Wall clock time and date at job start Tue Mar 31 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.34779 * 119.99802 * 60.00459 * 5 2 1 7 7 O 1.21282 * 119.99922 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00394 * 179.97438 * 6 5 2 9 9 C 1.54892 * 129.08976 * 299.94241 * 8 6 5 10 10 C 1.57168 * 77.91575 * 180.15954 * 9 8 6 11 11 N 1.46498 * 129.24714 * 179.19486 * 10 9 8 12 12 C 1.34785 * 120.00125 * 61.28405 * 11 10 9 13 13 O 1.21280 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99764 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.47012 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00133 * 359.97438 * 15 14 12 17 17 C 1.37879 * 120.00111 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00104 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99809 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47460 * 119.99612 * 19 17 15 22 22 H 1.48506 * 109.46685 * 239.99642 * 19 17 15 23 23 C 1.54407 * 129.01667 * 179.97438 * 8 6 5 24 24 C 1.54890 * 83.77206 * 317.35023 * 10 9 8 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 0.97004 * 120.00731 * 239.99865 * 5 2 1 35 35 H 1.09004 * 114.97296 * 291.95070 * 9 8 6 36 36 H 1.09000 * 114.98291 * 67.12247 * 9 8 6 37 37 H 0.96997 * 120.00007 * 241.27741 * 11 10 9 38 38 H 1.09003 * 109.47482 * 299.99262 * 14 12 11 39 39 H 1.09001 * 109.47846 * 59.99748 * 14 12 11 40 40 H 0.97003 * 120.00071 * 180.02562 * 18 17 15 41 41 H 1.08991 * 114.93990 * 293.13530 * 23 8 6 42 42 H 1.09007 * 114.92950 * 68.16402 * 23 8 6 43 43 H 1.08998 * 116.12662 * 290.12612 * 24 10 9 44 44 H 1.09007 * 113.83064 * 154.95730 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 1.6928 -0.2301 -2.4202 7 8 0.9952 0.7557 -2.5315 8 6 2.1955 -0.9401 -3.6508 9 6 3.6547 -1.1985 -4.1016 10 6 2.8291 -1.8646 -5.2614 11 7 3.3076 -2.5399 -6.4701 12 6 4.0703 -3.6465 -6.3668 13 8 4.3608 -4.0827 -5.2731 14 6 4.5629 -4.3408 -7.6102 15 6 5.3877 -5.5408 -7.2221 16 1 5.5404 -5.7768 -6.1793 17 6 5.9485 -6.3369 -8.1983 18 7 5.7631 -6.0493 -9.4681 19 14 6.9703 -7.8247 -7.7171 20 1 7.0263 -7.9291 -6.2369 21 1 6.3511 -9.0527 -8.2772 22 1 8.3465 -7.6748 -8.2548 23 6 1.9537 -0.5987 -5.1371 24 6 1.9540 -2.4021 -4.1020 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 2.5760 -1.4793 -1.1072 35 1 4.2111 -0.3075 -4.3927 36 1 4.2183 -1.8825 -3.4671 37 1 3.0755 -2.1909 -7.3448 38 1 3.7105 -4.6635 -8.2081 39 1 5.1753 -3.6523 -8.1925 40 1 6.1573 -6.6096 -10.1549 41 1 0.9240 -0.7173 -5.4742 42 1 2.4260 0.3220 -5.4798 43 1 2.4114 -3.1612 -3.4675 44 1 0.9287 -2.6303 -4.3934 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:45 Heat of formation + Delta-G solvation = -11.551867 kcal Electronic energy + Delta-G solvation = -23659.864420 eV Core-core repulsion = 20193.470143 eV Total energy + Delta-G solvation = -3466.394277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.17356 -40.74330 -39.85492 -37.40081 -35.08397 -34.59601 -33.01303 -30.92429 -28.25875 -28.19793 -26.91212 -26.84543 -26.59651 -25.52319 -22.41621 -21.09504 -20.57811 -19.71342 -18.52471 -18.33622 -17.53579 -16.93390 -16.54615 -16.26759 -16.06681 -15.94311 -15.30911 -15.23655 -14.98356 -14.88076 -14.54755 -14.17866 -13.96419 -13.45048 -13.39759 -13.07843 -13.01458 -12.80454 -12.77951 -12.57503 -12.46893 -12.43489 -12.22936 -12.12057 -12.03994 -11.97671 -11.54049 -11.42291 -11.40269 -10.79980 -10.62167 -10.44250 -10.13106 -9.94159 -8.24693 -6.31518 1.37300 1.40500 1.41649 1.55819 1.83750 1.88318 2.26576 2.46074 3.11052 3.11342 3.23370 3.36756 3.38737 3.47999 3.65058 3.95652 3.99894 4.13477 4.43225 4.50561 4.58684 4.67616 4.70018 4.72947 4.77479 4.82165 4.86430 4.86862 4.92974 4.94143 4.96405 4.99419 5.09677 5.21235 5.27236 5.33876 5.39694 5.59449 5.62724 5.76096 6.05758 6.52117 6.70165 6.84879 7.18256 7.34392 7.50619 8.87674 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.002848 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.803858 B = 9828.286182 C =10460.352485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 C -0.161 4.161 4 C -0.150 4.150 5 N -0.709 5.709 6 C 0.587 3.413 7 O -0.555 6.555 8 C -0.150 4.150 9 C -0.103 4.103 10 C 0.085 3.915 11 N -0.677 5.677 12 C 0.525 3.475 13 O -0.568 6.568 14 C 0.009 3.991 15 C -0.533 4.533 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.069 4.069 24 C -0.099 4.099 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 13.829 17.452 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 C -0.219 4.219 4 C -0.208 4.208 5 N -0.360 5.360 6 C 0.372 3.628 7 O -0.434 6.434 8 C -0.154 4.154 9 C -0.142 4.142 10 C -0.005 4.005 11 N -0.328 5.328 12 C 0.315 3.685 13 O -0.446 6.446 14 C -0.031 4.031 15 C -0.571 4.571 16 H 0.076 0.924 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.108 4.108 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.246 0.754 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.798 14.142 17.976 24.882 hybrid contribution 0.753 -1.077 -0.656 1.468 sum -9.045 13.065 17.320 23.505 Atomic orbital electron populations 1.22198 0.94403 1.02253 1.03086 1.20561 0.94381 0.92823 0.84510 1.22195 1.01090 0.95562 1.03086 1.22069 1.02061 1.00961 0.95699 1.46116 1.53115 1.32072 1.04726 1.18405 0.78777 0.82663 0.82912 1.90637 1.38802 1.26989 1.86969 1.23259 0.99425 0.98036 0.94715 1.24828 0.93490 0.99888 0.95977 1.23267 0.96137 0.94286 0.86770 1.44773 1.52756 1.27592 1.07715 1.21494 0.75943 0.78991 0.92106 1.90504 1.57907 1.65772 1.30389 1.19083 0.97330 0.95615 0.91043 1.21397 1.31622 1.10602 0.93506 0.92448 1.25783 0.97557 1.00822 0.94784 1.70036 1.46000 1.40382 1.00122 0.85416 0.78492 0.78939 0.78325 1.19790 1.19915 1.19921 1.23907 1.00025 0.95767 0.91057 1.24357 1.00112 0.93523 0.95788 0.92919 0.90089 0.92478 0.90097 0.92468 0.92915 0.91346 0.91335 0.89256 0.75386 0.89618 0.90763 0.74375 0.93825 0.93821 0.92433 0.88930 0.88815 0.90689 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.40 71.98 0.60 -2.05 16 2 C 0.16 2.49 1.06 3.60 0.00 2.49 16 3 C -0.16 -2.65 8.40 71.98 0.60 -2.04 16 4 C -0.15 -1.49 8.59 71.98 0.62 -0.87 16 5 N -0.71 -12.82 5.11 -422.93 -2.16 -14.98 16 6 C 0.59 13.78 7.36 87.66 0.65 14.42 16 7 O -0.56 -15.90 13.31 -3.04 -0.04 -15.94 16 8 C -0.15 -3.51 3.36 -63.68 -0.21 -3.73 16 9 C -0.10 -2.68 7.93 31.91 0.25 -2.42 16 10 C 0.08 2.39 3.92 -6.33 -0.02 2.37 16 11 N -0.68 -22.25 5.71 -470.58 -2.69 -24.94 16 12 C 0.53 23.14 7.82 87.65 0.69 23.83 16 13 O -0.57 -28.42 15.38 -3.03 -0.05 -28.47 16 14 C 0.01 0.44 5.46 29.10 0.16 0.60 16 15 C -0.53 -30.76 8.92 25.60 0.23 -30.54 16 16 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -53.57 13.29 21.45 0.28 -53.28 16 19 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 20 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 C -0.07 -1.56 7.78 30.61 0.24 -1.32 16 24 C -0.10 -2.59 7.76 31.07 0.24 -2.35 16 25 H 0.05 1.17 6.17 -2.39 -0.01 1.15 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.17 6.17 -2.39 -0.01 1.15 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.41 6.24 8.47 -92.71 -0.79 5.46 16 35 H 0.09 2.06 7.91 -2.39 -0.02 2.04 16 36 H 0.07 2.12 7.97 -2.39 -0.02 2.10 16 37 H 0.42 11.29 8.83 -92.71 -0.82 10.47 16 38 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 41 H 0.09 1.91 7.94 -2.39 -0.02 1.89 16 42 H 0.09 1.92 7.91 -2.38 -0.02 1.90 16 43 H 0.07 2.16 7.97 -2.39 -0.02 2.14 16 44 H 0.08 2.04 7.93 -2.38 -0.02 2.02 16 Total: -1.00 -70.32 361.48 1.29 -69.03 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.59 Total: 22.49 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.51 Total: -0.64 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.56 Total: -93.20 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.09 Total: -44.41 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.32 1.29 -69.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.482 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds