Wall clock time and date at job start Tue Mar 31 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47064 * 2 1 4 4 C 1.52997 * 109.46688 * 240.00179 * 2 1 3 5 5 N 1.46491 * 109.47112 * 120.00474 * 2 1 3 6 6 C 1.34780 * 120.00299 * 59.99961 * 5 2 1 7 7 O 1.21281 * 119.99835 * 359.97438 * 6 5 2 8 8 C 1.50701 * 119.99923 * 180.02562 * 6 5 2 9 9 C 1.53003 * 119.53863 * 109.29497 * 8 6 5 10 10 C 1.53002 * 60.55612 * 111.76483 * 9 8 6 11 11 H 1.09006 * 120.25593 * 248.52059 * 10 9 8 12 12 C 1.54384 * 118.12615 * 91.54086 * 10 9 8 13 13 N 1.49083 * 104.16666 * 271.52508 * 12 10 9 14 14 C 1.34771 * 128.29550 * 220.07290 * 13 12 10 15 15 O 1.21288 * 120.00341 * 180.87441 * 14 13 12 16 16 C 1.50700 * 120.00060 * 0.87306 * 14 13 12 17 17 C 1.50701 * 109.47300 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00151 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99921 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00096 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00124 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47358 * 90.00381 * 21 19 17 23 23 H 1.48502 * 109.47507 * 209.99912 * 21 19 17 24 24 H 1.48497 * 109.47457 * 330.00226 * 21 19 17 25 25 C 1.48148 * 103.86368 * 40.78406 * 13 12 10 26 26 H 1.09009 * 109.47107 * 299.99679 * 1 2 3 27 27 H 1.08998 * 109.47407 * 59.99248 * 1 2 3 28 28 H 1.09001 * 109.47682 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46802 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47832 * 300.00241 * 3 2 1 31 31 H 1.08998 * 109.47116 * 60.00611 * 3 2 1 32 32 H 1.08991 * 109.47632 * 300.00003 * 4 2 1 33 33 H 1.09004 * 109.47159 * 60.00188 * 4 2 1 34 34 H 1.09006 * 109.46799 * 179.97438 * 4 2 1 35 35 H 0.97002 * 120.00379 * 239.99886 * 5 2 1 36 36 H 1.08999 * 117.44279 * 4.11154 * 9 8 6 37 37 H 1.09005 * 117.44054 * 219.41166 * 9 8 6 38 38 H 1.09006 * 110.40310 * 31.59445 * 12 10 9 39 39 H 1.09007 * 110.40957 * 154.02132 * 12 10 9 40 40 H 1.08993 * 109.47132 * 300.00427 * 16 14 13 41 41 H 1.09001 * 109.46912 * 60.00020 * 16 14 13 42 42 H 0.96999 * 120.00214 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.40727 * 200.92807 * 25 13 12 44 44 H 1.09003 * 110.50708 * 78.54301 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1960 6 6 1.6927 -1.9811 1.4093 7 8 0.9951 -2.5703 0.6112 8 6 2.1946 -2.6913 2.6400 9 6 1.2125 -3.0508 3.7568 10 6 1.8477 -4.1673 2.9256 11 1 1.2381 -4.7572 2.2411 12 6 3.1634 -4.7947 3.4343 13 7 4.2294 -3.9369 2.8425 14 6 5.4118 -4.3161 2.3187 15 8 6.1801 -3.4820 1.8885 16 6 5.7795 -5.7767 2.2675 17 6 7.1416 -5.9302 1.6412 18 1 7.6867 -5.0574 1.3134 19 6 7.6918 -7.1849 1.4866 20 7 8.8807 -7.3189 0.9405 21 14 6.7493 -8.6945 2.0541 22 1 5.9061 -9.1992 0.9407 23 1 7.7081 -9.7507 2.4667 24 1 5.8842 -8.3340 3.2060 25 6 3.6952 -2.5618 2.9792 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6765 -0.2073 -2.1392 34 1 3.1299 -0.7208 -1.2495 35 1 2.5760 -0.2194 1.8346 36 1 0.1576 -2.8357 3.5864 37 1 1.5554 -2.9325 4.7847 38 1 3.1940 -4.7821 4.5239 39 1 3.2673 -5.8140 3.0621 40 1 5.7972 -6.1826 3.2788 41 1 5.0426 -6.3161 1.6723 42 1 9.2676 -8.2016 0.8314 43 1 4.1874 -1.8911 2.2750 44 1 3.8245 -2.2016 3.9998 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:54 Heat of formation + Delta-G solvation = -63.607824 kcal Electronic energy + Delta-G solvation = -24389.705356 eV Core-core repulsion = 20921.053764 eV Total energy + Delta-G solvation = -3468.651592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97211 -40.56332 -39.19643 -37.36259 -35.06766 -34.55407 -33.12575 -31.84023 -29.51368 -28.31863 -28.24558 -27.45688 -25.16886 -24.30627 -22.23318 -20.95003 -20.40743 -20.19056 -19.14418 -18.39770 -17.30575 -16.89204 -16.80629 -16.67051 -16.02897 -15.92415 -15.70070 -15.16052 -14.81892 -14.74765 -14.59289 -14.28201 -14.04469 -13.44408 -13.39848 -13.26997 -13.13296 -13.01993 -12.94398 -12.80041 -12.62996 -12.55660 -12.44355 -12.17780 -12.04727 -11.88966 -11.61552 -11.50505 -11.20101 -10.81852 -10.65326 -10.51788 -10.12680 -9.75066 -8.29229 -6.38432 1.37186 1.41326 1.46238 1.51852 1.74503 1.93365 2.15020 2.36010 2.45047 3.03709 3.39581 3.42625 3.60888 3.82197 3.89826 3.95263 4.05498 4.09027 4.17227 4.43684 4.60557 4.61331 4.63185 4.66504 4.67246 4.74814 4.75651 4.79794 4.81108 4.90723 4.94498 4.95325 5.03059 5.16231 5.16356 5.24347 5.27907 5.35354 5.47601 5.59388 6.22194 6.50220 6.55384 6.78823 7.20870 7.22844 7.35196 8.88400 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.003914 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.678871 B = 7151.504060 C = 7732.404566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 C -0.149 4.149 4 C -0.165 4.165 5 N -0.711 5.711 6 C 0.559 3.441 7 O -0.570 6.570 8 C -0.209 4.209 9 C -0.061 4.061 10 C -0.145 4.145 11 H 0.120 0.880 12 C 0.122 3.878 13 N -0.636 5.636 14 C 0.541 3.459 15 O -0.586 6.586 16 C -0.018 4.018 17 C -0.537 4.537 18 H 0.027 0.973 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.226 1.226 25 C 0.142 3.858 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.411 0.589 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.269 0.731 43 H 0.061 0.939 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.395 14.189 8.198 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.078 3.922 3 C -0.206 4.206 4 C -0.223 4.223 5 N -0.363 5.363 6 C 0.346 3.654 7 O -0.449 6.449 8 C -0.214 4.214 9 C -0.099 4.099 10 C -0.164 4.164 11 H 0.138 0.862 12 C 0.001 3.999 13 N -0.371 5.371 14 C 0.332 3.668 15 O -0.465 6.465 16 C -0.057 4.057 17 C -0.575 4.575 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.149 1.149 25 C 0.019 3.981 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.247 0.753 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.207 14.090 7.268 28.106 hybrid contribution 0.876 -0.505 -0.493 1.125 sum -22.331 13.585 6.775 27.002 Atomic orbital electron populations 1.22141 0.93679 1.02490 1.03017 1.20497 0.94805 0.92996 0.83929 1.22053 1.01652 0.92404 1.04501 1.22227 1.00310 1.01401 0.98393 1.46093 1.53332 1.11352 1.25491 1.19452 0.78800 0.81842 0.85336 1.90629 1.40042 1.67094 1.47170 1.22742 0.96191 1.02414 1.00039 1.23253 0.97184 0.94051 0.95380 1.23831 0.99224 0.89010 1.04372 0.86231 1.22371 0.82728 0.95011 0.99822 1.49671 1.17479 1.09192 1.60791 1.20897 0.78851 0.92289 0.74740 1.90572 1.51293 1.55536 1.49102 1.19521 0.96674 0.89629 0.99887 1.21155 1.01890 0.93842 1.40653 0.95421 1.26134 0.95885 1.02888 0.94405 1.70088 1.18524 1.24880 1.45696 0.85562 0.78854 0.77069 0.80532 1.19004 1.20699 1.14868 1.21678 0.88811 0.84727 1.02842 0.91368 0.90448 0.93203 0.92135 0.89483 0.90129 0.93607 0.90014 0.93979 0.75270 0.86201 0.84231 0.86519 0.89476 0.90977 0.92315 0.92199 0.92052 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.40 71.98 0.60 -2.16 16 2 C 0.16 3.08 1.06 3.60 0.00 3.09 16 3 C -0.15 -1.86 8.59 71.98 0.62 -1.24 16 4 C -0.17 -4.01 8.40 71.98 0.60 -3.41 16 5 N -0.71 -14.48 4.97 -422.94 -2.10 -16.58 16 6 C 0.56 14.39 6.83 87.66 0.60 14.99 16 7 O -0.57 -18.65 13.03 -3.03 -0.04 -18.69 16 8 C -0.21 -4.48 2.79 -52.02 -0.15 -4.62 16 9 C -0.06 -0.77 9.89 30.60 0.30 -0.47 16 10 C -0.14 -2.92 6.77 -9.89 -0.07 -2.99 16 11 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 12 C 0.12 2.76 6.80 86.35 0.59 3.34 16 13 N -0.64 -21.12 3.33 -805.48 -2.69 -23.81 16 14 C 0.54 25.16 7.92 87.66 0.69 25.85 16 15 O -0.59 -33.09 15.73 -3.06 -0.05 -33.14 16 16 C -0.02 -0.84 3.52 29.10 0.10 -0.74 16 17 C -0.54 -33.38 9.48 25.60 0.24 -33.14 16 18 H 0.03 2.02 7.00 -2.91 -0.02 2.00 16 19 C 0.00 0.21 5.47 84.65 0.46 0.67 16 20 N -0.95 -62.07 13.96 21.45 0.30 -61.77 16 21 Si 0.96 42.85 27.47 68.60 1.88 44.74 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 25 C 0.14 3.63 6.48 86.53 0.56 4.19 16 26 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.20 6.17 -2.39 -0.01 1.18 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 1.42 6.17 -2.39 -0.01 1.40 16 33 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.41 6.44 8.19 -92.71 -0.76 5.68 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.09 2.04 7.32 -2.38 -0.02 2.02 16 40 H 0.07 3.09 7.20 -2.39 -0.02 3.07 16 41 H 0.06 2.62 7.41 -2.39 -0.02 2.60 16 42 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 43 H 0.06 1.85 7.52 -2.39 -0.02 1.84 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -87.84 354.62 2.66 -85.18 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.18 Total: 20.70 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.17 Total: 3.37 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.49 Total: -102.16 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.09 Total: -51.83 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.74 kcal Total: -87.84 2.66 -85.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.576 kcal (2) G-P(sol) polarization free energy of solvation -87.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds