Wall clock time and date at job start Tue Mar 31 2020 08:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47117 * 2 1 4 4 C 1.34234 * 117.00519 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99254 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00318 * 179.97438 * 4 3 2 7 7 C 1.47199 * 109.57493 * 300.15966 * 6 4 3 8 8 N 4.98034 * 108.54378 * 333.25709 * 2 1 3 9 9 C 1.53125 * 109.51991 * 180.02562 * 6 4 3 10 10 C 1.53038 * 109.27408 * 182.44412 * 9 6 4 11 11 N 1.46841 * 109.52591 * 59.17643 * 10 9 6 12 12 C 1.46908 * 110.99843 * 174.15746 * 11 10 9 13 13 H 1.08990 * 109.47226 * 309.68521 * 12 11 10 14 14 C 1.50704 * 109.46699 * 69.68283 * 12 11 10 15 15 H 1.08001 * 120.00116 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99543 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99878 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 120.00461 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47320 * 269.99972 * 18 16 14 20 20 H 1.48508 * 109.46758 * 30.00005 * 18 16 14 21 21 H 1.48497 * 109.47051 * 149.99515 * 18 16 14 22 22 C 1.53005 * 109.46785 * 189.67987 * 12 11 10 23 23 C 1.52993 * 109.47082 * 63.38683 * 22 12 11 24 24 C 1.46846 * 111.20011 * 298.25532 * 11 10 9 25 25 C 1.53034 * 109.52089 * 61.74465 * 24 11 10 26 26 H 1.08993 * 109.47304 * 300.00221 * 1 2 3 27 27 H 1.08997 * 109.47002 * 60.00457 * 1 2 3 28 28 H 1.09002 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47624 * 239.99664 * 2 1 3 30 30 H 1.08999 * 109.47426 * 119.99851 * 2 1 3 31 31 H 1.08995 * 109.50287 * 62.50014 * 9 6 4 32 32 H 1.09007 * 109.49991 * 302.38051 * 9 6 4 33 33 H 1.09000 * 109.45819 * 299.15655 * 10 9 6 34 34 H 1.09002 * 109.45171 * 179.18775 * 10 9 6 35 35 H 0.96995 * 120.00180 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.46608 * 183.38791 * 22 12 11 37 37 H 1.09000 * 109.47049 * 303.38537 * 22 12 11 38 38 H 1.09009 * 109.47323 * 59.99745 * 23 22 12 39 39 H 1.08998 * 109.47391 * 179.97438 * 23 22 12 40 40 H 1.08999 * 109.47656 * 300.00094 * 23 22 12 41 41 H 1.09001 * 109.46153 * 181.75560 * 24 11 10 42 42 H 1.09000 * 109.46356 * 301.72986 * 24 11 10 43 43 H 1.09000 * 109.50832 * 180.88301 * 25 24 11 44 44 H 1.09006 * 109.50824 * 60.76138 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.4658 3.6589 -1.1998 8 7 3.1139 4.2167 -2.1247 9 6 5.4499 2.8587 0.0001 10 6 6.0286 4.2742 0.0612 11 7 5.5551 4.9460 1.2780 12 6 6.1996 6.2560 1.4408 13 1 7.2792 6.1448 1.3402 14 6 5.6912 7.2009 0.3826 15 1 4.9625 6.8621 -0.3389 16 6 6.1563 8.4980 0.3357 17 7 5.7130 9.3225 -0.5880 18 14 7.4172 9.0839 1.5833 19 1 6.7183 9.6406 2.7694 20 1 8.2680 7.9408 2.0013 21 1 8.2676 10.1360 0.9708 22 6 5.8715 6.8171 2.8259 23 6 6.4610 5.9010 3.9001 24 6 4.0923 5.0755 1.2780 25 6 3.4558 3.6841 1.2534 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.7889 2.3659 -0.9110 32 1 5.7849 2.2908 0.8682 33 1 5.7044 4.8371 -0.8141 34 1 7.1172 4.2209 0.0760 35 1 6.0405 10.2349 -0.6213 36 1 6.2994 7.8148 2.9244 37 1 4.7898 6.8719 2.9488 38 1 7.5428 5.8461 3.7772 39 1 6.2277 6.3009 4.8868 40 1 6.0332 4.9033 3.8016 41 1 3.7746 5.6043 2.1767 42 1 3.7772 5.6347 0.3971 43 1 2.3702 3.7807 1.2377 44 1 3.7594 3.1291 2.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:31 Heat of formation + Delta-G solvation = -73.985794 kcal Electronic energy + Delta-G solvation = -24944.985366 eV Core-core repulsion = 21475.883751 eV Total energy + Delta-G solvation = -3469.101615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19805 -40.32572 -38.10424 -37.72738 -36.16263 -34.19037 -33.18160 -32.34695 -31.85423 -29.24361 -26.89776 -24.63455 -24.13772 -24.04518 -22.67166 -22.42330 -21.16071 -19.39299 -18.75316 -18.02553 -17.74690 -17.44305 -16.65908 -16.10640 -15.94594 -15.62048 -15.21563 -15.05082 -14.94931 -14.59819 -14.41101 -14.08676 -13.97990 -13.75534 -13.62813 -13.47712 -13.35325 -13.06578 -12.96347 -12.89749 -12.66243 -12.48827 -12.45768 -12.21776 -11.98058 -11.97459 -11.77671 -11.52710 -11.42710 -11.33611 -11.15979 -11.05062 -10.65748 -8.96159 -8.30155 -6.35290 0.78703 1.19502 1.31663 1.37021 1.47393 1.48691 1.78805 2.31726 2.57291 3.05864 3.19134 3.38384 3.52682 3.61402 4.05618 4.08734 4.16942 4.33654 4.38990 4.43227 4.47868 4.52212 4.60609 4.69308 4.75116 4.78489 4.82090 4.95478 4.95989 4.99150 5.11359 5.12132 5.19907 5.22480 5.28256 5.36554 5.38165 5.54088 5.56245 5.70802 6.13779 6.25366 6.35594 6.46588 6.50989 6.74825 7.33477 8.86653 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004372 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.337134 B = 6403.088041 C = 6817.923229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.494 3.506 5 O -0.498 6.498 6 C 0.055 3.945 7 C 0.230 3.770 8 N -0.453 5.453 9 C -0.083 4.083 10 C 0.056 3.944 11 N -0.504 5.504 12 C 0.184 3.816 13 H 0.037 0.963 14 C -0.536 4.536 15 H 0.029 0.971 16 C 0.012 3.988 17 N -0.953 5.953 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.239 1.239 21 H -0.308 1.308 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.055 3.945 25 C -0.093 4.093 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.002 0.998 34 H 0.089 0.911 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.004 0.996 43 H 0.098 0.902 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -19.729 8.997 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.334 3.666 5 O -0.385 6.385 6 C 0.050 3.950 7 C -0.088 4.088 8 N -0.128 5.128 9 C -0.121 4.121 10 C -0.073 4.073 11 N -0.227 5.227 12 C 0.076 3.924 13 H 0.055 0.945 14 C -0.575 4.575 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.593 5.593 18 Si 0.778 3.222 19 H -0.192 1.192 20 H -0.162 1.162 21 H -0.236 1.236 22 C -0.159 4.159 23 C -0.191 4.191 24 C -0.073 4.073 25 C -0.131 4.131 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.020 0.980 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.023 0.977 43 H 0.116 0.884 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.799 -19.363 7.922 21.710 hybrid contribution 0.297 1.548 -0.916 1.823 sum -5.502 -17.815 7.006 19.918 Atomic orbital electron populations 1.21852 0.90787 1.04496 1.03531 1.23444 0.96892 0.78361 1.03451 1.86541 1.22990 1.34740 1.83070 1.22592 0.81362 0.90272 0.72374 1.90684 1.60761 1.42067 1.44977 1.18473 0.98690 0.88181 0.89630 1.28727 0.92677 0.93522 0.93852 1.81225 1.09677 1.09035 1.12834 1.21672 0.86979 0.97309 1.06154 1.22006 1.00871 0.93050 0.91356 1.62446 1.05109 1.20360 1.34778 1.19625 0.94704 0.85921 0.92195 0.94499 1.21915 1.24510 0.96725 1.14393 0.95298 1.25888 0.98262 0.97040 0.97326 1.70103 1.46024 1.06589 1.36621 0.85821 0.79344 0.78436 0.78580 1.19249 1.16200 1.23628 1.21843 1.00797 0.97451 0.95825 1.21649 1.00157 1.00588 0.96714 1.22026 0.88892 0.95314 1.01068 1.21850 1.01804 0.95219 0.94264 0.90895 0.92274 0.87741 0.91152 0.89513 0.89596 0.85655 0.98012 0.89300 0.92865 0.95140 0.92262 0.93723 0.92700 0.90301 0.89109 0.97731 0.88365 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.36 -7.76 10.06 -51.45 -0.52 -8.28 16 4 C 0.49 11.83 6.53 71.24 0.47 12.29 16 5 O -0.50 -12.85 15.73 21.96 0.35 -12.50 16 6 C 0.06 1.46 0.66 -54.65 -0.04 1.42 16 7 C 0.23 7.94 11.51 89.44 1.03 8.97 16 8 N -0.45 -18.50 18.54 20.01 0.37 -18.13 16 9 C -0.08 -2.13 4.16 30.65 0.13 -2.00 16 10 C 0.06 1.90 4.97 86.33 0.43 2.33 16 11 N -0.50 -17.60 3.99 -875.51 -3.49 -21.09 16 12 C 0.18 7.84 1.32 44.17 0.06 7.90 16 13 H 0.04 1.63 7.05 -2.39 -0.02 1.61 16 14 C -0.54 -29.39 7.81 25.60 0.20 -29.19 16 15 H 0.03 1.82 6.09 -2.91 -0.02 1.81 16 16 C 0.01 0.70 5.45 84.65 0.46 1.16 16 17 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 18 Si 0.95 44.34 24.40 68.60 1.67 46.02 16 19 H -0.27 -11.82 6.84 99.48 0.68 -11.14 16 20 H -0.24 -10.06 6.53 99.48 0.65 -9.41 16 21 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 22 C -0.12 -4.61 4.79 30.59 0.15 -4.47 16 23 C -0.13 -3.87 9.79 71.98 0.70 -3.17 16 24 C 0.06 1.87 4.58 86.32 0.39 2.26 16 25 C -0.09 -2.23 4.79 30.65 0.15 -2.08 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.09 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.13 2.67 8.04 -2.38 -0.02 2.65 16 33 H 0.00 0.07 6.44 -2.39 -0.02 0.05 16 34 H 0.09 2.85 8.02 -2.39 -0.02 2.83 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.03 1.26 3.22 -2.39 -0.01 1.25 16 37 H 0.06 2.23 6.27 -2.39 -0.01 2.21 16 38 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.05 7.70 -2.39 -0.02 2.03 16 41 H 0.09 2.94 6.14 -2.39 -0.01 2.93 16 42 H 0.00 0.19 5.56 -2.39 -0.01 0.18 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -71.90 344.23 4.91 -67.00 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.91 Total: 11.29 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.31 Total: -4.23 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -2.82 Total: -99.30 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.17 Total: -20.78 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.02 kcal Total: -71.90 4.91 -67.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.990 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds