040 0.91629 0.91907 0.96004 0.90543 0.90077 0.92939 0.90288 0.91550 0.88895 0.96131 0.87080 0.86241 0.75243 0.86546 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.52 37.16 0.35 -2.09 16 2 C -0.12 -2.55 4.91 -26.73 -0.13 -2.68 16 3 C 0.21 4.68 1.39 -68.86 -0.10 4.59 16 4 H -0.01 -0.31 7.48 -51.93 -0.39 -0.70 16 5 C -0.58 -14.54 6.46 -34.44 -0.22 -14.76 16 6 H 0.06 1.46 6.73 -52.49 -0.35 1.10 16 7 C 0.02 0.59 5.20 -17.82 -0.09 0.50 16 8 N -0.91 -25.86 12.82 55.43 0.71 -25.15 16 9 Si 1.07 23.89 29.91 -169.99 -5.08 18.80 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 13 N -0.52 -9.54 3.73 -228.05 -0.85 -10.39 16 14 C 0.05 0.77 4.91 -3.82 -0.02 0.75 16 15 C -0.11 -1.37 4.52 -26.72 -0.12 -1.50 16 16 C -0.06 -0.62 0.51 -154.47 -0.08 -0.70 16 17 C -0.10 -1.15 4.89 -26.72 -0.13 -1.28 16 18 C 0.06 1.00 4.99 -3.82 -0.02 0.98 16 19 C -0.14 -1.47 4.26 -27.88 -0.12 -1.59 16 20 C 0.53 6.23 6.84 -11.31 -0.08 6.15 16 21 O -0.50 -7.69 17.87 5.61 0.10 -7.59 16 22 N -0.68 -6.96 4.78 -11.74 -0.06 -7.01 16 23 C 0.53 5.59 6.92 -11.31 -0.08 5.51 16 24 O -0.51 -6.91 17.88 5.60 0.10 -6.81 16 25 C -0.13 -1.12 4.86 -27.89 -0.14 -1.26 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.42 7.15 -51.93 -0.37 1.05 16 28 H 0.04 0.87 7.65 -51.93 -0.40 0.47 16 29 H 0.02 0.43 6.37 -51.93 -0.33 0.10 16 30 H 0.07 1.62 6.32 -51.93 -0.33 1.30 16 31 H 0.27 7.68 6.22 -40.82 -0.25 7.42 16 32 H 0.02 0.37 6.45 -51.93 -0.33 0.03 16 33 H 0.08 1.29 6.00 -51.93 -0.31 0.98 16 34 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.05 0.64 6.49 -51.93 -0.34 0.30 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.72 6.22 -51.93 -0.32 1.40 16 39 H 0.02 0.34 6.66 -51.93 -0.35 -0.01 16 40 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.12 1.52 5.01 -51.93 -0.26 1.26 16 42 H 0.41 3.85 8.79 -40.82 -0.36 3.49 16 43 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -30.19 329.02 -7.54 -37.73 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.45 Total: 2.84 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.97 Total: -7.37 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.20 Total: -42.55 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.20 Total: -14.40 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.08 Total: 18.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.19 -7.54 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.568 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds