Wall clock time and date at job start Tue Mar 31 2020 07:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47019 * 239.99969 * 2 1 3 5 5 N 1.46498 * 109.46966 * 119.99478 * 2 1 3 6 6 C 1.34778 * 119.99751 * 60.00816 * 5 2 1 7 7 O 1.21275 * 120.00049 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99811 * 179.97438 * 6 5 2 9 9 H 1.09002 * 115.56123 * 34.41267 * 8 6 5 10 10 C 1.53150 * 117.51657 * 248.65989 * 8 6 5 11 11 C 1.52325 * 117.51453 * 180.16432 * 8 6 5 12 12 C 1.53293 * 128.81952 * 349.59107 * 11 8 6 13 13 N 1.47731 * 85.85460 * 196.98208 * 12 11 8 14 14 C 1.34768 * 134.39395 * 204.08808 * 13 12 11 15 15 O 1.21282 * 119.99970 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00075 * 0.02562 * 14 13 12 17 17 C 1.50701 * 109.47404 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99764 * 0.02562 * 17 16 14 19 19 C 1.37870 * 120.00413 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00424 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47237 * 59.99382 * 21 19 17 23 23 H 1.48498 * 109.47484 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46611 * 299.99754 * 21 19 17 25 25 C 1.47724 * 91.21251 * 24.09413 * 13 12 11 26 26 H 1.09004 * 109.46999 * 299.99798 * 1 2 3 27 27 H 1.08998 * 109.47381 * 59.99997 * 1 2 3 28 28 H 1.09001 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47155 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46679 * 299.99911 * 3 2 1 31 31 H 1.08996 * 109.47296 * 59.99657 * 3 2 1 32 32 H 1.09001 * 109.47212 * 299.99561 * 4 2 1 33 33 H 1.08998 * 109.47016 * 59.99810 * 4 2 1 34 34 H 1.09001 * 109.46904 * 179.97438 * 4 2 1 35 35 H 0.96997 * 120.00506 * 239.99327 * 5 2 1 36 36 H 1.09004 * 117.51856 * 359.95352 * 10 8 6 37 37 H 1.09002 * 117.52129 * 145.03214 * 10 8 6 38 38 H 1.09001 * 113.80869 * 311.21069 * 12 11 8 39 39 H 1.08998 * 113.81169 * 82.75373 * 12 11 8 40 40 H 1.09000 * 109.47435 * 299.99850 * 16 14 13 41 41 H 1.08998 * 109.47363 * 60.00075 * 16 14 13 42 42 H 0.97000 * 120.00132 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.81059 * 221.67380 * 25 13 12 44 44 H 1.09005 * 113.81461 * 90.13654 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 0.9953 -2.5702 0.6114 8 6 2.1956 -2.6914 2.6397 9 1 2.2813 -2.0767 3.5358 10 6 3.2314 -3.8020 2.4418 11 6 1.7966 -4.1500 2.8224 12 6 0.7662 -4.9700 2.0376 13 7 0.8201 -5.9198 3.1678 14 6 0.5553 -7.2337 3.3086 15 8 0.6913 -7.7673 4.3892 16 6 0.0902 -8.0399 2.1233 17 6 -0.1335 -9.4694 2.5446 18 1 0.0431 -9.7645 3.5684 19 6 -0.5634 -10.4005 1.6232 20 7 -0.7789 -10.0410 0.3766 21 14 -0.8413 -12.1723 2.1455 22 1 -1.8749 -12.2180 3.2109 23 1 -1.2983 -12.9670 0.9773 24 1 0.4291 -12.7405 2.6637 25 6 1.2798 -4.8545 4.0820 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.5761 -0.2192 1.8347 36 1 3.5484 -4.0190 1.4217 37 1 3.9988 -3.9172 3.2072 38 1 -0.1978 -4.4738 1.9253 39 1 1.1487 -5.3775 1.1018 40 1 -0.8424 -7.6226 1.7434 41 1 0.8485 -8.0065 1.3410 42 1 -1.0818 -10.6959 -0.2717 43 1 2.0688 -5.1704 4.7645 44 1 0.4697 -4.3236 4.5820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:57 Heat of formation + Delta-G solvation = -40.441597 kcal Electronic energy + Delta-G solvation = -23680.571656 eV Core-core repulsion = 20212.924626 eV Total energy + Delta-G solvation = -3467.647029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78248 -40.67927 -39.10872 -37.36064 -35.45057 -35.14716 -32.86263 -31.38265 -28.60445 -28.20260 -28.16555 -27.27966 -25.47176 -25.10741 -21.91670 -20.52919 -20.42832 -19.54619 -18.64240 -18.20607 -17.59462 -16.97410 -16.89534 -16.48201 -16.13925 -15.91244 -15.32533 -15.07206 -15.02422 -14.76084 -14.45212 -14.26939 -13.94978 -13.62417 -13.30020 -13.24005 -13.02557 -12.99961 -12.98101 -12.79764 -12.60654 -12.51597 -12.07841 -12.05248 -11.96816 -11.84782 -11.65655 -11.49178 -11.19561 -10.66982 -10.51587 -10.42216 -9.99017 -9.65408 -8.28395 -6.38162 1.37180 1.41802 1.49838 1.52579 1.77465 1.92960 2.20240 2.40610 2.82914 3.05854 3.17792 3.42819 3.79467 3.87928 3.96464 4.04813 4.11220 4.19844 4.34792 4.48118 4.54268 4.62490 4.71200 4.74255 4.75348 4.83747 4.86649 4.90044 4.90161 4.93850 4.99526 5.04569 5.05533 5.16843 5.17693 5.26361 5.41188 5.43468 5.68454 5.71311 6.03239 6.66370 6.72510 6.79474 7.28589 7.38883 7.41176 8.84094 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025477 B = 0.003011 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.765237 B = 9295.510705 C =10013.824545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.707 5.707 6 C 0.537 3.463 7 O -0.565 6.565 8 C -0.144 4.144 9 H 0.167 0.833 10 C -0.103 4.103 11 C -0.153 4.153 12 C 0.158 3.842 13 N -0.659 5.659 14 C 0.540 3.460 15 O -0.586 6.586 16 C 0.019 3.981 17 C -0.540 4.540 18 H 0.057 0.943 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.972 3.028 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.269 1.269 25 C 0.146 3.854 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.416 0.584 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.269 0.731 43 H 0.087 0.913 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 29.078 0.347 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.204 4.204 4 C -0.221 4.221 5 N -0.360 5.360 6 C 0.324 3.676 7 O -0.443 6.443 8 C -0.165 4.165 9 H 0.184 0.816 10 C -0.140 4.140 11 C -0.154 4.154 12 C 0.036 3.964 13 N -0.395 5.395 14 C 0.332 3.668 15 O -0.466 6.466 16 C -0.020 4.020 17 C -0.579 4.579 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.194 1.194 25 C 0.025 3.975 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.253 0.747 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.080 28.124 0.175 29.554 hybrid contribution -0.330 -0.957 0.063 1.014 sum 8.750 27.167 0.238 28.542 Atomic orbital electron populations 1.22201 0.95208 1.02265 1.02436 1.20402 0.93732 0.93179 0.84616 1.22034 1.02198 0.92257 1.03955 1.22200 1.01142 1.01266 0.97510 1.45988 1.53422 1.11106 1.25518 1.19943 0.79369 0.82161 0.86135 1.90698 1.38870 1.67051 1.47714 1.22314 1.04500 0.90403 0.99301 0.81564 1.22988 0.90210 0.96746 1.04077 1.22396 0.99538 0.96279 0.97184 1.22460 0.98375 0.85324 0.90204 1.50212 1.67582 1.06277 1.15421 1.21108 0.74591 0.80471 0.90598 1.90490 1.54856 1.71049 1.30222 1.18943 0.96761 0.94599 0.91705 1.21340 1.45950 0.93942 0.96624 0.92432 1.25914 0.94543 1.03977 0.94692 1.70060 1.46580 1.36532 1.03451 0.85404 0.78930 0.78140 0.77975 1.19509 1.19624 1.19423 1.22722 0.98394 0.83941 0.92456 0.92098 0.91032 0.93465 0.90844 0.90222 0.90806 0.93508 0.91034 0.92138 0.74699 0.88564 0.84504 0.89559 0.91658 0.95136 0.95017 0.92257 0.89506 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 8.40 71.98 0.60 -2.09 16 2 C 0.17 2.19 1.06 3.61 0.00 2.19 16 3 C -0.15 -0.94 8.59 71.98 0.62 -0.32 16 4 C -0.16 -2.72 8.40 71.98 0.60 -2.11 16 5 N -0.71 -8.68 5.11 -422.92 -2.16 -10.84 16 6 C 0.54 10.30 7.03 87.66 0.62 10.91 16 7 O -0.56 -16.05 11.34 -3.01 -0.03 -16.09 16 8 C -0.14 -2.18 6.19 -11.71 -0.07 -2.25 16 9 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 10 C -0.10 -1.78 10.24 30.47 0.31 -1.47 16 11 C -0.15 -3.64 3.04 -52.34 -0.16 -3.80 16 12 C 0.16 5.35 7.04 86.24 0.61 5.95 16 13 N -0.66 -26.31 3.61 -847.21 -3.06 -29.37 16 14 C 0.54 28.12 8.05 87.66 0.71 28.83 16 15 O -0.59 -33.95 16.19 -3.04 -0.05 -34.00 16 16 C 0.02 1.12 5.20 29.10 0.15 1.27 16 17 C -0.54 -34.18 8.92 25.60 0.23 -33.95 16 18 H 0.06 3.77 6.75 -2.91 -0.02 3.75 16 19 C 0.01 0.44 5.46 84.65 0.46 0.90 16 20 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 21 Si 0.97 47.32 29.54 68.60 2.03 49.35 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.15 4.07 8.85 86.24 0.76 4.84 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.13 6.17 -2.39 -0.01 1.12 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 1.13 6.17 -2.39 -0.01 1.12 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.42 2.22 8.47 -92.71 -0.79 1.44 16 36 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.92 8.01 -2.39 -0.02 2.90 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 40 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -82.57 362.87 2.66 -79.91 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.21 Total: 9.42 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.45 Total: 8.90 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.93 Total: -97.49 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.08 Total: -50.09 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.57 2.66 -79.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.466 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds