Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 6 6 C 1.34778 * 119.99620 * 59.99948 * 5 2 1 7 7 O 1.21277 * 120.00059 * 0.02562 * 6 5 2 8 8 C 1.50701 * 119.99951 * 180.02562 * 6 5 2 9 9 C 1.53062 * 119.24936 * 225.23291 * 8 6 5 10 10 C 1.52933 * 60.43199 * 248.82352 * 9 8 6 11 11 H 1.08999 * 119.50960 * 111.75118 * 10 9 8 12 12 C 1.54586 * 118.19685 * 268.38238 * 10 9 8 13 13 C 1.54941 * 102.85831 * 85.43098 * 12 10 9 14 14 N 1.47532 * 117.36895 * 19.16775 * 8 6 5 15 15 C 1.34780 * 127.04274 * 295.06752 * 14 8 6 16 16 O 1.21273 * 120.00428 * 359.97438 * 15 14 8 17 17 C 1.50703 * 119.99600 * 180.02562 * 15 14 8 18 18 C 1.50701 * 109.46869 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00192 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00032 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00097 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46846 * 59.99833 * 22 20 18 24 24 H 1.48501 * 109.47117 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47266 * 299.99856 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 0.96994 * 119.99907 * 240.00027 * 5 2 1 36 36 H 1.08999 * 117.45128 * 356.43681 * 9 8 6 37 37 H 1.09006 * 117.45413 * 141.23747 * 9 8 6 38 38 H 1.08996 * 110.73311 * 203.77315 * 12 10 9 39 39 H 1.08995 * 110.73269 * 326.90666 * 12 10 9 40 40 H 1.08997 * 110.66183 * 81.00974 * 13 12 10 41 41 H 1.09007 * 110.65958 * 203.96359 * 13 12 10 42 42 H 1.09001 * 109.46692 * 299.98894 * 17 15 14 43 43 H 1.08999 * 109.47772 * 59.99352 * 17 15 14 44 44 H 0.96995 * 119.99846 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 2.0184 -0.6907 -1.1961 6 6 1.6928 -0.2302 -2.4202 7 8 0.9959 0.7561 -2.5315 8 6 2.1947 -0.9410 -3.6507 9 6 2.7750 -0.1195 -4.8045 10 6 1.4419 -0.8456 -4.9907 11 1 0.5246 -0.2659 -5.0935 12 6 1.4657 -2.2801 -5.5663 13 6 1.7000 -3.1528 -4.3077 14 7 2.6524 -2.3342 -3.4898 15 6 3.7091 -2.7640 -2.7720 16 8 4.3980 -1.9674 -2.1706 17 6 4.0352 -4.2343 -2.7175 18 6 5.2530 -4.4471 -1.8557 19 1 5.7422 -3.6022 -1.3940 20 6 5.7427 -5.7205 -1.6567 21 7 5.1467 -6.7495 -2.2186 22 14 7.2527 -5.9843 -0.5891 23 1 6.9818 -5.4855 0.7832 24 1 7.5732 -7.4333 -0.5343 25 1 8.4029 -5.2439 -1.1668 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 2.5760 -1.4793 -1.1070 36 1 2.7472 0.9662 -4.7120 37 1 3.6442 -0.5248 -5.3226 38 1 0.5115 -2.5244 -6.0332 39 1 2.2830 -2.3968 -6.2779 40 1 0.7655 -3.3093 -3.7688 41 1 2.1501 -4.1075 -4.5800 42 1 3.1907 -4.7782 -2.2944 43 1 4.2349 -4.5998 -3.7248 44 1 5.4910 -7.6454 -2.0783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = -43.912716 kcal Electronic energy + Delta-G solvation = -25220.901635 eV Core-core repulsion = 21753.104087 eV Total energy + Delta-G solvation = -3467.797548 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80475 -38.97505 -37.67128 -36.08367 -33.10219 -32.64737 -31.83600 -30.07888 -28.85177 -27.27641 -27.16156 -24.68299 -23.46862 -23.24743 -21.28112 -19.97238 -19.46612 -18.79623 -17.01388 -16.36295 -15.92033 -15.58133 -15.38164 -14.76406 -14.60872 -14.25087 -14.12429 -13.90509 -13.51726 -13.43347 -13.20401 -12.77235 -12.43485 -12.28931 -12.13303 -12.05837 -12.00065 -11.74544 -11.52755 -11.29782 -11.13877 -11.05733 -10.93071 -10.86531 -10.71182 -10.54813 -10.18956 -10.03322 -9.46064 -9.35610 -8.85742 -8.78798 -8.51407 -8.26708 -6.13898 -4.14350 2.60540 3.18172 3.30248 3.31858 3.34742 3.40859 3.46278 3.78273 4.40774 4.55616 4.60827 4.78933 4.94989 5.03674 5.13800 5.15887 5.19831 5.24572 5.33219 5.60974 5.61624 5.68845 5.69702 5.77416 5.82702 5.84342 5.87858 5.88729 5.92959 5.98396 6.02504 6.15984 6.25299 6.35587 6.44282 6.59042 6.83122 7.07584 7.20005 7.83108 7.87974 7.91308 8.23968 8.46355 8.94628 9.00713 9.51145 10.98177 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.005648 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.196945 B = 4955.998864 C = 6316.302198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.162 4.162 4 C -0.156 4.156 5 N -0.706 5.706 6 C 0.564 3.436 7 O -0.550 6.550 8 C 0.042 3.958 9 C -0.122 4.122 10 C -0.125 4.125 11 H 0.128 0.872 12 C -0.108 4.108 13 C 0.107 3.893 14 N -0.609 5.609 15 C 0.532 3.468 16 O -0.533 6.533 17 C 0.014 3.986 18 C -0.512 4.512 19 H 0.075 0.925 20 C 0.057 3.943 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.410 0.590 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 9.787 -2.387 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.081 3.919 3 C -0.220 4.220 4 C -0.214 4.214 5 N -0.360 5.360 6 C 0.350 3.650 7 O -0.429 6.429 8 C -0.049 4.049 9 C -0.161 4.161 10 C -0.144 4.144 11 H 0.146 0.854 12 C -0.146 4.146 13 C -0.015 4.015 14 N -0.347 5.347 15 C 0.325 3.675 16 O -0.408 6.408 17 C -0.025 4.025 18 C -0.551 4.551 19 H 0.093 0.907 20 C -0.144 4.144 21 N -0.538 5.538 22 Si 0.730 3.270 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.249 0.751 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.476 10.613 -1.993 15.046 hybrid contribution 1.083 -0.733 0.609 1.442 sum -9.394 9.881 -1.384 13.703 Atomic orbital electron populations 1.22211 0.94492 1.02065 1.03136 1.20333 0.94121 0.92752 0.84719 1.22205 1.01248 0.95523 1.02977 1.22085 1.02315 1.00761 0.96242 1.46272 1.52718 1.32351 1.04643 1.19272 0.78876 0.83309 0.83558 1.90588 1.39040 1.26525 1.86743 1.21555 1.06015 0.87810 0.89478 1.23382 0.96437 0.99057 0.97229 1.23671 0.97637 0.98228 0.94858 0.85434 1.22442 1.03098 0.91662 0.97412 1.22938 0.92958 0.95495 0.90114 1.49386 1.29893 1.03966 1.51486 1.22075 0.76147 0.93773 0.75490 1.90573 1.48356 1.57512 1.44328 1.19232 0.99045 0.84404 0.99827 1.21103 1.10914 0.93404 1.29633 0.90668 1.24988 0.97483 0.95845 0.96065 1.69940 1.40721 0.98944 1.44208 0.86486 0.82897 0.76763 0.80899 1.20106 1.21303 1.20097 0.92822 0.90452 0.92109 0.92203 0.92580 0.90505 0.91854 0.91491 0.91088 0.75116 0.87264 0.87816 0.89420 0.90133 0.90990 0.88756 0.93377 0.93327 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.40 37.16 0.31 -1.82 16 2 C 0.17 2.41 1.06 -131.82 -0.14 2.27 16 3 C -0.16 -2.26 8.40 37.16 0.31 -1.95 16 4 C -0.16 -2.05 8.59 37.16 0.32 -1.73 16 5 N -0.71 -12.08 4.98 -47.61 -0.24 -12.32 16 6 C 0.56 9.77 7.08 -10.98 -0.08 9.69 16 7 O -0.55 -9.85 13.06 5.56 0.07 -9.78 16 8 C 0.04 0.67 2.46 -131.85 -0.32 0.35 16 9 C -0.12 -1.71 9.96 -26.73 -0.27 -1.97 16 10 C -0.12 -1.55 6.76 -89.30 -0.60 -2.16 16 11 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 12 C -0.11 -1.17 6.86 -24.87 -0.17 -1.34 16 13 C 0.11 1.44 7.03 -1.14 -0.01 1.43 16 14 N -0.61 -10.55 3.07 -154.84 -0.48 -11.03 16 15 C 0.53 11.52 6.75 -10.98 -0.07 11.44 16 16 O -0.53 -12.92 14.25 5.56 0.08 -12.85 16 17 C 0.01 0.34 4.48 -29.03 -0.13 0.21 16 18 C -0.51 -14.19 8.92 -34.44 -0.31 -14.50 16 19 H 0.08 2.17 6.75 -52.49 -0.35 1.81 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -25.40 13.29 55.43 0.74 -24.67 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 7.77 5.23 -40.82 -0.21 7.56 16 36 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.28 7.38 -51.93 -0.38 0.89 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.20 7.96 -51.93 -0.41 0.78 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -31.13 353.68 -7.83 -38.96 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.06 Total: 8.43 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.26 Total: 1.43 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.02 Total: -48.01 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.15 Total: -22.63 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.13 -7.83 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.952 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds