Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.53003 * 109.47376 * 120.00242 * 2 1 3 5 5 H 1.09000 * 115.55686 * 274.31399 * 4 2 1 6 6 C 1.52992 * 117.50205 * 128.61981 * 4 2 1 7 7 C 1.52998 * 117.50164 * 59.99385 * 4 2 1 8 8 H 1.09006 * 117.51526 * 0.02562 * 7 4 2 9 9 N 1.46494 * 117.50180 * 214.98331 * 7 4 2 10 10 C 1.34779 * 119.99757 * 154.98967 * 9 7 4 11 11 O 1.21345 * 120.00263 * 359.97438 * 10 9 7 12 12 C 1.49457 * 119.99809 * 180.02562 * 10 9 7 13 13 O 1.21340 * 119.99864 * 5.08623 * 12 10 9 14 14 N 1.34773 * 119.99770 * 185.08971 * 12 10 9 15 15 C 1.46499 * 120.00072 * 185.00703 * 14 12 10 16 16 C 1.53000 * 109.47568 * 184.77088 * 15 14 12 17 17 C 1.50699 * 115.55169 * 294.82822 * 16 15 14 18 18 H 1.07996 * 120.00355 * 99.44295 * 17 16 15 19 19 C 1.37874 * 119.99684 * 279.43992 * 17 16 15 20 20 N 1.31523 * 120.00135 * 5.14854 * 19 17 16 21 21 Si 1.86801 * 120.00109 * 185.14981 * 19 17 16 22 22 H 1.48502 * 109.47011 * 270.00159 * 21 19 17 23 23 H 1.48502 * 109.47012 * 29.99917 * 21 19 17 24 24 H 1.48495 * 109.47305 * 149.99978 * 21 19 17 25 25 C 1.53007 * 117.51310 * 80.52608 * 16 15 14 26 26 C 1.53002 * 59.99998 * 107.48119 * 25 16 15 27 27 H 1.08990 * 109.46985 * 60.00109 * 1 2 3 28 28 H 1.09007 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46920 * 299.99851 * 1 2 3 30 30 H 1.09002 * 109.47440 * 240.00197 * 2 1 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47098 * 299.99821 * 3 2 1 33 33 H 1.09003 * 109.47098 * 60.00258 * 3 2 1 34 34 H 1.09008 * 117.49912 * 145.02048 * 6 4 2 35 35 H 1.08998 * 117.51849 * 359.97438 * 6 4 2 36 36 H 0.96995 * 120.00128 * 334.98449 * 9 7 4 37 37 H 0.97002 * 120.00399 * 5.00826 * 14 12 10 38 38 H 1.09007 * 109.46807 * 64.77149 * 15 14 12 39 39 H 1.08994 * 109.47371 * 304.77867 * 15 14 12 40 40 H 0.97000 * 119.99622 * 174.99957 * 20 19 17 41 41 H 1.09002 * 117.49349 * 214.97184 * 25 16 15 42 42 H 1.09000 * 117.49979 * 359.97438 * 25 16 15 43 43 H 1.08996 * 117.49484 * 252.50633 * 26 25 16 44 44 H 1.09002 * 117.49449 * 107.48670 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0066 -2.6350 0.6661 9 7 1.3953 -2.6529 2.8016 10 6 0.5846 -3.7071 3.0205 11 8 0.0534 -4.2686 2.0850 12 6 0.3389 -4.1839 4.4155 13 8 0.7938 -3.5674 5.3563 14 7 -0.3880 -5.2987 4.6283 15 6 -0.7217 -5.7056 5.9955 16 6 -1.4432 -7.0545 5.9645 17 6 -2.7911 -7.0554 5.2907 18 1 -2.8856 -7.4027 4.2725 19 6 -3.9037 -6.6128 5.9742 20 7 -3.7743 -6.0959 7.1766 21 14 -5.5949 -6.7475 5.1925 22 1 -5.8837 -5.5116 4.4215 23 1 -5.6267 -7.9188 4.2802 24 1 -6.6188 -6.9191 6.2543 25 6 -0.5836 -8.3128 5.8267 26 6 -1.2520 -7.9856 7.1635 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.8416 -1.9465 1.8168 35 1 3.3910 -2.0484 0.0313 36 1 1.8196 -2.2040 3.5494 37 1 -0.6901 -5.8317 3.8763 38 1 -1.3710 -4.9567 6.4492 39 1 0.1930 -5.7962 6.5812 40 1 -4.5457 -5.7185 7.6278 41 1 -0.9932 -9.1412 5.2487 42 1 0.4960 -8.1797 5.7577 43 1 -0.6121 -7.6373 7.9742 44 1 -2.1013 -8.5988 7.4649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261410052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = -56.651595 kcal Electronic energy + Delta-G solvation = -23349.613123 eV Core-core repulsion = 19881.263175 eV Total energy + Delta-G solvation = -3468.349948 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71050 -40.05425 -38.95981 -38.47061 -35.73131 -34.88953 -34.01052 -33.02513 -28.79145 -28.00747 -27.45841 -25.49953 -23.84716 -23.00419 -22.49741 -21.57535 -21.36749 -20.64578 -19.43923 -18.17255 -17.93401 -17.01157 -16.96771 -16.59200 -16.33909 -15.80445 -15.63213 -15.23860 -15.12649 -14.82514 -14.44845 -14.00570 -13.78946 -13.64783 -13.52720 -13.49965 -13.03772 -12.95640 -12.85846 -12.76894 -12.36690 -12.35856 -12.16294 -12.04804 -11.88694 -11.59147 -11.51808 -11.05085 -10.89411 -10.74635 -10.49879 -10.15393 -9.97543 -9.83768 -8.12360 -6.25124 0.33025 1.30848 1.41033 1.43846 1.52060 2.10398 2.41381 2.64418 2.86253 3.15773 3.38096 3.56894 3.65525 3.75420 3.96192 4.12151 4.18963 4.38966 4.43108 4.51009 4.62292 4.64295 4.67510 4.73662 4.83780 4.91794 4.93601 4.98244 4.99859 5.07617 5.20439 5.25366 5.27584 5.27907 5.35461 5.43363 5.52264 5.53648 5.62485 5.76456 5.98206 6.34651 6.44088 6.75525 6.81997 6.98144 7.44667 8.94958 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.003271 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.291891 B = 8558.751473 C = 9406.515414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.138 4.138 5 H 0.114 0.886 6 C -0.165 4.165 7 C 0.051 3.949 8 H 0.126 0.874 9 N -0.661 5.661 10 C 0.518 3.482 11 O -0.541 6.541 12 C 0.497 3.503 13 O -0.557 6.557 14 N -0.668 5.668 15 C 0.174 3.826 16 C 0.001 3.999 17 C -0.510 4.510 18 H 0.058 0.942 19 C 0.029 3.971 20 N -0.904 5.904 21 Si 0.946 3.054 22 H -0.281 1.281 23 H -0.267 1.267 24 H -0.285 1.285 25 C -0.179 4.179 26 C -0.155 4.155 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.419 0.581 37 H 0.415 0.585 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.345 11.377 -12.861 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.199 4.199 4 C -0.157 4.157 5 H 0.132 0.868 6 C -0.203 4.203 7 C -0.054 4.054 8 H 0.144 0.856 9 N -0.312 5.312 10 C 0.298 3.702 11 O -0.418 6.418 12 C 0.277 3.723 13 O -0.437 6.437 14 N -0.317 5.317 15 C 0.051 3.949 16 C 0.000 4.000 17 C -0.547 4.547 18 H 0.076 0.924 19 C -0.172 4.172 20 N -0.541 5.541 21 Si 0.772 3.228 22 H -0.207 1.207 23 H -0.191 1.191 24 H -0.211 1.211 25 C -0.216 4.216 26 C -0.194 4.194 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.257 0.743 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.130 11.409 -12.659 21.513 hybrid contribution -1.288 -0.140 0.210 1.313 sum 11.841 11.269 -12.449 20.547 Atomic orbital electron populations 1.21848 0.95598 1.01309 1.01963 1.20735 0.95103 0.96784 0.95567 1.21781 1.01485 0.94485 1.02104 1.23012 1.02039 0.89717 1.00973 0.86808 1.23716 0.91467 1.00696 1.04413 1.21919 1.00686 0.98843 0.83908 0.85604 1.45062 1.46057 1.30310 1.09735 1.19995 0.79957 0.81551 0.88670 1.90738 1.49556 1.57043 1.44413 1.20283 0.80280 0.82155 0.89580 1.90692 1.51546 1.56911 1.44519 1.45799 1.50325 1.24400 1.11182 1.20813 0.96464 0.97130 0.80473 1.19050 0.94291 0.86672 0.99969 1.20667 0.91077 1.44042 0.98936 0.92374 1.25635 1.01955 0.94634 0.94965 1.70067 1.31325 1.38810 1.13890 0.85736 0.80331 0.78545 0.78147 1.20698 1.19124 1.21110 1.22998 0.97511 1.00574 1.00542 1.22493 1.01127 1.04562 0.91187 0.91614 0.93899 0.93225 0.90098 0.91769 0.91920 0.92837 0.87393 0.86255 0.74307 0.74904 0.93693 0.92880 0.93050 0.89735 0.89129 0.90455 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.03 71.98 0.65 -1.75 16 2 C -0.06 -0.82 3.07 -10.79 -0.03 -0.86 16 3 C -0.14 -1.49 9.18 71.98 0.66 -0.83 16 4 C -0.14 -2.02 5.07 -10.80 -0.05 -2.07 16 5 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 6 C -0.16 -2.25 10.10 30.59 0.31 -1.94 16 7 C 0.05 1.03 5.63 44.99 0.25 1.29 16 8 H 0.13 2.95 6.87 -2.38 -0.02 2.93 16 9 N -0.66 -16.49 5.56 -443.87 -2.47 -18.96 16 10 C 0.52 17.07 7.89 87.27 0.69 17.76 16 11 O -0.54 -20.08 16.07 -3.23 -0.05 -20.13 16 12 C 0.50 18.85 7.88 87.27 0.69 19.54 16 13 O -0.56 -22.69 16.47 -3.22 -0.05 -22.75 16 14 N -0.67 -27.16 5.46 -464.42 -2.54 -29.70 16 15 C 0.17 7.89 5.53 86.38 0.48 8.37 16 16 C 0.00 0.04 1.32 -52.92 -0.07 -0.03 16 17 C -0.51 -26.52 8.57 25.60 0.22 -26.30 16 18 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 19 C 0.03 1.56 5.42 84.65 0.46 2.02 16 20 N -0.90 -50.53 13.09 21.45 0.28 -50.24 16 21 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 25 C -0.18 -7.13 9.96 30.60 0.30 -6.83 16 26 C -0.16 -6.90 9.66 30.60 0.30 -6.61 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.82 7.29 -2.38 -0.02 0.80 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.95 7.90 -2.39 -0.02 0.93 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 36 H 0.42 9.31 8.31 -92.71 -0.77 8.54 16 37 H 0.41 16.67 7.84 -92.71 -0.73 15.94 16 38 H 0.04 2.34 8.14 -2.38 -0.02 2.33 16 39 H 0.05 2.29 8.05 -2.39 -0.02 2.27 16 40 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -61.45 373.93 1.55 -59.90 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.49 Total: 35.22 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.85 Total: 1.76 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.72 Total: -98.90 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.10 Total: -42.88 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.45 1.55 -59.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261410052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.247 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds