Wall clock time and date at job start Tue Mar 31 2020 07:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47001 * 240.00075 * 2 1 3 5 5 N 1.46499 * 109.46895 * 120.00109 * 2 1 3 6 6 C 1.34772 * 120.00471 * 60.00082 * 5 2 1 7 7 O 1.21284 * 119.99789 * 4.97003 * 6 5 2 8 8 C 1.50694 * 120.00489 * 184.97424 * 6 5 2 9 9 C 1.52869 * 119.43063 * 196.34129 * 8 6 5 10 10 C 1.53117 * 60.43509 * 110.66866 * 9 8 6 11 11 H 1.09003 * 120.25247 * 248.01431 * 10 9 8 12 12 C 1.54706 * 117.55157 * 91.99275 * 10 9 8 13 13 C 1.54585 * 102.77912 * 318.95795 * 12 10 9 14 14 N 1.47388 * 117.17847 * 40.49137 * 8 6 5 15 15 C 1.34773 * 126.94656 * 15.70797 * 14 8 6 16 16 O 1.21280 * 119.99977 * 355.63196 * 15 14 8 17 17 C 1.50705 * 120.00104 * 175.62869 * 15 14 8 18 18 C 1.50692 * 109.47083 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00166 * 359.72615 * 18 17 15 20 20 C 1.37879 * 120.00226 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00446 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46822 * 90.00511 * 22 20 18 24 24 H 1.48500 * 109.47194 * 210.00119 * 22 20 18 25 25 H 1.48490 * 109.47166 * 330.00570 * 22 20 18 26 26 H 1.08996 * 109.47108 * 300.00284 * 1 2 3 27 27 H 1.09005 * 109.46856 * 59.99821 * 1 2 3 28 28 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46931 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46792 * 299.99801 * 3 2 1 31 31 H 1.08998 * 109.46933 * 59.99641 * 3 2 1 32 32 H 1.09002 * 109.47113 * 299.99843 * 4 2 1 33 33 H 1.08998 * 109.47571 * 59.99755 * 4 2 1 34 34 H 1.09003 * 109.46713 * 180.02562 * 4 2 1 35 35 H 0.97002 * 119.99641 * 240.00116 * 5 2 1 36 36 H 1.08999 * 117.45500 * 218.28281 * 9 8 6 37 37 H 1.09003 * 117.45291 * 3.05010 * 9 8 6 38 38 H 1.08997 * 110.76938 * 77.42136 * 12 10 9 39 39 H 1.09001 * 110.76150 * 200.63362 * 12 10 9 40 40 H 1.09005 * 110.61777 * 204.19221 * 13 12 10 41 41 H 1.09000 * 110.53923 * 81.19457 * 13 12 10 42 42 H 1.08998 * 109.46697 * 60.00091 * 17 15 14 43 43 H 1.09003 * 109.46636 * 300.00279 * 17 15 14 44 44 H 0.97000 * 120.00199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 1.0719 -2.5966 0.5690 8 6 2.1001 -2.6587 2.6923 9 6 2.0691 -4.1847 2.7783 10 6 3.4152 -3.4550 2.7813 11 1 4.0944 -3.5523 1.9343 12 6 4.0217 -3.0779 4.1536 13 6 2.7893 -2.5912 4.9499 14 7 1.9845 -1.8739 3.9345 15 6 1.2914 -0.7314 4.1093 16 8 0.7418 -0.2050 3.1650 17 6 1.1993 -0.1079 5.4783 18 6 0.3745 1.1510 5.4024 19 1 -0.0377 1.4703 4.4566 20 6 0.1503 1.8979 6.5394 21 7 0.6567 1.5119 7.6902 22 14 -0.8715 3.4589 6.4453 23 1 -2.3004 3.1299 6.6799 24 1 -0.4078 4.4172 7.4805 25 1 -0.7186 4.0702 5.1007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 2.5760 -0.2192 1.8347 36 1 1.7359 -4.6285 3.7164 37 1 1.7968 -4.7334 1.8766 38 1 4.4722 -3.9488 4.6296 39 1 4.7528 -2.2767 4.0459 40 1 3.0916 -1.9144 5.7492 41 1 2.2344 -3.4390 5.3517 42 1 2.2003 0.1340 5.8354 43 1 0.7278 -0.8099 6.1661 44 1 0.4994 2.0375 8.4901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:48 Heat of formation + Delta-G solvation = -52.984569 kcal Electronic energy + Delta-G solvation = -25483.817370 eV Core-core repulsion = 22015.626436 eV Total energy + Delta-G solvation = -3468.190933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.12857 -40.23558 -39.19024 -37.29572 -35.12703 -33.92556 -32.95953 -31.08896 -30.73866 -28.29085 -28.18664 -26.16001 -25.38507 -24.52114 -22.32750 -21.03966 -20.60692 -19.93908 -18.67425 -18.16619 -17.22077 -16.89592 -16.61713 -16.45624 -15.94035 -15.72003 -15.53278 -14.99104 -14.93853 -14.54826 -14.31930 -14.15757 -13.80388 -13.74656 -13.32109 -13.16913 -13.04738 -13.00941 -12.88724 -12.80660 -12.61471 -12.58797 -12.10586 -12.09333 -12.06076 -11.97676 -11.60897 -11.42316 -11.41419 -10.63801 -10.55651 -10.50296 -9.76566 -9.41452 -8.26570 -6.32799 1.30235 1.37982 1.38847 1.50685 1.84564 2.07164 2.27155 2.41635 2.76175 3.09392 3.41400 3.54441 3.72083 3.92860 3.95740 4.01716 4.10619 4.15467 4.28377 4.44042 4.65659 4.65763 4.68283 4.73547 4.77326 4.83465 4.84857 4.92121 4.96474 5.01193 5.06652 5.12453 5.15534 5.19314 5.24683 5.29493 5.42301 5.43188 5.71462 5.73906 6.05021 6.56207 6.67164 6.81222 7.27046 7.34052 7.46001 8.85481 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.006200 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.424842 B = 4514.961368 C = 6089.131607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.165 3.835 3 C -0.146 4.146 4 C -0.151 4.151 5 N -0.685 5.685 6 C 0.565 3.435 7 O -0.574 6.574 8 C 0.007 3.993 9 C -0.117 4.117 10 C -0.122 4.122 11 H 0.140 0.860 12 C -0.093 4.093 13 C 0.088 3.912 14 N -0.596 5.596 15 C 0.526 3.474 16 O -0.550 6.550 17 C 0.025 3.975 18 C -0.530 4.530 19 H 0.056 0.944 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.266 -8.754 -10.394 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.080 3.920 3 C -0.203 4.203 4 C -0.209 4.209 5 N -0.333 5.333 6 C 0.352 3.648 7 O -0.455 6.455 8 C -0.082 4.082 9 C -0.156 4.156 10 C -0.141 4.141 11 H 0.157 0.843 12 C -0.130 4.130 13 C -0.034 4.034 14 N -0.332 5.332 15 C 0.317 3.683 16 O -0.427 6.427 17 C -0.014 4.014 18 C -0.568 4.568 19 H 0.074 0.926 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.198 1.198 25 H -0.199 1.199 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.463 -8.658 -11.288 17.086 hybrid contribution -0.815 1.140 0.806 1.617 sum 8.648 -7.518 -10.482 15.530 Atomic orbital electron populations 1.22030 0.95880 1.01436 1.01297 1.20437 0.93543 0.92978 0.85050 1.21998 1.01919 0.93367 1.03011 1.22146 1.01129 1.01418 0.96201 1.45881 1.51866 1.10901 1.24642 1.19138 0.77879 0.82031 0.85790 1.90558 1.42163 1.65907 1.46850 1.21736 1.09129 0.91876 0.85493 1.23378 0.97749 0.89198 1.05236 1.23968 0.89080 0.99711 1.01368 0.84275 1.22321 0.95903 1.02964 0.91828 1.22791 0.91918 0.96973 0.91677 1.48558 1.50500 1.23152 1.10944 1.21378 0.75997 0.78539 0.92351 1.90608 1.46382 1.62401 1.43280 1.18946 0.98379 0.95551 0.88562 1.21328 1.32504 1.08044 0.94959 0.92619 1.25708 0.96965 1.01008 0.94874 1.70020 1.45996 1.40624 0.99620 0.85533 0.78870 0.79265 0.77884 1.20216 1.19849 1.19872 0.94673 0.90362 0.93844 0.90812 0.89089 0.93750 0.92504 0.90213 0.91869 0.76879 0.86547 0.86633 0.85883 0.89276 0.89295 0.89669 0.93982 0.94968 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 8.40 71.98 0.60 -4.58 16 2 C 0.17 5.04 1.06 3.61 0.00 5.05 16 3 C -0.15 -3.75 8.59 71.98 0.62 -3.13 16 4 C -0.15 -3.91 8.40 71.98 0.60 -3.31 16 5 N -0.68 -23.34 3.17 -422.92 -1.34 -24.68 16 6 C 0.57 20.37 5.95 87.66 0.52 20.89 16 7 O -0.57 -22.90 12.83 -3.04 -0.04 -22.94 16 8 C 0.01 0.22 3.28 2.98 0.01 0.23 16 9 C -0.12 -2.74 9.43 30.59 0.29 -2.45 16 10 C -0.12 -2.46 7.06 -9.84 -0.07 -2.53 16 11 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 12 C -0.09 -1.56 7.00 31.72 0.22 -1.34 16 13 C 0.09 2.17 6.43 86.61 0.56 2.73 16 14 N -0.60 -20.39 3.27 -768.17 -2.51 -22.91 16 15 C 0.53 23.48 7.41 87.66 0.65 24.13 16 16 O -0.55 -27.23 11.75 -3.03 -0.04 -27.26 16 17 C 0.02 1.26 4.48 29.10 0.13 1.39 16 18 C -0.53 -30.47 8.92 25.60 0.23 -30.24 16 19 H 0.06 3.37 6.75 -2.91 -0.02 3.35 16 20 C 0.01 0.75 5.46 84.65 0.46 1.21 16 21 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 22 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 H 0.03 1.44 7.76 -2.39 -0.02 1.42 16 27 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.04 1.71 6.34 -2.39 -0.02 1.70 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.76 6.01 -2.39 -0.01 1.74 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.40 13.77 7.33 -92.71 -0.68 13.09 16 36 H 0.12 2.40 7.16 -2.39 -0.02 2.38 16 37 H 0.12 2.73 7.93 -2.39 -0.02 2.71 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 2.33 7.22 -2.38 -0.02 2.31 16 41 H 0.09 1.87 7.30 -2.39 -0.02 1.85 16 42 H 0.04 2.11 7.78 -2.39 -0.02 2.09 16 43 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.46 348.35 3.53 -67.93 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.32 Total: 27.59 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 4.83 Total: 8.04 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.57 Total: -100.32 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.07 Total: -50.20 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.46 3.53 -67.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.944 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds