Wall clock time and date at job start Tue Mar 31 2020 08:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46895 * 2 1 4 4 C 1.34230 * 116.99408 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99628 * 179.97438 * 4 3 2 7 7 C 1.47192 * 109.57544 * 300.15737 * 6 4 3 8 8 N 4.98027 * 108.54538 * 333.25515 * 2 1 3 9 9 C 1.53119 * 109.52004 * 179.97438 * 6 4 3 10 10 C 1.53039 * 109.27501 * 182.44164 * 9 6 4 11 11 N 1.46837 * 109.51617 * 59.18684 * 10 9 6 12 12 C 1.46897 * 111.00247 * 174.15339 * 11 10 9 13 13 H 1.08996 * 109.47559 * 178.85638 * 12 11 10 14 14 C 1.50708 * 109.47156 * 58.86148 * 12 11 10 15 15 H 1.08002 * 119.99512 * 359.97438 * 14 12 11 16 16 C 1.37875 * 120.00335 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99769 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 120.00255 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47257 * 59.99765 * 18 16 14 20 20 H 1.48495 * 109.47494 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47099 * 299.99975 * 18 16 14 22 22 C 1.53002 * 109.47399 * 298.86303 * 12 11 10 23 23 C 1.52999 * 109.46712 * 296.54956 * 22 12 11 24 24 C 1.46845 * 111.19891 * 298.24190 * 11 10 9 25 25 C 1.53033 * 109.51517 * 61.75711 * 24 11 10 26 26 H 1.09006 * 109.46829 * 60.00480 * 1 2 3 27 27 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47491 * 300.00788 * 1 2 3 29 29 H 1.08991 * 109.47131 * 239.99580 * 2 1 3 30 30 H 1.09006 * 109.46829 * 119.99520 * 2 1 3 31 31 H 1.09001 * 109.50518 * 62.50258 * 9 6 4 32 32 H 1.08999 * 109.53840 * 302.40360 * 9 6 4 33 33 H 1.09002 * 109.46073 * 179.19752 * 10 9 6 34 34 H 1.09003 * 109.46237 * 299.17544 * 10 9 6 35 35 H 0.96999 * 120.00046 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.47292 * 56.54775 * 22 12 11 37 37 H 1.08996 * 109.47369 * 176.55331 * 22 12 11 38 38 H 1.09004 * 109.47085 * 65.06748 * 23 22 12 39 39 H 1.09003 * 109.47154 * 185.06267 * 23 22 12 40 40 H 1.09001 * 109.47550 * 305.06799 * 23 22 12 41 41 H 1.09008 * 109.47155 * 301.73999 * 24 11 10 42 42 H 1.09002 * 109.45630 * 181.76887 * 24 11 10 43 43 H 1.09003 * 109.50260 * 180.87596 * 25 24 11 44 44 H 1.08995 * 109.50354 * 60.76117 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.4660 3.6587 -1.1998 8 7 3.1140 4.2165 -2.1248 9 6 5.4499 2.8586 0.0014 10 6 6.0287 4.2740 0.0624 11 7 5.5542 4.9460 1.2787 12 6 6.1986 6.2560 1.4419 13 1 5.8143 6.7407 2.3393 14 6 5.9009 7.1155 0.2403 15 1 5.2941 6.7271 -0.5644 16 6 6.4040 8.3971 0.1676 17 7 7.1434 8.8697 1.1472 18 14 6.0357 9.4620 -1.3221 19 1 4.5675 9.6453 -1.4487 20 1 6.6869 10.7863 -1.1572 21 1 6.5592 8.8013 -2.5446 22 6 7.7114 6.0677 1.5720 23 6 8.0185 5.2676 2.8395 24 6 4.0915 5.0757 1.2775 25 6 3.4549 3.6843 1.2529 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.7898 2.3654 -0.9093 32 1 5.7849 2.2908 0.8694 33 1 7.1173 4.2209 0.0779 34 1 5.7050 4.8368 -0.8132 35 1 7.4977 9.7712 1.0959 36 1 8.0865 5.5284 0.7022 37 1 8.1951 7.0426 1.6316 38 1 7.6110 4.2614 2.7417 39 1 9.0979 5.2104 2.9804 40 1 7.5655 5.7611 3.6994 41 1 3.7770 5.6348 0.3961 42 1 3.7732 5.6050 2.1757 43 1 2.3693 3.7811 1.2363 44 1 3.7578 3.1298 2.1409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:35 Heat of formation + Delta-G solvation = -61.880678 kcal Electronic energy + Delta-G solvation = -24900.643529 eV Core-core repulsion = 21432.066831 eV Total energy + Delta-G solvation = -3468.576698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09700 -38.95540 -36.86614 -36.34930 -34.58820 -32.33280 -31.81136 -31.06711 -30.39831 -27.17636 -25.24475 -23.56646 -23.03211 -22.56929 -21.61724 -20.90276 -19.23022 -18.17243 -17.02363 -16.92452 -16.48307 -15.69234 -15.04875 -14.64292 -14.30709 -14.20072 -14.06294 -13.84765 -13.42312 -13.20705 -13.05619 -12.85587 -12.47584 -12.41344 -12.16959 -12.11525 -11.90449 -11.77089 -11.61509 -11.39240 -11.17481 -10.99629 -10.83110 -10.79106 -10.75816 -10.59420 -10.41319 -10.24454 -9.85943 -9.70671 -9.39598 -9.12891 -8.38441 -7.24339 -6.02165 -4.15314 1.87319 2.23659 2.80616 2.98994 3.27930 3.32528 3.37392 3.79345 4.38252 4.42003 4.65435 4.68866 4.71867 4.76861 4.90193 4.99676 5.22472 5.37712 5.49732 5.50449 5.67155 5.70740 5.75127 5.86828 5.95833 6.00807 6.17498 6.25183 6.38686 6.42948 6.49849 6.61189 6.66193 6.68819 7.06980 7.16096 7.27797 7.46720 7.56375 7.59655 7.72837 7.88775 8.09790 8.22877 8.39815 8.93387 9.52992 10.97201 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.004562 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.050809 B = 6136.436167 C = 6903.400679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.351 6.351 4 C 0.481 3.519 5 O -0.489 6.489 6 C 0.056 3.944 7 C 0.218 3.782 8 N -0.405 5.405 9 C -0.095 4.095 10 C 0.055 3.945 11 N -0.531 5.531 12 C 0.216 3.784 13 H 0.042 0.958 14 C -0.546 4.546 15 H 0.054 0.946 16 C 0.072 3.928 17 N -0.884 5.884 18 Si 0.883 3.117 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.278 1.278 22 C -0.113 4.113 23 C -0.137 4.137 24 C 0.060 3.940 25 C -0.103 4.103 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 -15.407 1.778 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.268 6.268 4 C 0.322 3.678 5 O -0.374 6.374 6 C 0.051 3.949 7 C -0.101 4.101 8 N -0.079 5.079 9 C -0.134 4.134 10 C -0.073 4.073 11 N -0.255 5.255 12 C 0.110 3.890 13 H 0.060 0.940 14 C -0.585 4.585 15 H 0.072 0.928 16 C -0.131 4.131 17 N -0.522 5.522 18 Si 0.711 3.289 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.151 4.151 23 C -0.195 4.195 24 C -0.069 4.069 25 C -0.141 4.141 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.422 -15.001 0.837 17.223 hybrid contribution -0.286 0.849 -1.295 1.575 sum -8.708 -14.151 -0.458 16.622 Atomic orbital electron populations 1.21815 0.92507 1.02962 1.03756 1.23092 0.95521 0.79950 1.02793 1.86546 1.24018 1.32637 1.83610 1.23109 0.80857 0.91369 0.72514 1.90681 1.60389 1.42089 1.44270 1.18324 0.98623 0.87332 0.90615 1.28128 0.93758 0.94410 0.93819 1.81196 1.08116 1.07708 1.10909 1.21775 0.87124 1.00172 1.04293 1.22020 1.00812 0.90994 0.93518 1.62496 1.03811 1.24479 1.34704 1.19288 0.90871 0.82581 0.96284 0.93999 1.21671 1.32511 0.98831 1.05478 0.92814 1.24854 0.94732 0.97677 0.95811 1.69852 1.33998 1.16847 1.31491 0.86792 0.78625 0.79811 0.83637 1.20364 1.21166 1.20340 1.21639 0.98457 1.00814 0.94235 1.21702 0.98057 1.00294 0.99402 1.21903 0.90084 0.92874 1.02062 1.21845 1.00911 0.97805 0.93588 0.91469 0.90186 0.91230 0.91164 0.90806 0.90669 0.88431 0.89467 0.94172 0.92794 0.94736 0.88916 0.93429 0.95616 0.94104 0.94103 0.90171 0.90112 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.24 10.06 -39.26 -0.39 -4.64 16 4 C 0.48 6.47 6.53 36.01 0.24 6.71 16 5 O -0.49 -7.20 15.73 -18.75 -0.29 -7.49 16 6 C 0.06 0.80 0.66 -158.32 -0.11 0.69 16 7 C 0.22 3.62 11.51 -20.76 -0.24 3.38 16 8 N -0.40 -7.60 18.54 42.16 0.78 -6.81 16 9 C -0.09 -1.38 4.16 -26.65 -0.11 -1.49 16 10 C 0.06 0.98 4.59 -3.84 -0.02 0.97 16 11 N -0.53 -10.01 4.12 -228.08 -0.94 -10.95 16 12 C 0.22 4.94 1.76 -68.86 -0.12 4.82 16 13 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 14 C -0.55 -14.08 7.19 -34.44 -0.25 -14.33 16 15 H 0.05 1.43 5.84 -52.49 -0.31 1.13 16 16 C 0.07 1.92 5.30 -17.82 -0.09 1.83 16 17 N -0.88 -24.17 11.30 55.43 0.63 -23.54 16 18 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.11 -2.51 5.02 -26.73 -0.13 -2.64 16 23 C -0.14 -2.59 9.72 37.16 0.36 -2.22 16 24 C 0.06 1.03 4.91 -3.84 -0.02 1.01 16 25 C -0.10 -1.37 4.79 -26.65 -0.13 -1.50 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.33 8.04 -51.93 -0.42 0.92 16 33 H 0.09 1.58 5.97 -51.93 -0.31 1.27 16 34 H 0.04 0.82 5.78 -51.93 -0.30 0.52 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.03 0.75 6.13 -51.93 -0.32 0.43 16 37 H 0.09 2.35 5.98 -51.93 -0.31 2.03 16 38 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.81 6.16 -51.92 -0.32 0.49 16 42 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -28.75 350.85 -6.85 -35.60 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.89 Total: -1.04 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.01 Total: -2.65 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.47 Total: -41.31 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.69 Total: -12.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.75 -6.85 -35.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds