Wall clock time and date at job start Tue Mar 31 2020 08:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46895 * 2 1 4 4 C 1.34230 * 116.99408 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99628 * 179.97438 * 4 3 2 7 7 C 1.47192 * 109.57544 * 300.15737 * 6 4 3 8 8 N 4.98027 * 108.54538 * 333.25515 * 2 1 3 9 9 C 1.53119 * 109.52004 * 179.97438 * 6 4 3 10 10 C 1.53039 * 109.27501 * 182.44164 * 9 6 4 11 11 N 1.46837 * 109.51617 * 59.18684 * 10 9 6 12 12 C 1.46897 * 111.00247 * 174.15339 * 11 10 9 13 13 H 1.08996 * 109.47559 * 178.85638 * 12 11 10 14 14 C 1.50708 * 109.47156 * 58.86148 * 12 11 10 15 15 H 1.08002 * 119.99512 * 359.97438 * 14 12 11 16 16 C 1.37875 * 120.00335 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99769 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 120.00255 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47257 * 59.99765 * 18 16 14 20 20 H 1.48495 * 109.47494 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47099 * 299.99975 * 18 16 14 22 22 C 1.53002 * 109.47399 * 298.86303 * 12 11 10 23 23 C 1.52999 * 109.46712 * 296.54956 * 22 12 11 24 24 C 1.46845 * 111.19891 * 298.24190 * 11 10 9 25 25 C 1.53033 * 109.51517 * 61.75711 * 24 11 10 26 26 H 1.09006 * 109.46829 * 60.00480 * 1 2 3 27 27 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47491 * 300.00788 * 1 2 3 29 29 H 1.08991 * 109.47131 * 239.99580 * 2 1 3 30 30 H 1.09006 * 109.46829 * 119.99520 * 2 1 3 31 31 H 1.09001 * 109.50518 * 62.50258 * 9 6 4 32 32 H 1.08999 * 109.53840 * 302.40360 * 9 6 4 33 33 H 1.09002 * 109.46073 * 179.19752 * 10 9 6 34 34 H 1.09003 * 109.46237 * 299.17544 * 10 9 6 35 35 H 0.96999 * 120.00046 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.47292 * 56.54775 * 22 12 11 37 37 H 1.08996 * 109.47369 * 176.55331 * 22 12 11 38 38 H 1.09004 * 109.47085 * 65.06748 * 23 22 12 39 39 H 1.09003 * 109.47154 * 185.06267 * 23 22 12 40 40 H 1.09001 * 109.47550 * 305.06799 * 23 22 12 41 41 H 1.09008 * 109.47155 * 301.73999 * 24 11 10 42 42 H 1.09002 * 109.45630 * 181.76887 * 24 11 10 43 43 H 1.09003 * 109.50260 * 180.87596 * 25 24 11 44 44 H 1.08995 * 109.50354 * 60.76117 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.4660 3.6587 -1.1998 8 7 3.1140 4.2165 -2.1248 9 6 5.4499 2.8586 0.0014 10 6 6.0287 4.2740 0.0624 11 7 5.5542 4.9460 1.2787 12 6 6.1986 6.2560 1.4419 13 1 5.8143 6.7407 2.3393 14 6 5.9009 7.1155 0.2403 15 1 5.2941 6.7271 -0.5644 16 6 6.4040 8.3971 0.1676 17 7 7.1434 8.8697 1.1472 18 14 6.0357 9.4620 -1.3221 19 1 4.5675 9.6453 -1.4487 20 1 6.6869 10.7863 -1.1572 21 1 6.5592 8.8013 -2.5446 22 6 7.7114 6.0677 1.5720 23 6 8.0185 5.2676 2.8395 24 6 4.0915 5.0757 1.2775 25 6 3.4549 3.6843 1.2529 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.7898 2.3654 -0.9093 32 1 5.7849 2.2908 0.8694 33 1 7.1173 4.2209 0.0779 34 1 5.7050 4.8368 -0.8132 35 1 7.4977 9.7712 1.0959 36 1 8.0865 5.5284 0.7022 37 1 8.1951 7.0426 1.6316 38 1 7.6110 4.2614 2.7417 39 1 9.0979 5.2104 2.9804 40 1 7.5655 5.7611 3.6994 41 1 3.7770 5.6348 0.3961 42 1 3.7732 5.6050 2.1757 43 1 2.3693 3.7811 1.2363 44 1 3.7578 3.1298 2.1409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:34 Heat of formation + Delta-G solvation = -77.985368 kcal Electronic energy + Delta-G solvation = -24901.341881 eV Core-core repulsion = 21432.066831 eV Total energy + Delta-G solvation = -3469.275049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18656 -40.25994 -38.01297 -37.71662 -36.10918 -34.05224 -32.84776 -32.40975 -31.72149 -28.85825 -26.78755 -24.67464 -24.48967 -23.82325 -22.67707 -22.26686 -20.93969 -19.37789 -18.48321 -18.00389 -17.66010 -17.21893 -16.72884 -16.06400 -15.74778 -15.45436 -15.23526 -15.11847 -14.88256 -14.62064 -14.32240 -13.93889 -13.80293 -13.67788 -13.51690 -13.26415 -13.22915 -12.99271 -12.92789 -12.90874 -12.63782 -12.51165 -12.43472 -12.28467 -12.12989 -11.83637 -11.78951 -11.52762 -11.51988 -11.35953 -11.03905 -10.91691 -10.41034 -8.95620 -8.04460 -6.24918 0.79298 1.19009 1.31397 1.34309 1.40396 1.48004 1.78371 2.36925 2.57192 3.14195 3.29462 3.42861 3.54502 3.63517 4.05559 4.08890 4.21450 4.37222 4.42820 4.48113 4.58698 4.64595 4.74052 4.80282 4.82331 4.85046 4.95583 4.99222 5.03065 5.07078 5.12154 5.18852 5.26617 5.34137 5.38075 5.53309 5.55145 5.66792 5.85498 6.09884 6.20200 6.24403 6.38158 6.51283 6.65918 6.95985 7.45361 8.89746 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.004562 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.050809 B = 6136.436167 C = 6903.400679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.493 3.507 5 O -0.499 6.499 6 C 0.056 3.944 7 C 0.233 3.767 8 N -0.449 5.449 9 C -0.086 4.086 10 C 0.059 3.941 11 N -0.518 5.518 12 C 0.222 3.778 13 H 0.015 0.985 14 C -0.549 4.549 15 H 0.039 0.961 16 C 0.031 3.969 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.282 1.282 20 H -0.278 1.278 21 H -0.281 1.281 22 C -0.108 4.108 23 C -0.124 4.124 24 C 0.058 3.942 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.008 0.992 35 H 0.262 0.738 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.009 0.991 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -17.717 2.559 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.333 3.667 5 O -0.386 6.386 6 C 0.051 3.949 7 C -0.085 4.085 8 N -0.124 5.124 9 C -0.124 4.124 10 C -0.070 4.070 11 N -0.242 5.242 12 C 0.115 3.885 13 H 0.032 0.968 14 C -0.588 4.588 15 H 0.057 0.943 16 C -0.169 4.169 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.208 1.208 20 H -0.203 1.203 21 H -0.207 1.207 22 C -0.147 4.147 23 C -0.182 4.182 24 C -0.070 4.070 25 C -0.130 4.130 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.167 -17.321 1.615 19.664 hybrid contribution -0.115 1.536 -1.553 2.187 sum -9.282 -15.785 0.062 18.312 Atomic orbital electron populations 1.21851 0.90700 1.04489 1.03570 1.23443 0.96941 0.78403 1.03399 1.86537 1.22922 1.34685 1.83092 1.22635 0.81369 0.90338 0.72358 1.90685 1.60801 1.42155 1.44978 1.18423 0.98522 0.88160 0.89780 1.28618 0.92632 0.93518 0.93741 1.81196 1.09629 1.09155 1.12430 1.21694 0.87183 0.97753 1.05792 1.21983 1.00838 0.92573 0.91565 1.62461 1.04675 1.21985 1.35082 1.19052 0.91746 0.83986 0.93738 0.96755 1.21906 1.31616 0.99327 1.05939 0.94324 1.25401 0.95069 0.98807 0.97667 1.69951 1.34760 1.16992 1.32539 0.86078 0.78069 0.78934 0.81298 1.20759 1.20337 1.20669 1.21475 0.97414 0.99667 0.96122 1.21561 0.99229 1.00308 0.97084 1.21943 0.89121 0.95339 1.00625 1.21814 1.01814 0.95216 0.94146 0.92140 0.87796 0.90909 0.91125 0.89691 0.89686 0.86368 0.89753 0.97391 0.92882 0.94811 0.92212 0.91727 0.93997 0.94612 0.97313 0.90066 0.88069 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 71.98 0.74 -0.84 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -7.65 10.06 -51.41 -0.52 -8.17 16 4 C 0.49 11.89 6.53 71.24 0.47 12.35 16 5 O -0.50 -13.20 15.73 21.97 0.35 -12.85 16 6 C 0.06 1.48 0.66 -54.65 -0.04 1.44 16 7 C 0.23 7.62 11.51 89.44 1.03 8.65 16 8 N -0.45 -17.00 18.54 20.00 0.37 -16.63 16 9 C -0.09 -2.31 4.16 30.65 0.13 -2.18 16 10 C 0.06 2.07 4.59 86.33 0.40 2.47 16 11 N -0.52 -19.27 4.12 -875.52 -3.61 -22.88 16 12 C 0.22 10.32 1.76 44.17 0.08 10.40 16 13 H 0.01 0.75 8.07 -2.39 -0.02 0.74 16 14 C -0.55 -29.08 7.19 25.60 0.18 -28.90 16 15 H 0.04 2.14 5.84 -2.91 -0.02 2.12 16 16 C 0.03 1.70 5.30 84.65 0.45 2.14 16 17 N -0.90 -50.46 11.30 21.45 0.24 -50.22 16 18 Si 0.93 44.46 29.54 68.60 2.03 46.49 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 C -0.11 -4.82 5.02 30.59 0.15 -4.67 16 23 C -0.12 -4.50 9.72 71.98 0.70 -3.80 16 24 C 0.06 1.98 4.91 86.32 0.42 2.41 16 25 C -0.09 -2.22 4.79 30.65 0.15 -2.08 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.08 1.14 8.13 -2.38 -0.02 1.12 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.12 2.79 8.04 -2.39 -0.02 2.78 16 33 H 0.08 3.00 5.97 -2.39 -0.01 2.99 16 34 H 0.01 0.33 5.78 -2.39 -0.01 0.32 16 35 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.03 1.47 6.13 -2.39 -0.01 1.46 16 37 H 0.06 3.08 5.98 -2.39 -0.01 3.06 16 38 H 0.06 2.11 7.85 -2.39 -0.02 2.09 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.01 0.35 6.16 -2.38 -0.01 0.34 16 42 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 43 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -63.22 350.85 5.16 -58.07 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.99 Total: 7.55 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.30 Total: -1.36 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.99 Total: -89.73 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.17 Total: -21.02 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.22 5.16 -58.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.916 kcal (2) G-P(sol) polarization free energy of solvation -63.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds