Wall clock time and date at job start Tue Mar 31 2020 08:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 H 1.08996 * 109.47847 * 182.23981 * 3 2 1 5 5 C 1.50706 * 109.47428 * 62.23480 * 3 2 1 6 6 H 1.07996 * 120.00306 * 244.32960 * 5 3 2 7 7 C 1.37879 * 119.99327 * 64.32549 * 5 3 2 8 8 N 1.31509 * 120.00383 * 8.11234 * 7 5 3 9 9 Si 1.86799 * 119.99685 * 188.10854 * 7 5 3 10 10 H 1.48504 * 109.47385 * 90.00350 * 9 7 5 11 11 H 1.48508 * 109.47162 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.47252 * 330.00115 * 9 7 5 13 13 N 1.46899 * 109.47089 * 302.24270 * 3 2 1 14 14 C 1.46848 * 110.99929 * 301.94983 * 13 3 2 15 15 C 1.53058 * 109.50578 * 174.07061 * 14 13 3 16 16 C 1.52963 * 109.28099 * 58.98509 * 15 14 13 17 17 C 1.52951 * 109.44637 * 302.58234 * 16 15 14 18 18 C 1.46845 * 111.00428 * 177.68199 * 13 3 2 19 19 C 1.53092 * 109.61198 * 62.84237 * 16 15 14 20 20 C 1.50614 * 109.19148 * 64.55016 * 19 16 15 21 21 O 1.21222 * 119.36863 * 208.90771 * 20 19 16 22 22 N 1.34138 * 121.26009 * 28.90888 * 20 19 16 23 23 C 1.34143 * 122.65139 * 359.39887 * 22 20 19 24 24 O 1.21227 * 119.36270 * 180.60231 * 23 22 20 25 25 C 1.50613 * 121.26891 * 0.61454 * 23 22 20 26 26 H 1.08998 * 109.47428 * 184.12481 * 1 2 3 27 27 H 1.09006 * 109.47173 * 304.12803 * 1 2 3 28 28 H 1.09005 * 109.46690 * 64.12449 * 1 2 3 29 29 H 1.08999 * 109.47329 * 239.99351 * 2 1 3 30 30 H 1.09007 * 109.46303 * 119.99589 * 2 1 3 31 31 H 0.96998 * 120.00261 * 4.64454 * 8 7 5 32 32 H 1.09000 * 109.46591 * 294.08557 * 14 13 3 33 33 H 1.09006 * 109.46368 * 54.05795 * 14 13 3 34 34 H 1.09008 * 109.50591 * 299.04229 * 15 14 13 35 35 H 1.09001 * 109.53621 * 178.95067 * 15 14 13 36 36 H 1.09000 * 109.50332 * 297.46651 * 17 16 15 37 37 H 1.08998 * 109.50196 * 177.35216 * 17 16 15 38 38 H 1.08999 * 109.46214 * 305.93506 * 18 13 3 39 39 H 1.08999 * 109.46092 * 65.90711 * 18 13 3 40 40 H 1.08997 * 109.52113 * 184.44724 * 19 16 15 41 41 H 1.09002 * 109.51727 * 304.62321 * 19 16 15 42 42 H 0.97002 * 118.67454 * 179.36832 * 22 20 19 43 43 H 1.09002 * 109.51896 * 211.15830 * 25 23 22 44 44 H 1.08999 * 109.52016 * 90.97416 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4427 -0.0402 5 6 1.5836 2.1368 1.2573 6 1 0.9035 2.9734 1.1956 7 6 2.0343 1.7038 2.4863 8 7 2.9811 0.7938 2.5562 9 14 1.3000 2.4098 4.0520 10 1 0.1352 1.5875 4.4672 11 1 2.3233 2.3974 5.1282 12 1 0.8577 3.8059 3.8057 13 7 1.5068 2.1504 -1.1714 14 6 1.8936 1.4742 -2.4162 15 6 1.2012 2.1506 -3.6018 16 6 1.6056 3.6251 -3.6488 17 6 1.2405 4.2957 -2.3235 18 6 1.9316 3.5560 -1.1754 19 6 3.1144 3.7368 -3.8831 20 6 3.4473 3.1773 -5.2412 21 8 4.5389 2.6853 -5.4302 22 7 2.5589 3.2130 -6.2456 23 6 1.3293 3.7308 -6.1062 24 8 0.5701 3.7225 -7.0513 25 6 0.8740 4.3227 -4.7983 26 1 -0.3634 -1.0250 0.0739 27 1 -0.3634 0.5766 0.8507 28 1 -0.3633 0.4485 -0.9247 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.4095 0.4763 1.7459 32 1 2.9744 1.5367 -2.5428 33 1 1.5935 0.4273 -2.3692 34 1 0.1202 2.0733 -3.4844 35 1 1.5025 1.6609 -4.5278 36 1 0.1603 4.2586 -2.1823 37 1 1.5707 5.3344 -2.3382 38 1 1.6591 4.0205 -0.2277 39 1 3.0123 3.6084 -1.3079 40 1 3.4134 4.7840 -3.8377 41 1 3.6448 3.1721 -3.1164 42 1 2.8161 2.8502 -7.1077 43 1 -0.2006 4.1775 -4.6873 44 1 1.1021 5.3884 -4.7817 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:19 Heat of formation + Delta-G solvation = -102.390455 kcal Electronic energy + Delta-G solvation = -25476.811683 eV Core-core repulsion = 22006.478350 eV Total energy + Delta-G solvation = -3470.333333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90561 -40.30182 -39.93447 -37.72895 -35.86860 -34.50156 -32.94580 -31.75570 -29.99576 -29.77287 -27.35961 -25.62694 -24.37024 -24.00362 -23.58980 -21.30869 -20.91998 -19.53288 -18.68431 -18.57079 -18.07200 -17.30199 -16.95434 -16.07061 -15.84289 -15.70724 -15.65430 -15.43962 -15.38388 -15.25319 -14.82159 -14.31540 -14.17220 -13.76971 -13.35594 -13.32910 -12.92527 -12.78096 -12.70775 -12.59548 -12.25047 -12.07882 -12.03230 -11.91082 -11.89646 -11.69697 -11.55450 -11.38730 -11.26633 -11.14316 -10.97190 -10.42584 -10.33529 -8.89383 -8.47243 -6.17659 0.42257 1.58955 1.65595 1.70466 1.78004 1.81974 2.63062 2.97527 3.20149 3.30540 3.43268 3.48898 3.55899 3.85556 4.09357 4.27859 4.30458 4.41103 4.45773 4.52382 4.55058 4.64079 4.66164 4.69291 4.72308 4.84562 4.89500 4.99686 5.01778 5.07722 5.10382 5.19775 5.22941 5.30600 5.38672 5.48235 5.56473 5.72192 5.77592 6.03935 6.17767 6.29299 6.57821 6.62225 6.76126 6.83244 7.59503 8.88033 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.004276 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.837104 B = 6546.555375 C = 6601.462436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C 0.210 3.790 4 H -0.054 1.054 5 C -0.570 4.570 6 H 0.057 0.943 7 C -0.028 4.028 8 N -0.942 5.942 9 Si 1.108 2.892 10 H -0.280 1.280 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.518 5.518 14 C 0.049 3.951 15 C -0.104 4.104 16 C -0.049 4.049 17 C -0.088 4.088 18 C 0.057 3.943 19 C -0.138 4.138 20 C 0.539 3.461 21 O -0.545 6.545 22 N -0.672 5.672 23 C 0.536 3.464 24 O -0.538 6.538 25 C -0.122 4.122 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.255 0.745 32 H 0.009 0.991 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.012 0.988 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.412 0.588 43 H 0.130 0.870 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 9.437 -14.118 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C 0.102 3.898 4 H -0.037 1.037 5 C -0.609 4.609 6 H 0.075 0.925 7 C -0.226 4.226 8 N -0.580 5.580 9 Si 0.931 3.069 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.192 1.192 13 N -0.242 5.242 14 C -0.079 4.079 15 C -0.142 4.142 16 C -0.050 4.050 17 C -0.125 4.125 18 C -0.071 4.071 19 C -0.177 4.177 20 C 0.330 3.670 21 O -0.421 6.421 22 N -0.336 5.336 23 C 0.328 3.672 24 O -0.413 6.413 25 C -0.161 4.161 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.163 0.837 41 H 0.112 0.888 42 H 0.251 0.749 43 H 0.149 0.851 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.368 9.153 -12.827 16.647 hybrid contribution 1.734 -0.868 -1.865 2.691 sum -3.635 8.285 -14.692 17.254 Atomic orbital electron populations 1.21306 0.94438 0.98922 1.01795 1.21525 0.97887 0.97582 0.97997 1.19157 0.89423 0.91660 0.89533 1.03707 1.22051 1.29352 1.17594 0.91853 0.92529 1.26921 0.95322 0.95409 1.04970 1.70871 1.24610 1.30766 1.31776 0.83043 0.75308 0.76199 0.72306 1.20568 1.22042 1.19176 1.61911 1.59375 1.02175 1.00748 1.22134 0.96129 0.98783 0.90860 1.21703 1.02268 0.94235 0.96012 1.20593 0.92169 0.95735 0.96467 1.21574 1.02154 0.99080 0.89702 1.22061 0.96072 0.89104 0.99831 1.22207 0.98328 1.05788 0.91380 1.21238 0.82686 0.75947 0.87168 1.90779 1.23887 1.43525 1.83891 1.44883 1.15404 1.57058 1.16246 1.21431 0.79470 0.74784 0.91554 1.90784 1.52876 1.54908 1.42746 1.22104 1.04041 1.03295 0.86689 0.94486 0.93914 0.92047 0.94767 0.94979 0.93493 0.97281 0.91785 0.89319 0.92488 0.89572 0.87935 0.91485 0.96994 0.83716 0.88762 0.74921 0.85143 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 9.52 71.98 0.69 -3.62 16 2 C -0.11 -5.05 4.91 30.59 0.15 -4.90 16 3 C 0.21 9.86 1.39 44.17 0.06 9.92 16 4 H -0.05 -2.96 7.48 -2.39 -0.02 -2.98 16 5 C -0.57 -29.15 6.46 25.60 0.17 -28.99 16 6 H 0.06 2.86 6.73 -2.91 -0.02 2.84 16 7 C -0.03 -1.52 5.20 84.66 0.44 -1.08 16 8 N -0.94 -55.61 12.82 21.45 0.27 -55.33 16 9 Si 1.11 48.32 29.91 68.60 2.05 50.37 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 13 N -0.52 -18.91 3.73 -875.41 -3.27 -22.17 16 14 C 0.05 1.56 4.91 86.33 0.42 1.98 16 15 C -0.10 -2.36 4.52 30.60 0.14 -2.22 16 16 C -0.05 -0.84 0.51 -52.15 -0.03 -0.86 16 17 C -0.09 -1.65 4.89 30.60 0.15 -1.50 16 18 C 0.06 1.80 4.99 86.34 0.43 2.23 16 19 C -0.14 -2.57 4.26 29.85 0.13 -2.44 16 20 C 0.54 11.75 6.84 87.73 0.60 12.35 16 21 O -0.55 -16.42 17.87 -2.85 -0.05 -16.48 16 22 N -0.67 -12.30 4.78 -428.58 -2.05 -14.35 16 23 C 0.54 9.49 6.92 87.73 0.61 10.09 16 24 O -0.54 -13.05 17.88 -2.87 -0.05 -13.10 16 25 C -0.12 -1.45 4.86 29.85 0.14 -1.31 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.88 7.15 -2.38 -0.02 1.86 16 28 H 0.06 2.24 7.65 -2.38 -0.02 2.22 16 29 H 0.03 1.42 6.37 -2.39 -0.02 1.41 16 30 H 0.03 1.65 6.32 -2.38 -0.02 1.64 16 31 H 0.25 15.41 6.22 -92.71 -0.58 14.83 16 32 H 0.01 0.31 6.45 -2.39 -0.02 0.30 16 33 H 0.06 2.16 6.00 -2.38 -0.01 2.14 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.26 6.49 -2.39 -0.02 1.24 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 2.45 6.22 -2.39 -0.01 2.44 16 39 H 0.01 0.39 6.66 -2.39 -0.02 0.38 16 40 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 2.34 5.01 -2.39 -0.01 2.33 16 42 H 0.41 7.13 8.79 -92.71 -0.81 6.32 16 43 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.20 329.02 1.41 -67.80 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.40 Total: 13.61 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.10 Total: -10.34 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -5.04 Total: -91.86 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.10 Total: -29.57 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Total: -69.20 1.41 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.594 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds