Wall clock time and date at job start Tue Mar 31 2020 07:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47019 * 239.99969 * 2 1 3 5 5 N 1.46498 * 109.46966 * 119.99478 * 2 1 3 6 6 C 1.34778 * 119.99751 * 60.00816 * 5 2 1 7 7 O 1.21275 * 120.00049 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99811 * 179.97438 * 6 5 2 9 9 H 1.09002 * 115.56123 * 34.41267 * 8 6 5 10 10 C 1.53150 * 117.51657 * 248.65989 * 8 6 5 11 11 C 1.52325 * 117.51453 * 180.16432 * 8 6 5 12 12 C 1.53293 * 128.81952 * 349.59107 * 11 8 6 13 13 N 1.47731 * 85.85460 * 196.98208 * 12 11 8 14 14 C 1.34768 * 134.39395 * 204.08808 * 13 12 11 15 15 O 1.21282 * 119.99970 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00075 * 0.02562 * 14 13 12 17 17 C 1.50701 * 109.47404 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99764 * 0.02562 * 17 16 14 19 19 C 1.37870 * 120.00413 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00424 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47237 * 59.99382 * 21 19 17 23 23 H 1.48498 * 109.47484 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46611 * 299.99754 * 21 19 17 25 25 C 1.47724 * 91.21251 * 24.09413 * 13 12 11 26 26 H 1.09004 * 109.46999 * 299.99798 * 1 2 3 27 27 H 1.08998 * 109.47381 * 59.99997 * 1 2 3 28 28 H 1.09001 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47155 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46679 * 299.99911 * 3 2 1 31 31 H 1.08996 * 109.47296 * 59.99657 * 3 2 1 32 32 H 1.09001 * 109.47212 * 299.99561 * 4 2 1 33 33 H 1.08998 * 109.47016 * 59.99810 * 4 2 1 34 34 H 1.09001 * 109.46904 * 179.97438 * 4 2 1 35 35 H 0.96997 * 120.00506 * 239.99327 * 5 2 1 36 36 H 1.09004 * 117.51856 * 359.95352 * 10 8 6 37 37 H 1.09002 * 117.52129 * 145.03214 * 10 8 6 38 38 H 1.09001 * 113.80869 * 311.21069 * 12 11 8 39 39 H 1.08998 * 113.81169 * 82.75373 * 12 11 8 40 40 H 1.09000 * 109.47435 * 299.99850 * 16 14 13 41 41 H 1.08998 * 109.47363 * 60.00075 * 16 14 13 42 42 H 0.97000 * 120.00132 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.81059 * 221.67380 * 25 13 12 44 44 H 1.09005 * 113.81461 * 90.13654 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 0.9953 -2.5702 0.6114 8 6 2.1956 -2.6914 2.6397 9 1 2.2813 -2.0767 3.5358 10 6 3.2314 -3.8020 2.4418 11 6 1.7966 -4.1500 2.8224 12 6 0.7662 -4.9700 2.0376 13 7 0.8201 -5.9198 3.1678 14 6 0.5553 -7.2337 3.3086 15 8 0.6913 -7.7673 4.3892 16 6 0.0902 -8.0399 2.1233 17 6 -0.1335 -9.4694 2.5446 18 1 0.0431 -9.7645 3.5684 19 6 -0.5634 -10.4005 1.6232 20 7 -0.7789 -10.0410 0.3766 21 14 -0.8413 -12.1723 2.1455 22 1 -1.8749 -12.2180 3.2109 23 1 -1.2983 -12.9670 0.9773 24 1 0.4291 -12.7405 2.6637 25 6 1.2798 -4.8545 4.0820 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.5761 -0.2192 1.8347 36 1 3.5484 -4.0190 1.4217 37 1 3.9988 -3.9172 3.2072 38 1 -0.1978 -4.4738 1.9253 39 1 1.1487 -5.3775 1.1018 40 1 -0.8424 -7.6226 1.7434 41 1 0.8485 -8.0065 1.3410 42 1 -1.0818 -10.6959 -0.2717 43 1 2.0688 -5.1704 4.7645 44 1 0.4697 -4.3236 4.5820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:58 Heat of formation + Delta-G solvation = -15.404739 kcal Electronic energy + Delta-G solvation = -23679.485976 eV Core-core repulsion = 20212.924626 eV Total energy + Delta-G solvation = -3466.561350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76318 -39.48810 -37.54559 -36.44219 -34.27968 -32.85480 -32.12298 -29.29156 -27.71419 -27.46795 -26.88486 -25.94690 -24.57705 -23.08011 -21.09237 -19.79132 -19.12155 -18.19698 -17.41114 -16.39295 -16.15607 -15.68587 -15.31585 -15.18674 -15.03140 -14.58511 -14.27759 -13.92498 -13.81905 -13.61115 -13.25491 -12.77625 -12.72204 -12.40891 -12.36800 -12.29819 -12.02619 -11.90599 -11.82224 -11.43009 -11.29273 -11.14026 -10.83111 -10.73395 -10.57197 -10.53794 -10.17236 -9.89889 -9.62192 -9.27966 -9.20810 -8.55979 -8.37304 -8.06169 -5.98982 -3.98871 2.37345 2.84531 3.40775 3.41742 3.43480 3.50794 3.61898 3.90140 4.13961 4.43146 4.45879 4.53115 4.60522 4.68070 4.76741 4.88031 5.18946 5.30785 5.32134 5.38577 5.42131 5.49010 5.50566 5.53433 5.60300 5.64665 5.67894 5.70347 5.71425 5.80366 5.94530 6.04874 6.10187 6.15237 6.20957 6.38480 6.74016 7.30192 7.34819 7.42350 8.02448 8.12863 8.20949 8.53388 9.11103 9.28131 9.65514 11.13352 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025477 B = 0.003011 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.765237 B = 9295.510705 C =10013.824545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 C -0.155 4.155 4 C -0.165 4.165 5 N -0.724 5.724 6 C 0.546 3.454 7 O -0.522 6.522 8 C -0.178 4.178 9 H 0.124 0.876 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.164 3.836 13 N -0.656 5.656 14 C 0.541 3.459 15 O -0.546 6.546 16 C 0.014 3.986 17 C -0.509 4.509 18 H 0.074 0.926 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.143 3.857 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.398 0.602 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 26.729 -0.618 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.223 4.223 5 N -0.377 5.377 6 C 0.332 3.668 7 O -0.398 6.398 8 C -0.200 4.200 9 H 0.142 0.858 10 C -0.151 4.151 11 C -0.141 4.141 12 C 0.041 3.959 13 N -0.395 5.395 14 C 0.335 3.665 15 O -0.422 6.422 16 C -0.025 4.025 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.201 1.201 25 C 0.020 3.980 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.232 0.768 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.652 25.669 -0.780 26.796 hybrid contribution 0.111 -0.376 0.480 0.620 sum 7.763 25.292 -0.301 26.459 Atomic orbital electron populations 1.22237 0.94153 1.04341 1.01560 1.20324 0.94492 0.91575 0.85259 1.22087 1.01512 0.94653 1.02971 1.22235 1.00809 1.03073 0.96170 1.46112 1.54172 1.12084 1.25321 1.19635 0.79683 0.81328 0.86132 1.90679 1.36874 1.65933 1.46311 1.22197 1.07288 0.92041 0.98455 0.85783 1.22809 0.91076 0.97524 1.03658 1.22782 0.98119 0.93075 1.00075 1.22375 0.96773 0.85467 0.91264 1.50288 1.69814 1.07012 1.12391 1.21810 0.74114 0.78438 0.92168 1.90536 1.52685 1.69438 1.29586 1.19174 0.97902 0.94714 0.90737 1.21142 1.44495 0.92084 0.97017 0.90788 1.25010 0.95469 0.99307 0.94819 1.69964 1.46729 1.34781 1.02520 0.86478 0.78752 0.83947 0.77791 1.20126 1.21354 1.20132 1.22443 0.97535 0.85965 0.92073 0.92849 0.91992 0.90001 0.92003 0.90891 0.92027 0.90006 0.91999 0.92828 0.76784 0.87707 0.87337 0.89397 0.89761 0.93519 0.93527 0.92866 0.90394 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.40 37.16 0.31 -1.12 16 2 C 0.17 1.27 1.06 -131.82 -0.14 1.13 16 3 C -0.15 -0.76 8.59 37.16 0.32 -0.44 16 4 C -0.16 -1.43 8.40 37.16 0.31 -1.12 16 5 N -0.72 -5.41 5.11 -47.61 -0.24 -5.65 16 6 C 0.55 5.68 7.03 -10.98 -0.08 5.61 16 7 O -0.52 -7.29 11.34 5.56 0.06 -7.22 16 8 C -0.18 -1.64 6.19 -92.04 -0.57 -2.21 16 9 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 10 C -0.11 -1.13 10.24 -26.93 -0.28 -1.41 16 11 C -0.14 -1.76 3.04 -154.94 -0.47 -2.23 16 12 C 0.16 2.67 7.04 -3.22 -0.02 2.65 16 13 N -0.66 -12.79 3.61 -181.71 -0.66 -13.44 16 14 C 0.54 13.48 8.05 -10.99 -0.09 13.40 16 15 O -0.55 -15.27 16.19 5.56 0.09 -15.18 16 16 C 0.01 0.38 5.20 -29.03 -0.15 0.23 16 17 C -0.51 -15.46 8.92 -34.44 -0.31 -15.76 16 18 H 0.07 2.33 6.75 -52.48 -0.35 1.97 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 21 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.10 8.85 -3.22 -0.03 2.07 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.40 1.89 8.47 -40.82 -0.35 1.55 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.41 8.01 -51.93 -0.42 1.00 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -35.83 362.87 -8.08 -43.91 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.23 Total: -1.36 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.29 Total: 2.31 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.16 Total: -45.72 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.15 Total: -22.40 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.83 -8.08 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.506 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds