Wall clock time and date at job start Tue Mar 31 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.34779 * 119.99802 * 60.00459 * 5 2 1 7 7 O 1.21282 * 119.99922 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00394 * 179.97438 * 6 5 2 9 9 C 1.54892 * 129.08976 * 299.94241 * 8 6 5 10 10 C 1.57168 * 77.91575 * 180.15954 * 9 8 6 11 11 N 1.46498 * 129.24714 * 179.19486 * 10 9 8 12 12 C 1.34785 * 120.00125 * 61.28405 * 11 10 9 13 13 O 1.21280 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99764 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.47012 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00133 * 359.97438 * 15 14 12 17 17 C 1.37879 * 120.00111 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00104 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99809 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47460 * 119.99612 * 19 17 15 22 22 H 1.48506 * 109.46685 * 239.99642 * 19 17 15 23 23 C 1.54407 * 129.01667 * 179.97438 * 8 6 5 24 24 C 1.54890 * 83.77206 * 317.35023 * 10 9 8 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 0.97004 * 120.00731 * 239.99865 * 5 2 1 35 35 H 1.09004 * 114.97296 * 291.95070 * 9 8 6 36 36 H 1.09000 * 114.98291 * 67.12247 * 9 8 6 37 37 H 0.96997 * 120.00007 * 241.27741 * 11 10 9 38 38 H 1.09003 * 109.47482 * 299.99262 * 14 12 11 39 39 H 1.09001 * 109.47846 * 59.99748 * 14 12 11 40 40 H 0.97003 * 120.00071 * 180.02562 * 18 17 15 41 41 H 1.08991 * 114.93990 * 293.13530 * 23 8 6 42 42 H 1.09007 * 114.92950 * 68.16402 * 23 8 6 43 43 H 1.08998 * 116.12662 * 290.12612 * 24 10 9 44 44 H 1.09007 * 113.83064 * 154.95730 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 1.6928 -0.2301 -2.4202 7 8 0.9952 0.7557 -2.5315 8 6 2.1955 -0.9401 -3.6508 9 6 3.6547 -1.1985 -4.1016 10 6 2.8291 -1.8646 -5.2614 11 7 3.3076 -2.5399 -6.4701 12 6 4.0703 -3.6465 -6.3668 13 8 4.3608 -4.0827 -5.2731 14 6 4.5629 -4.3408 -7.6102 15 6 5.3877 -5.5408 -7.2221 16 1 5.5404 -5.7768 -6.1793 17 6 5.9485 -6.3369 -8.1983 18 7 5.7631 -6.0493 -9.4681 19 14 6.9703 -7.8247 -7.7171 20 1 7.0263 -7.9291 -6.2369 21 1 6.3511 -9.0527 -8.2772 22 1 8.3465 -7.6748 -8.2548 23 6 1.9537 -0.5987 -5.1371 24 6 1.9540 -2.4021 -4.1020 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 2.5760 -1.4793 -1.1072 35 1 4.2111 -0.3075 -4.3927 36 1 4.2183 -1.8825 -3.4671 37 1 3.0755 -2.1909 -7.3448 38 1 3.7105 -4.6635 -8.2081 39 1 5.1753 -3.6523 -8.1925 40 1 6.1573 -6.6096 -10.1549 41 1 0.9240 -0.7173 -5.4742 42 1 2.4260 0.3220 -5.4798 43 1 2.4114 -3.1612 -3.4675 44 1 0.9287 -2.6303 -4.3934 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269023966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:45 Heat of formation + Delta-G solvation = 10.766433 kcal Electronic energy + Delta-G solvation = -23658.896626 eV Core-core repulsion = 20193.470143 eV Total energy + Delta-G solvation = -3465.426483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.07886 -39.80896 -38.17832 -36.55349 -33.05650 -32.95198 -32.16603 -28.92324 -27.69507 -27.49919 -25.83090 -25.74235 -25.38536 -23.72467 -21.16491 -19.89497 -19.54740 -18.54914 -17.34037 -16.33889 -16.12871 -15.86751 -15.24591 -15.13535 -14.47334 -14.45354 -14.34184 -14.15036 -13.95446 -13.82551 -13.35923 -12.79436 -12.54293 -12.43092 -12.39278 -12.14332 -11.97259 -11.76083 -11.42822 -11.42414 -11.25665 -11.21442 -11.11805 -10.77754 -10.68119 -10.41705 -10.29506 -9.99130 -9.77744 -9.29610 -9.29604 -8.72239 -8.55345 -8.45018 -6.09205 -4.08908 2.35832 2.82601 3.31238 3.38387 3.44933 3.55160 3.56556 4.15800 4.32893 4.39349 4.43152 4.44224 4.50844 4.62633 4.64986 4.75289 4.82841 5.22125 5.29446 5.32860 5.46606 5.48178 5.54876 5.56117 5.61375 5.68605 5.69109 5.72906 5.90040 5.91908 5.99936 6.01677 6.04464 6.10786 6.27732 6.36972 6.99984 7.14754 7.27699 7.35122 7.92154 7.99628 8.08583 8.37459 9.02141 9.14606 9.56414 11.03211 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.002848 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.803858 B = 9828.286182 C =10460.352485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 C -0.165 4.165 4 C -0.156 4.156 5 N -0.719 5.719 6 C 0.588 3.412 7 O -0.531 6.531 8 C -0.168 4.168 9 C -0.104 4.104 10 C 0.114 3.886 11 N -0.696 5.696 12 C 0.519 3.481 13 O -0.535 6.535 14 C 0.006 3.994 15 C -0.508 4.508 16 H 0.076 0.924 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.084 4.084 24 C -0.099 4.099 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.261 0.739 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 13.464 16.206 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.222 4.222 4 C -0.214 4.214 5 N -0.371 5.371 6 C 0.374 3.626 7 O -0.407 6.407 8 C -0.172 4.172 9 C -0.143 4.143 10 C 0.024 3.976 11 N -0.347 5.347 12 C 0.310 3.690 13 O -0.410 6.410 14 C -0.033 4.033 15 C -0.546 4.546 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.122 4.122 24 C -0.138 4.138 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.240 0.760 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.556 13.749 16.732 23.671 hybrid contribution 0.719 -1.014 -0.283 1.275 sum -8.837 12.735 16.450 22.602 Atomic orbital electron populations 1.22236 0.94186 1.02324 1.03508 1.20356 0.94486 0.92713 0.84154 1.22234 1.01051 0.95458 1.03508 1.22096 1.01784 1.00879 0.96604 1.46085 1.53853 1.32132 1.04986 1.18446 0.78892 0.82952 0.82355 1.90632 1.37583 1.25930 1.86604 1.23419 1.00589 0.98978 0.94215 1.24843 0.92808 0.99978 0.96720 1.22923 0.94699 0.92842 0.87157 1.45216 1.54484 1.29158 1.05881 1.22147 0.75281 0.77865 0.93732 1.90523 1.56242 1.64373 1.29821 1.19255 0.97958 0.96297 0.89766 1.21188 1.30389 1.08828 0.94207 0.90591 1.25011 0.96624 0.98180 0.94827 1.69965 1.45362 1.39294 0.99373 0.86375 0.79690 0.82164 0.78905 1.19480 1.20999 1.21003 1.23943 0.99910 0.96859 0.91516 1.24370 1.00066 0.92957 0.96453 0.90281 0.91906 0.92622 0.91910 0.92629 0.90279 0.91788 0.91791 0.90816 0.76239 0.90585 0.89598 0.76038 0.93276 0.93272 0.92910 0.90109 0.90055 0.89477 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.40 37.16 0.31 -1.15 16 2 C 0.17 1.43 1.06 -131.82 -0.14 1.29 16 3 C -0.16 -1.46 8.40 37.15 0.31 -1.15 16 4 C -0.16 -0.97 8.59 37.16 0.32 -0.65 16 5 N -0.72 -6.94 5.11 -47.61 -0.24 -7.18 16 6 C 0.59 7.20 7.36 -10.98 -0.08 7.12 16 7 O -0.53 -7.78 13.31 5.56 0.07 -7.71 16 8 C -0.17 -2.07 3.36 -172.26 -0.58 -2.65 16 9 C -0.10 -1.40 7.93 -24.70 -0.20 -1.60 16 10 C 0.11 1.66 3.92 -147.16 -0.58 1.09 16 11 N -0.70 -11.61 5.71 -62.67 -0.36 -11.96 16 12 C 0.52 11.32 7.82 -10.98 -0.09 11.23 16 13 O -0.54 -13.15 15.38 5.56 0.09 -13.06 16 14 C 0.01 0.16 5.46 -29.04 -0.16 0.00 16 15 C -0.51 -14.40 8.92 -34.44 -0.31 -14.70 16 16 H 0.08 2.25 6.75 -52.49 -0.35 1.89 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 19 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.08 -1.02 7.78 -26.71 -0.21 -1.23 16 24 C -0.10 -1.34 7.76 -25.99 -0.20 -1.54 16 25 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 35 H 0.08 0.97 7.91 -51.93 -0.41 0.56 16 36 H 0.09 1.23 7.97 -51.93 -0.41 0.82 16 37 H 0.40 5.63 8.83 -40.82 -0.36 5.27 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 42 H 0.08 0.93 7.91 -51.92 -0.41 0.52 16 43 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 44 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -32.71 361.48 -8.08 -40.79 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.11 Total: 4.71 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.69 Total: -2.51 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.14 Total: -44.44 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.16 Total: -20.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.71 -8.08 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.554 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds