Wall clock time and date at job start Tue Mar 31 2020 07:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47064 * 2 1 4 4 C 1.52997 * 109.46688 * 240.00179 * 2 1 3 5 5 N 1.46491 * 109.47112 * 120.00474 * 2 1 3 6 6 C 1.34780 * 120.00299 * 59.99961 * 5 2 1 7 7 O 1.21281 * 119.99835 * 359.97438 * 6 5 2 8 8 C 1.50701 * 119.99923 * 180.02562 * 6 5 2 9 9 C 1.53003 * 119.53863 * 109.29497 * 8 6 5 10 10 C 1.53002 * 60.55612 * 111.76483 * 9 8 6 11 11 H 1.09006 * 120.25593 * 248.52059 * 10 9 8 12 12 C 1.54384 * 118.12615 * 91.54086 * 10 9 8 13 13 N 1.49083 * 104.16666 * 271.52508 * 12 10 9 14 14 C 1.34771 * 128.29550 * 220.07290 * 13 12 10 15 15 O 1.21288 * 120.00341 * 180.87441 * 14 13 12 16 16 C 1.50700 * 120.00060 * 0.87306 * 14 13 12 17 17 C 1.50701 * 109.47300 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00151 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99921 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00096 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00124 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47358 * 90.00381 * 21 19 17 23 23 H 1.48502 * 109.47507 * 209.99912 * 21 19 17 24 24 H 1.48497 * 109.47457 * 330.00226 * 21 19 17 25 25 C 1.48148 * 103.86368 * 40.78406 * 13 12 10 26 26 H 1.09009 * 109.47107 * 299.99679 * 1 2 3 27 27 H 1.08998 * 109.47407 * 59.99248 * 1 2 3 28 28 H 1.09001 * 109.47682 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46802 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47832 * 300.00241 * 3 2 1 31 31 H 1.08998 * 109.47116 * 60.00611 * 3 2 1 32 32 H 1.08991 * 109.47632 * 300.00003 * 4 2 1 33 33 H 1.09004 * 109.47159 * 60.00188 * 4 2 1 34 34 H 1.09006 * 109.46799 * 179.97438 * 4 2 1 35 35 H 0.97002 * 120.00379 * 239.99886 * 5 2 1 36 36 H 1.08999 * 117.44279 * 4.11154 * 9 8 6 37 37 H 1.09005 * 117.44054 * 219.41166 * 9 8 6 38 38 H 1.09006 * 110.40310 * 31.59445 * 12 10 9 39 39 H 1.09007 * 110.40957 * 154.02132 * 12 10 9 40 40 H 1.08993 * 109.47132 * 300.00427 * 16 14 13 41 41 H 1.09001 * 109.46912 * 60.00020 * 16 14 13 42 42 H 0.96999 * 120.00214 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.40727 * 200.92807 * 25 13 12 44 44 H 1.09003 * 110.50708 * 78.54301 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1960 6 6 1.6927 -1.9811 1.4093 7 8 0.9951 -2.5703 0.6112 8 6 2.1946 -2.6913 2.6400 9 6 1.2125 -3.0508 3.7568 10 6 1.8477 -4.1673 2.9256 11 1 1.2381 -4.7572 2.2411 12 6 3.1634 -4.7947 3.4343 13 7 4.2294 -3.9369 2.8425 14 6 5.4118 -4.3161 2.3187 15 8 6.1801 -3.4820 1.8885 16 6 5.7795 -5.7767 2.2675 17 6 7.1416 -5.9302 1.6412 18 1 7.6867 -5.0574 1.3134 19 6 7.6918 -7.1849 1.4866 20 7 8.8807 -7.3189 0.9405 21 14 6.7493 -8.6945 2.0541 22 1 5.9061 -9.1992 0.9407 23 1 7.7081 -9.7507 2.4667 24 1 5.8842 -8.3340 3.2060 25 6 3.6952 -2.5618 2.9792 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6765 -0.2073 -2.1392 34 1 3.1299 -0.7208 -1.2495 35 1 2.5760 -0.2194 1.8346 36 1 0.1576 -2.8357 3.5864 37 1 1.5554 -2.9325 4.7847 38 1 3.1940 -4.7821 4.5239 39 1 3.2673 -5.8140 3.0621 40 1 5.7972 -6.1826 3.2788 41 1 5.0426 -6.3161 1.6723 42 1 9.2676 -8.2016 0.8314 43 1 4.1874 -1.8911 2.2750 44 1 3.8245 -2.2016 3.9998 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269023050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:55 Heat of formation + Delta-G solvation = -36.796795 kcal Electronic energy + Delta-G solvation = -24388.542743 eV Core-core repulsion = 20921.053764 eV Total energy + Delta-G solvation = -3467.488979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94138 -39.35191 -37.76026 -36.37023 -33.26063 -32.84937 -32.22301 -29.89877 -28.38967 -27.61758 -27.39018 -26.05071 -23.97865 -22.60797 -21.33564 -20.02995 -19.43263 -18.74091 -17.41862 -16.92899 -16.04367 -15.68317 -15.50470 -15.11165 -14.91980 -14.70043 -14.22750 -14.00681 -13.78081 -13.58835 -13.23320 -12.99120 -12.68921 -12.45888 -12.30261 -12.27736 -12.01619 -11.89169 -11.79611 -11.68247 -11.52454 -11.32866 -11.21722 -10.85041 -10.65624 -10.56376 -10.26911 -9.95912 -9.61786 -9.26268 -9.21123 -8.84376 -8.58694 -8.37631 -6.03731 -4.03734 2.42730 2.92617 3.26057 3.30069 3.32333 3.35293 3.41134 3.47253 4.34289 4.37718 4.40355 4.44173 4.66236 4.71542 4.77891 4.86069 5.04493 5.26800 5.28784 5.33804 5.40790 5.41425 5.50020 5.53019 5.56854 5.64506 5.67090 5.73181 5.77010 5.78063 5.83285 5.89831 6.04435 6.11082 6.25286 6.46011 6.50675 6.65408 6.89846 7.41552 7.53128 8.03551 8.16157 8.53373 9.00723 9.15827 9.54250 11.09240 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.003914 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.678871 B = 7151.504060 C = 7732.404566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.167 4.167 5 N -0.719 5.719 6 C 0.568 3.432 7 O -0.533 6.533 8 C -0.197 4.197 9 C -0.107 4.107 10 C -0.135 4.135 11 H 0.130 0.870 12 C 0.128 3.872 13 N -0.637 5.637 14 C 0.547 3.453 15 O -0.527 6.527 16 C -0.022 4.022 17 C -0.514 4.514 18 H 0.092 0.908 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.143 3.857 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.400 0.600 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 14.178 5.323 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.225 4.225 5 N -0.371 5.371 6 C 0.354 3.646 7 O -0.409 6.409 8 C -0.202 4.202 9 C -0.145 4.145 10 C -0.154 4.154 11 H 0.148 0.852 12 C 0.005 3.995 13 N -0.375 5.375 14 C 0.339 3.661 15 O -0.401 6.401 16 C -0.062 4.062 17 C -0.552 4.552 18 H 0.110 0.890 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.701 3.299 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.191 1.191 25 C 0.019 3.981 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.748 14.031 4.344 24.612 hybrid contribution -0.186 -0.609 0.479 0.796 sum -19.934 13.423 4.823 24.511 Atomic orbital electron populations 1.22219 0.94312 1.03945 1.01551 1.20341 0.94293 0.91794 0.85243 1.22090 1.01947 0.94374 1.02893 1.22244 1.01443 1.02731 0.96033 1.46074 1.53965 1.11861 1.25227 1.19093 0.79086 0.81208 0.85188 1.90635 1.38120 1.66180 1.45983 1.22818 0.96668 1.02026 0.98661 1.23065 0.97391 0.98892 0.95111 1.23863 0.99354 0.89259 1.02971 0.85204 1.22001 0.83819 0.95831 0.97875 1.49809 1.18603 1.06331 1.62772 1.21218 0.77384 0.93164 0.74355 1.90600 1.48761 1.54580 1.46191 1.19661 0.99642 0.87787 0.99091 1.20992 0.99296 0.95386 1.39558 0.89006 1.24961 0.94860 0.98565 0.94795 1.69892 1.16011 1.23507 1.44073 0.86895 0.80164 0.83271 0.79611 1.20058 1.21046 1.19064 1.21471 0.88054 0.87128 1.01408 0.92822 0.91947 0.90376 0.91689 0.90842 0.91971 0.90301 0.91950 0.92379 0.76506 0.87521 0.87593 0.90386 0.89166 0.93558 0.94004 0.92556 0.89765 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.40 37.16 0.31 -1.24 16 2 C 0.17 1.66 1.06 -131.83 -0.14 1.53 16 3 C -0.16 -1.12 8.59 37.16 0.32 -0.80 16 4 C -0.17 -1.96 8.40 37.16 0.31 -1.65 16 5 N -0.72 -7.60 4.97 -47.61 -0.24 -7.84 16 6 C 0.57 7.49 6.83 -10.98 -0.07 7.41 16 7 O -0.53 -8.58 13.03 5.56 0.07 -8.51 16 8 C -0.20 -2.34 2.79 -154.26 -0.43 -2.77 16 9 C -0.11 -0.93 9.89 -26.73 -0.26 -1.19 16 10 C -0.13 -1.57 6.77 -89.22 -0.60 -2.17 16 11 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 12 C 0.13 1.67 6.80 -1.89 -0.01 1.66 16 13 N -0.64 -11.00 3.33 -168.52 -0.56 -11.56 16 14 C 0.55 12.49 7.92 -10.99 -0.09 12.40 16 15 O -0.53 -14.04 15.73 5.55 0.09 -13.95 16 16 C -0.02 -0.54 3.52 -29.03 -0.10 -0.64 16 17 C -0.51 -15.30 9.48 -34.44 -0.33 -15.62 16 18 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 21 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 25 C 0.14 1.95 6.48 -2.41 -0.02 1.94 16 26 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.39 8.19 -40.82 -0.33 3.06 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.21 7.32 -51.93 -0.38 0.83 16 40 H 0.05 1.05 7.20 -51.93 -0.37 0.68 16 41 H 0.04 0.97 7.41 -51.93 -0.38 0.58 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.08 1.26 7.52 -51.93 -0.39 0.87 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -36.28 354.62 -7.51 -43.79 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.11 Total: 2.84 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.21 Total: 0.81 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.03 Total: -46.70 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.46 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.28 -7.51 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.993 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds