Wall clock time and date at job start Tue Mar 31 2020 07:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47001 * 240.00075 * 2 1 3 5 5 N 1.46499 * 109.46895 * 120.00109 * 2 1 3 6 6 C 1.34772 * 120.00471 * 60.00082 * 5 2 1 7 7 O 1.21284 * 119.99789 * 4.97003 * 6 5 2 8 8 C 1.50694 * 120.00489 * 184.97424 * 6 5 2 9 9 C 1.52869 * 119.43063 * 196.34129 * 8 6 5 10 10 C 1.53117 * 60.43509 * 110.66866 * 9 8 6 11 11 H 1.09003 * 120.25247 * 248.01431 * 10 9 8 12 12 C 1.54706 * 117.55157 * 91.99275 * 10 9 8 13 13 C 1.54585 * 102.77912 * 318.95795 * 12 10 9 14 14 N 1.47388 * 117.17847 * 40.49137 * 8 6 5 15 15 C 1.34773 * 126.94656 * 15.70797 * 14 8 6 16 16 O 1.21280 * 119.99977 * 355.63196 * 15 14 8 17 17 C 1.50705 * 120.00104 * 175.62869 * 15 14 8 18 18 C 1.50692 * 109.47083 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00166 * 359.72615 * 18 17 15 20 20 C 1.37879 * 120.00226 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00446 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46822 * 90.00511 * 22 20 18 24 24 H 1.48500 * 109.47194 * 210.00119 * 22 20 18 25 25 H 1.48490 * 109.47166 * 330.00570 * 22 20 18 26 26 H 1.08996 * 109.47108 * 300.00284 * 1 2 3 27 27 H 1.09005 * 109.46856 * 59.99821 * 1 2 3 28 28 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46931 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46792 * 299.99801 * 3 2 1 31 31 H 1.08998 * 109.46933 * 59.99641 * 3 2 1 32 32 H 1.09002 * 109.47113 * 299.99843 * 4 2 1 33 33 H 1.08998 * 109.47571 * 59.99755 * 4 2 1 34 34 H 1.09003 * 109.46713 * 180.02562 * 4 2 1 35 35 H 0.97002 * 119.99641 * 240.00116 * 5 2 1 36 36 H 1.08999 * 117.45500 * 218.28281 * 9 8 6 37 37 H 1.09003 * 117.45291 * 3.05010 * 9 8 6 38 38 H 1.08997 * 110.76938 * 77.42136 * 12 10 9 39 39 H 1.09001 * 110.76150 * 200.63362 * 12 10 9 40 40 H 1.09005 * 110.61777 * 204.19221 * 13 12 10 41 41 H 1.09000 * 110.53923 * 81.19457 * 13 12 10 42 42 H 1.08998 * 109.46697 * 60.00091 * 17 15 14 43 43 H 1.09003 * 109.46636 * 300.00279 * 17 15 14 44 44 H 0.97000 * 120.00199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 1.0719 -2.5966 0.5690 8 6 2.1001 -2.6587 2.6923 9 6 2.0691 -4.1847 2.7783 10 6 3.4152 -3.4550 2.7813 11 1 4.0944 -3.5523 1.9343 12 6 4.0217 -3.0779 4.1536 13 6 2.7893 -2.5912 4.9499 14 7 1.9845 -1.8739 3.9345 15 6 1.2914 -0.7314 4.1093 16 8 0.7418 -0.2050 3.1650 17 6 1.1993 -0.1079 5.4783 18 6 0.3745 1.1510 5.4024 19 1 -0.0377 1.4703 4.4566 20 6 0.1503 1.8979 6.5394 21 7 0.6567 1.5119 7.6902 22 14 -0.8715 3.4589 6.4453 23 1 -2.3004 3.1299 6.6799 24 1 -0.4078 4.4172 7.4805 25 1 -0.7186 4.0702 5.1007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 2.5760 -0.2192 1.8347 36 1 1.7359 -4.6285 3.7164 37 1 1.7968 -4.7334 1.8766 38 1 4.4722 -3.9488 4.6296 39 1 4.7528 -2.2767 4.0459 40 1 3.0916 -1.9144 5.7492 41 1 2.2344 -3.4390 5.3517 42 1 2.2003 0.1340 5.8354 43 1 0.7278 -0.8099 6.1661 44 1 0.4994 2.0375 8.4901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:49 Heat of formation + Delta-G solvation = -33.226578 kcal Electronic energy + Delta-G solvation = -25482.960599 eV Core-core repulsion = 22015.626436 eV Total energy + Delta-G solvation = -3467.334163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88052 -38.92896 -37.65143 -36.00132 -33.07113 -32.54039 -31.67460 -29.95914 -28.82706 -27.16736 -26.93134 -24.42683 -24.24315 -23.05661 -20.96466 -19.96832 -19.34180 -18.61351 -17.03054 -16.22266 -15.81182 -15.61272 -15.31009 -14.67032 -14.53719 -14.44517 -14.09673 -13.67398 -13.50795 -13.30216 -13.06426 -12.77185 -12.41040 -12.22562 -12.07598 -11.96676 -11.83113 -11.74065 -11.36771 -11.29689 -11.08251 -10.88951 -10.83440 -10.78693 -10.72097 -10.53862 -10.26460 -10.01326 -9.33277 -9.23477 -8.93002 -8.50079 -8.36954 -8.10863 -6.12493 -4.12318 2.59561 3.30281 3.35633 3.37998 3.44678 3.46646 3.49981 3.89711 4.42224 4.50695 4.64761 4.87573 4.93776 5.04668 5.13345 5.19987 5.26305 5.33136 5.43355 5.64742 5.68267 5.69299 5.77859 5.85221 5.89155 5.90295 5.93875 6.04011 6.07599 6.10795 6.14011 6.23407 6.30760 6.51133 6.65223 6.79326 6.99293 7.10024 7.23330 7.88420 7.90492 7.99845 8.27695 8.60936 8.97584 9.06872 9.52987 10.99758 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.006200 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.424842 B = 4514.961368 C = 6089.131607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 C -0.154 4.154 4 C -0.163 4.163 5 N -0.686 5.686 6 C 0.576 3.424 7 O -0.548 6.548 8 C 0.054 3.946 9 C -0.127 4.127 10 C -0.161 4.161 11 H 0.120 0.880 12 C -0.105 4.105 13 C 0.099 3.901 14 N -0.601 5.601 15 C 0.526 3.474 16 O -0.520 6.520 17 C 0.016 3.984 18 C -0.508 4.508 19 H 0.075 0.925 20 C 0.056 3.944 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.400 0.600 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 -8.093 -9.858 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 C -0.211 4.211 4 C -0.221 4.221 5 N -0.335 5.335 6 C 0.361 3.639 7 O -0.426 6.426 8 C -0.036 4.036 9 C -0.166 4.166 10 C -0.181 4.181 11 H 0.138 0.862 12 C -0.143 4.143 13 C -0.024 4.024 14 N -0.338 5.338 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.023 4.023 18 C -0.546 4.546 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.539 5.539 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.197 1.197 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.235 0.765 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.651 -7.958 -10.767 15.420 hybrid contribution -0.269 1.000 0.630 1.213 sum 7.382 -6.958 -10.136 14.340 Atomic orbital electron populations 1.22119 0.94188 1.03389 1.01783 1.20206 0.94753 0.91501 0.84562 1.22056 1.00885 0.94982 1.03200 1.22272 1.00378 1.02903 0.96517 1.45789 1.52299 1.11043 1.24412 1.18712 0.78211 0.81777 0.85204 1.90581 1.41023 1.65315 1.45679 1.21504 1.04177 0.90714 0.87205 1.23268 0.97073 0.91775 1.04479 1.23771 0.90319 1.03999 1.00040 0.86221 1.22267 0.97420 1.01356 0.93296 1.22452 0.90844 0.97027 0.92101 1.48860 1.51658 1.24207 1.09106 1.22064 0.75154 0.77018 0.93825 1.90619 1.44740 1.60935 1.43023 1.19212 0.99476 0.96795 0.86859 1.21136 1.31637 1.06317 0.95553 0.90641 1.24990 0.96035 0.98220 0.95226 1.69952 1.45277 1.39520 0.99172 0.86437 0.80302 0.82578 0.77817 1.20618 1.21261 1.19708 0.91235 0.92989 0.91278 0.92567 0.91395 0.91128 0.90246 0.92376 0.93271 0.76487 0.87914 0.86694 0.89695 0.90028 0.88642 0.91156 0.93559 0.93493 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.40 37.16 0.31 -2.34 16 2 C 0.18 2.68 1.06 -131.82 -0.14 2.54 16 3 C -0.15 -2.04 8.59 37.16 0.32 -1.72 16 4 C -0.16 -2.21 8.40 37.16 0.31 -1.90 16 5 N -0.69 -11.51 3.17 -47.61 -0.15 -11.67 16 6 C 0.58 10.27 5.95 -10.99 -0.07 10.21 16 7 O -0.55 -10.70 12.83 5.55 0.07 -10.63 16 8 C 0.05 0.86 3.28 -132.03 -0.43 0.43 16 9 C -0.13 -1.63 9.43 -26.74 -0.25 -1.88 16 10 C -0.16 -1.89 7.06 -89.14 -0.63 -2.52 16 11 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 12 C -0.11 -1.09 7.00 -25.00 -0.17 -1.27 16 13 C 0.10 1.31 6.43 -2.33 -0.01 1.29 16 14 N -0.60 -10.34 3.27 -156.73 -0.51 -10.85 16 15 C 0.53 11.37 7.41 -10.98 -0.08 11.29 16 16 O -0.52 -12.25 11.75 5.56 0.07 -12.18 16 17 C 0.02 0.38 4.48 -29.04 -0.13 0.25 16 18 C -0.51 -14.12 8.92 -34.44 -0.31 -14.43 16 19 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.07 1.35 7.76 -51.93 -0.40 0.95 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.31 6.34 -51.93 -0.33 0.98 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.24 6.01 -51.93 -0.31 0.93 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 6.80 7.33 -40.82 -0.30 6.50 16 36 H 0.10 1.20 7.16 -51.93 -0.37 0.83 16 37 H 0.11 1.46 7.93 -51.93 -0.41 1.05 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.29 7.22 -51.93 -0.37 0.92 16 41 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 42 H 0.05 1.13 7.78 -51.93 -0.40 0.72 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -31.53 348.35 -7.95 -39.48 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.00 Total: 7.41 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.38 Total: 1.42 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.07 Total: -47.40 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.14 Total: -22.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.53 -7.95 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.250 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds