Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.53003 * 109.47376 * 120.00242 * 2 1 3 5 5 H 1.09000 * 115.55686 * 274.31399 * 4 2 1 6 6 C 1.52992 * 117.50205 * 128.61981 * 4 2 1 7 7 C 1.52998 * 117.50164 * 59.99385 * 4 2 1 8 8 H 1.09006 * 117.51526 * 0.02562 * 7 4 2 9 9 N 1.46494 * 117.50180 * 214.98331 * 7 4 2 10 10 C 1.34779 * 119.99757 * 154.98967 * 9 7 4 11 11 O 1.21345 * 120.00263 * 359.97438 * 10 9 7 12 12 C 1.49457 * 119.99809 * 180.02562 * 10 9 7 13 13 O 1.21340 * 119.99864 * 5.08623 * 12 10 9 14 14 N 1.34773 * 119.99770 * 185.08971 * 12 10 9 15 15 C 1.46499 * 120.00072 * 185.00703 * 14 12 10 16 16 C 1.53000 * 109.47568 * 184.77088 * 15 14 12 17 17 C 1.50699 * 115.55169 * 294.82822 * 16 15 14 18 18 H 1.07996 * 120.00355 * 99.44295 * 17 16 15 19 19 C 1.37874 * 119.99684 * 279.43992 * 17 16 15 20 20 N 1.31523 * 120.00135 * 5.14854 * 19 17 16 21 21 Si 1.86801 * 120.00109 * 185.14981 * 19 17 16 22 22 H 1.48502 * 109.47011 * 270.00159 * 21 19 17 23 23 H 1.48502 * 109.47012 * 29.99917 * 21 19 17 24 24 H 1.48495 * 109.47305 * 149.99978 * 21 19 17 25 25 C 1.53007 * 117.51310 * 80.52608 * 16 15 14 26 26 C 1.53002 * 59.99998 * 107.48119 * 25 16 15 27 27 H 1.08990 * 109.46985 * 60.00109 * 1 2 3 28 28 H 1.09007 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46920 * 299.99851 * 1 2 3 30 30 H 1.09002 * 109.47440 * 240.00197 * 2 1 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47098 * 299.99821 * 3 2 1 33 33 H 1.09003 * 109.47098 * 60.00258 * 3 2 1 34 34 H 1.09008 * 117.49912 * 145.02048 * 6 4 2 35 35 H 1.08998 * 117.51849 * 359.97438 * 6 4 2 36 36 H 0.96995 * 120.00128 * 334.98449 * 9 7 4 37 37 H 0.97002 * 120.00399 * 5.00826 * 14 12 10 38 38 H 1.09007 * 109.46807 * 64.77149 * 15 14 12 39 39 H 1.08994 * 109.47371 * 304.77867 * 15 14 12 40 40 H 0.97000 * 119.99622 * 174.99957 * 20 19 17 41 41 H 1.09002 * 117.49349 * 214.97184 * 25 16 15 42 42 H 1.09000 * 117.49979 * 359.97438 * 25 16 15 43 43 H 1.08996 * 117.49484 * 252.50633 * 26 25 16 44 44 H 1.09002 * 117.49449 * 107.48670 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0066 -2.6350 0.6661 9 7 1.3953 -2.6529 2.8016 10 6 0.5846 -3.7071 3.0205 11 8 0.0534 -4.2686 2.0850 12 6 0.3389 -4.1839 4.4155 13 8 0.7938 -3.5674 5.3563 14 7 -0.3880 -5.2987 4.6283 15 6 -0.7217 -5.7056 5.9955 16 6 -1.4432 -7.0545 5.9645 17 6 -2.7911 -7.0554 5.2907 18 1 -2.8856 -7.4027 4.2725 19 6 -3.9037 -6.6128 5.9742 20 7 -3.7743 -6.0959 7.1766 21 14 -5.5949 -6.7475 5.1925 22 1 -5.8837 -5.5116 4.4215 23 1 -5.6267 -7.9188 4.2802 24 1 -6.6188 -6.9191 6.2543 25 6 -0.5836 -8.3128 5.8267 26 6 -1.2520 -7.9856 7.1635 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.8416 -1.9465 1.8168 35 1 3.3910 -2.0484 0.0313 36 1 1.8196 -2.2040 3.5494 37 1 -0.6901 -5.8317 3.8763 38 1 -1.3710 -4.9567 6.4492 39 1 0.1930 -5.7962 6.5812 40 1 -4.5457 -5.7185 7.6278 41 1 -0.9932 -9.1412 5.2487 42 1 0.4960 -8.1797 5.7577 43 1 -0.6121 -7.6373 7.9742 44 1 -2.1013 -8.5988 7.4649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261410052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = -38.866835 kcal Electronic energy + Delta-G solvation = -23348.841918 eV Core-core repulsion = 19881.263175 eV Total energy + Delta-G solvation = -3467.578743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36568 -38.87793 -37.77281 -36.73339 -34.69611 -33.40707 -32.07543 -32.01223 -27.42097 -27.11673 -25.51967 -24.13709 -23.16063 -21.57753 -21.17785 -20.50354 -19.74234 -19.43751 -17.98838 -16.89242 -16.16667 -15.76927 -15.47468 -15.21091 -14.69516 -14.58840 -14.47856 -14.02485 -13.71105 -13.36349 -13.23454 -12.99310 -12.79118 -12.69135 -12.44803 -11.85541 -11.65749 -11.57864 -11.50971 -11.31131 -11.15708 -11.00045 -10.96994 -10.96378 -10.53001 -10.31075 -10.30207 -9.70880 -9.24973 -9.02298 -8.88271 -8.56072 -8.40981 -8.18917 -6.10761 -4.19421 1.74542 2.59440 3.26847 3.34159 3.37177 3.41566 3.73729 3.95948 4.35119 4.38764 4.48416 4.63468 4.77795 4.88556 5.00817 5.10012 5.18391 5.29644 5.30952 5.41502 5.49261 5.60954 5.62678 5.68146 5.77933 5.87797 5.94546 6.06372 6.11572 6.26539 6.31237 6.39435 6.46833 6.65162 6.75426 6.99557 7.03202 7.21940 7.34771 7.40858 7.80361 7.84888 8.14656 8.30004 8.52684 8.82534 9.48312 10.97156 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.003271 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.291891 B = 8558.751473 C = 9406.515414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.152 4.152 5 H 0.109 0.891 6 C -0.186 4.186 7 C 0.083 3.917 8 H 0.140 0.860 9 N -0.680 5.680 10 C 0.513 3.487 11 O -0.517 6.517 12 C 0.496 3.504 13 O -0.541 6.541 14 N -0.664 5.664 15 C 0.159 3.841 16 C 0.027 3.973 17 C -0.502 4.502 18 H 0.062 0.938 19 C 0.074 3.926 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.272 1.272 24 H -0.286 1.286 25 C -0.208 4.208 26 C -0.150 4.150 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 10.690 -11.413 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.172 4.172 5 H 0.127 0.873 6 C -0.225 4.225 7 C -0.023 4.023 8 H 0.158 0.842 9 N -0.332 5.332 10 C 0.295 3.705 11 O -0.391 6.391 12 C 0.275 3.725 13 O -0.420 6.420 14 N -0.314 5.314 15 C 0.036 3.964 16 C 0.026 3.974 17 C -0.540 4.540 18 H 0.081 0.919 19 C -0.130 4.130 20 N -0.512 5.512 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.197 1.197 24 H -0.212 1.212 25 C -0.246 4.246 26 C -0.188 4.188 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.599 10.696 -11.191 19.344 hybrid contribution -0.885 0.015 -0.210 0.910 sum 10.714 10.710 -11.401 18.960 Atomic orbital electron populations 1.21847 0.94655 1.02368 1.01788 1.20701 0.95944 0.95945 0.95702 1.21805 1.00996 0.95479 1.01853 1.22941 1.02930 0.90897 1.00407 0.87314 1.23622 0.93000 1.02544 1.03322 1.21746 0.98288 0.96605 0.85635 0.84247 1.45117 1.47839 1.31957 1.08246 1.20516 0.79120 0.80590 0.90316 1.90745 1.48092 1.55849 1.44403 1.19853 0.81233 0.82933 0.88470 1.90710 1.51076 1.56685 1.43571 1.45883 1.49766 1.23657 1.12045 1.21199 0.97118 0.98617 0.79425 1.19018 0.94227 0.85343 0.98836 1.20396 0.89704 1.44822 0.99042 0.91949 1.24987 0.98954 0.94602 0.94455 1.69965 1.30758 1.37684 1.12782 0.86601 0.83884 0.78682 0.78972 1.20572 1.19718 1.21159 1.23002 0.96588 1.02465 1.02508 1.22542 1.01116 1.04830 0.90326 0.92647 0.92256 0.92488 0.90938 0.92595 0.92600 0.92575 0.88316 0.87851 0.75112 0.75033 0.90095 0.93601 0.92802 0.90169 0.91508 0.91543 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.03 37.16 0.34 -0.94 16 2 C -0.06 -0.49 3.07 -90.62 -0.28 -0.77 16 3 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 4 C -0.15 -1.28 5.07 -90.62 -0.46 -1.74 16 5 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 6 C -0.19 -1.53 10.10 -26.74 -0.27 -1.80 16 7 C 0.08 0.90 5.63 -67.94 -0.38 0.51 16 8 H 0.14 1.66 6.87 -51.93 -0.36 1.31 16 9 N -0.68 -8.82 5.56 -54.24 -0.30 -9.12 16 10 C 0.51 8.54 7.89 -11.58 -0.09 8.45 16 11 O -0.52 -9.58 16.07 5.50 0.09 -9.49 16 12 C 0.50 9.42 7.88 -11.58 -0.09 9.33 16 13 O -0.54 -11.08 16.47 5.51 0.09 -10.99 16 14 N -0.66 -13.45 5.46 -60.73 -0.33 -13.78 16 15 C 0.16 3.56 5.53 -4.04 -0.02 3.54 16 16 C 0.03 0.62 1.32 -155.65 -0.21 0.42 16 17 C -0.50 -13.00 8.57 -34.44 -0.30 -13.29 16 18 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 19 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 20 N -0.88 -24.06 13.09 55.43 0.73 -23.33 16 21 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 C -0.21 -4.31 9.96 -26.73 -0.27 -4.57 16 26 C -0.15 -3.35 9.66 -26.73 -0.26 -3.61 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 7.29 -51.93 -0.38 0.20 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.41 4.86 8.31 -40.82 -0.34 4.52 16 37 H 0.41 8.28 7.84 -40.82 -0.32 7.96 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 40 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -28.75 373.93 -8.41 -37.16 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.26 Total: 11.43 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.04 Total: -3.21 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.09 Total: -46.23 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.75 -8.41 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261410052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.704 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds