Wall clock time and date at job start Tue Mar 31 2020 08:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47117 * 2 1 4 4 C 1.34234 * 117.00519 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99254 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00318 * 179.97438 * 4 3 2 7 7 C 1.47199 * 109.57493 * 300.15966 * 6 4 3 8 8 N 4.98034 * 108.54378 * 333.25709 * 2 1 3 9 9 C 1.53125 * 109.51991 * 180.02562 * 6 4 3 10 10 C 1.53038 * 109.27408 * 182.44412 * 9 6 4 11 11 N 1.46841 * 109.52591 * 59.17643 * 10 9 6 12 12 C 1.46908 * 110.99843 * 174.15746 * 11 10 9 13 13 H 1.08990 * 109.47226 * 309.68521 * 12 11 10 14 14 C 1.50704 * 109.46699 * 69.68283 * 12 11 10 15 15 H 1.08001 * 120.00116 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99543 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99878 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 120.00461 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47320 * 269.99972 * 18 16 14 20 20 H 1.48508 * 109.46758 * 30.00005 * 18 16 14 21 21 H 1.48497 * 109.47051 * 149.99515 * 18 16 14 22 22 C 1.53005 * 109.46785 * 189.67987 * 12 11 10 23 23 C 1.52993 * 109.47082 * 63.38683 * 22 12 11 24 24 C 1.46846 * 111.20011 * 298.25532 * 11 10 9 25 25 C 1.53034 * 109.52089 * 61.74465 * 24 11 10 26 26 H 1.08993 * 109.47304 * 300.00221 * 1 2 3 27 27 H 1.08997 * 109.47002 * 60.00457 * 1 2 3 28 28 H 1.09002 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47624 * 239.99664 * 2 1 3 30 30 H 1.08999 * 109.47426 * 119.99851 * 2 1 3 31 31 H 1.08995 * 109.50287 * 62.50014 * 9 6 4 32 32 H 1.09007 * 109.49991 * 302.38051 * 9 6 4 33 33 H 1.09000 * 109.45819 * 299.15655 * 10 9 6 34 34 H 1.09002 * 109.45171 * 179.18775 * 10 9 6 35 35 H 0.96995 * 120.00180 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.46608 * 183.38791 * 22 12 11 37 37 H 1.09000 * 109.47049 * 303.38537 * 22 12 11 38 38 H 1.09009 * 109.47323 * 59.99745 * 23 22 12 39 39 H 1.08998 * 109.47391 * 179.97438 * 23 22 12 40 40 H 1.08999 * 109.47656 * 300.00094 * 23 22 12 41 41 H 1.09001 * 109.46153 * 181.75560 * 24 11 10 42 42 H 1.09000 * 109.46356 * 301.72986 * 24 11 10 43 43 H 1.09000 * 109.50832 * 180.88301 * 25 24 11 44 44 H 1.09006 * 109.50824 * 60.76138 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.4658 3.6589 -1.1998 8 7 3.1139 4.2167 -2.1247 9 6 5.4499 2.8587 0.0001 10 6 6.0286 4.2742 0.0612 11 7 5.5551 4.9460 1.2780 12 6 6.1996 6.2560 1.4408 13 1 7.2792 6.1448 1.3402 14 6 5.6912 7.2009 0.3826 15 1 4.9625 6.8621 -0.3389 16 6 6.1563 8.4980 0.3357 17 7 5.7130 9.3225 -0.5880 18 14 7.4172 9.0839 1.5833 19 1 6.7183 9.6406 2.7694 20 1 8.2680 7.9408 2.0013 21 1 8.2676 10.1360 0.9708 22 6 5.8715 6.8171 2.8259 23 6 6.4610 5.9010 3.9001 24 6 4.0923 5.0755 1.2780 25 6 3.4558 3.6841 1.2534 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.7889 2.3659 -0.9110 32 1 5.7849 2.2908 0.8682 33 1 5.7044 4.8371 -0.8141 34 1 7.1172 4.2209 0.0760 35 1 6.0405 10.2349 -0.6213 36 1 6.2994 7.8148 2.9244 37 1 4.7898 6.8719 2.9488 38 1 7.5428 5.8461 3.7772 39 1 6.2277 6.3009 4.8868 40 1 6.0332 4.9033 3.8016 41 1 3.7746 5.6043 2.1767 42 1 3.7772 5.6347 0.3971 43 1 2.3702 3.7807 1.2377 44 1 3.7594 3.1291 2.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:32 Heat of formation + Delta-G solvation = -53.669027 kcal Electronic energy + Delta-G solvation = -24944.104365 eV Core-core repulsion = 21475.883751 eV Total energy + Delta-G solvation = -3468.220614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11010 -39.03097 -36.91525 -36.40675 -34.68131 -32.31869 -31.96981 -31.33749 -30.56301 -27.57015 -25.45468 -23.52127 -22.98452 -22.54437 -21.62475 -21.09217 -19.49377 -18.19841 -17.15787 -16.92919 -16.53190 -16.09150 -15.09702 -14.67875 -14.38829 -14.29378 -14.14409 -13.87207 -13.57676 -13.16561 -13.04582 -12.82587 -12.58457 -12.56769 -12.27699 -12.14466 -11.99334 -11.92574 -11.81028 -11.60946 -11.46727 -11.23229 -10.93368 -10.90245 -10.75833 -10.59057 -10.44324 -10.17793 -10.01347 -9.63325 -9.58044 -9.25429 -8.59598 -7.30495 -6.13770 -4.16026 1.86870 2.24121 2.85152 3.03040 3.23516 3.34703 3.36506 3.80800 4.34422 4.40303 4.64854 4.68388 4.70353 4.73564 4.76253 4.99926 5.16101 5.37638 5.45125 5.51130 5.62942 5.68902 5.71542 5.83553 5.87359 5.91780 5.99466 6.01940 6.15743 6.19667 6.26607 6.38122 6.55881 6.63147 6.66856 6.74092 6.87868 7.05334 7.17206 7.46994 7.49024 7.63841 7.96468 8.01076 8.40372 8.87736 9.48426 10.98806 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004372 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.337134 B = 6403.088041 C = 6817.923229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.351 6.351 4 C 0.482 3.518 5 O -0.490 6.490 6 C 0.057 3.943 7 C 0.212 3.788 8 N -0.397 5.397 9 C -0.093 4.093 10 C 0.057 3.943 11 N -0.523 5.523 12 C 0.182 3.818 13 H 0.041 0.959 14 C -0.549 4.549 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.263 1.263 21 H -0.299 1.299 22 C -0.121 4.121 23 C -0.143 4.143 24 C 0.054 3.946 25 C -0.103 4.103 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.264 0.736 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 -16.932 5.808 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.267 6.267 4 C 0.322 3.678 5 O -0.376 6.376 6 C 0.052 3.948 7 C -0.107 4.107 8 N -0.071 5.071 9 C -0.132 4.132 10 C -0.072 4.072 11 N -0.247 5.247 12 C 0.075 3.925 13 H 0.059 0.941 14 C -0.587 4.587 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.188 1.188 21 H -0.227 1.227 22 C -0.159 4.159 23 C -0.201 4.201 24 C -0.074 4.074 25 C -0.142 4.142 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.180 -16.524 4.716 18.262 hybrid contribution 0.527 0.748 0.169 0.930 sum -5.654 -15.776 4.885 17.456 Atomic orbital electron populations 1.21814 0.92488 1.02962 1.03795 1.23093 0.95543 0.79925 1.02775 1.86548 1.23980 1.32645 1.83559 1.23090 0.80883 0.91329 0.72471 1.90680 1.60411 1.42096 1.44368 1.18285 0.98420 0.87385 0.90731 1.28081 0.94089 0.94620 0.93909 1.81227 1.07762 1.07260 1.10863 1.21727 0.87370 0.99631 1.04440 1.21966 1.00157 0.91587 0.93500 1.62382 1.04722 1.22774 1.34805 1.19718 0.94976 0.85321 0.92533 0.94103 1.21599 1.26571 0.96020 1.14523 0.90625 1.24986 0.95849 0.96694 0.95248 1.69923 1.43453 1.06092 1.33763 0.86857 0.81814 0.78561 0.81017 1.20519 1.18807 1.22665 1.21926 1.00516 0.97510 0.95950 1.21731 1.00273 1.00805 0.97258 1.22026 0.89427 0.92977 1.02981 1.21860 1.01124 0.97735 0.93512 0.91232 0.91422 0.90188 0.91149 0.90835 0.90424 0.88382 0.93675 0.90099 0.92624 0.93536 0.92223 0.93960 0.94855 0.91776 0.89650 0.93099 0.89963 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.22 10.06 -39.27 -0.40 -4.62 16 4 C 0.48 6.39 6.53 36.00 0.24 6.63 16 5 O -0.49 -7.07 15.73 -18.75 -0.29 -7.37 16 6 C 0.06 0.80 0.66 -158.32 -0.11 0.69 16 7 C 0.21 3.58 11.51 -20.76 -0.24 3.34 16 8 N -0.40 -7.69 18.54 42.15 0.78 -6.91 16 9 C -0.09 -1.29 4.16 -26.65 -0.11 -1.40 16 10 C 0.06 0.97 4.97 -3.84 -0.02 0.95 16 11 N -0.52 -9.44 3.99 -228.08 -0.91 -10.35 16 12 C 0.18 3.93 1.32 -68.86 -0.09 3.84 16 13 H 0.04 0.93 7.05 -51.93 -0.37 0.57 16 14 C -0.55 -14.44 7.81 -34.44 -0.27 -14.71 16 15 H 0.08 2.22 6.09 -52.49 -0.32 1.90 16 16 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 17 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 18 Si 0.89 21.31 24.40 -169.99 -4.15 17.16 16 19 H -0.28 -6.54 6.84 56.52 0.39 -6.15 16 20 H -0.26 -6.00 6.53 56.52 0.37 -5.63 16 21 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 22 C -0.12 -2.44 4.79 -26.73 -0.13 -2.57 16 23 C -0.14 -2.38 9.79 37.15 0.36 -2.02 16 24 C 0.05 0.93 4.58 -3.84 -0.02 0.91 16 25 C -0.10 -1.37 4.79 -26.65 -0.13 -1.50 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.25 8.04 -51.93 -0.42 0.83 16 33 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16 34 H 0.08 1.33 8.02 -51.93 -0.42 0.92 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.05 1.02 3.22 -51.93 -0.17 0.85 16 37 H 0.06 1.17 6.27 -51.93 -0.33 0.85 16 38 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 41 H 0.09 1.43 6.14 -51.93 -0.32 1.12 16 42 H 0.05 1.05 5.56 -51.93 -0.29 0.76 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -31.00 344.23 -5.76 -36.76 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.76 Total: 0.01 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.01 Total: -3.70 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.65 Total: -43.43 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.69 Total: -11.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.00 -5.76 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.905 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds