Wall clock time and date at job start Tue Mar 31 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 6 6 C 1.34778 * 119.99620 * 59.99948 * 5 2 1 7 7 O 1.21277 * 120.00059 * 0.02562 * 6 5 2 8 8 C 1.50701 * 119.99951 * 180.02562 * 6 5 2 9 9 C 1.53062 * 119.24936 * 225.23291 * 8 6 5 10 10 C 1.52933 * 60.43199 * 248.82352 * 9 8 6 11 11 H 1.08999 * 119.50960 * 111.75118 * 10 9 8 12 12 C 1.54586 * 118.19685 * 268.38238 * 10 9 8 13 13 C 1.54941 * 102.85831 * 85.43098 * 12 10 9 14 14 N 1.47532 * 117.36895 * 19.16775 * 8 6 5 15 15 C 1.34780 * 127.04274 * 295.06752 * 14 8 6 16 16 O 1.21273 * 120.00428 * 359.97438 * 15 14 8 17 17 C 1.50703 * 119.99600 * 180.02562 * 15 14 8 18 18 C 1.50701 * 109.46869 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00192 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00032 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00097 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46846 * 59.99833 * 22 20 18 24 24 H 1.48501 * 109.47117 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47266 * 299.99856 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 0.96994 * 119.99907 * 240.00027 * 5 2 1 36 36 H 1.08999 * 117.45128 * 356.43681 * 9 8 6 37 37 H 1.09006 * 117.45413 * 141.23747 * 9 8 6 38 38 H 1.08996 * 110.73311 * 203.77315 * 12 10 9 39 39 H 1.08995 * 110.73269 * 326.90666 * 12 10 9 40 40 H 1.08997 * 110.66183 * 81.00974 * 13 12 10 41 41 H 1.09007 * 110.65958 * 203.96359 * 13 12 10 42 42 H 1.09001 * 109.46692 * 299.98894 * 17 15 14 43 43 H 1.08999 * 109.47772 * 59.99352 * 17 15 14 44 44 H 0.96995 * 119.99846 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 2.0184 -0.6907 -1.1961 6 6 1.6928 -0.2302 -2.4202 7 8 0.9959 0.7561 -2.5315 8 6 2.1947 -0.9410 -3.6507 9 6 2.7750 -0.1195 -4.8045 10 6 1.4419 -0.8456 -4.9907 11 1 0.5246 -0.2659 -5.0935 12 6 1.4657 -2.2801 -5.5663 13 6 1.7000 -3.1528 -4.3077 14 7 2.6524 -2.3342 -3.4898 15 6 3.7091 -2.7640 -2.7720 16 8 4.3980 -1.9674 -2.1706 17 6 4.0352 -4.2343 -2.7175 18 6 5.2530 -4.4471 -1.8557 19 1 5.7422 -3.6022 -1.3940 20 6 5.7427 -5.7205 -1.6567 21 7 5.1467 -6.7495 -2.2186 22 14 7.2527 -5.9843 -0.5891 23 1 6.9818 -5.4855 0.7832 24 1 7.5732 -7.4333 -0.5343 25 1 8.4029 -5.2439 -1.1668 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 2.5760 -1.4793 -1.1070 36 1 2.7472 0.9662 -4.7120 37 1 3.6442 -0.5248 -5.3226 38 1 0.5115 -2.5244 -6.0332 39 1 2.2830 -2.3968 -6.2779 40 1 0.7655 -3.3093 -3.7688 41 1 2.1501 -4.1075 -4.5800 42 1 3.1907 -4.7782 -2.2944 43 1 4.2349 -4.5998 -3.7248 44 1 5.4910 -7.6454 -2.0783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:51 Heat of formation + Delta-G solvation = -63.343756 kcal Electronic energy + Delta-G solvation = -25221.744228 eV Core-core repulsion = 21753.104087 eV Total energy + Delta-G solvation = -3468.640141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07721 -40.30238 -39.18227 -37.32991 -35.13577 -34.05128 -33.07822 -31.28638 -30.73897 -28.35221 -28.25391 -26.34766 -24.93418 -24.52292 -22.54646 -21.16432 -20.69721 -20.12955 -18.68019 -18.20304 -17.23481 -17.11885 -16.68634 -16.38465 -15.88208 -15.74596 -15.70352 -15.08178 -14.86599 -14.60695 -14.36760 -14.16264 -14.02743 -13.59866 -13.42163 -13.21947 -13.10490 -13.03504 -12.93590 -12.74466 -12.64303 -12.59120 -12.23117 -12.19618 -12.05915 -11.98761 -11.61038 -11.50806 -11.36526 -10.67126 -10.63056 -10.55518 -10.08085 -9.64834 -8.25914 -6.32960 1.34629 1.40295 1.41881 1.50301 1.74149 1.84342 2.11944 2.41587 2.60587 3.09866 3.45643 3.47921 3.64661 3.81912 3.92200 3.99291 4.07469 4.15668 4.25109 4.34187 4.54421 4.59586 4.64333 4.67882 4.71810 4.74569 4.77249 4.84384 4.89010 4.91003 5.00690 5.04993 5.08880 5.19030 5.22545 5.26747 5.33199 5.37162 5.60805 5.72864 6.03346 6.48617 6.54439 6.80015 7.11808 7.31310 7.40061 8.85753 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.005648 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.196945 B = 4955.998864 C = 6316.302198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 C -0.155 4.155 4 C -0.152 4.152 5 N -0.714 5.714 6 C 0.558 3.442 7 O -0.561 6.561 8 C 0.004 3.996 9 C -0.123 4.123 10 C -0.089 4.089 11 H 0.146 0.854 12 C -0.097 4.097 13 C 0.097 3.903 14 N -0.602 5.602 15 C 0.536 3.464 16 O -0.568 6.568 17 C 0.022 3.978 18 C -0.536 4.536 19 H 0.057 0.943 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.960 3.040 23 H -0.272 1.272 24 H -0.275 1.275 25 H -0.274 1.274 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 10.100 -2.750 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 C -0.213 4.213 4 C -0.209 4.209 5 N -0.366 5.366 6 C 0.344 3.656 7 O -0.441 6.441 8 C -0.086 4.086 9 C -0.162 4.162 10 C -0.108 4.108 11 H 0.164 0.836 12 C -0.135 4.135 13 C -0.023 4.023 14 N -0.339 5.339 15 C 0.328 3.672 16 O -0.447 6.447 17 C -0.017 4.017 18 C -0.574 4.574 19 H 0.075 0.925 20 C -0.184 4.184 21 N -0.561 5.561 22 Si 0.785 3.215 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.752 10.930 -2.388 16.226 hybrid contribution 1.412 -0.807 0.696 1.769 sum -10.340 10.123 -1.692 14.569 Atomic orbital electron populations 1.22122 0.93207 1.02082 1.03541 1.20640 0.95140 0.92881 0.84405 1.22141 1.00264 0.95379 1.03468 1.22069 1.01182 1.00798 0.96866 1.46473 1.52439 1.32066 1.05632 1.19506 0.78776 0.83333 0.83981 1.90573 1.39645 1.26922 1.86953 1.21815 1.08953 0.87290 0.90527 1.23450 0.97587 0.99310 0.95838 1.23895 0.97273 0.98728 0.90906 0.83627 1.22499 1.05480 0.89500 0.95987 1.23270 0.92461 0.95539 0.91080 1.49131 1.28789 1.05676 1.50254 1.21393 0.77246 0.92430 0.76130 1.90545 1.50213 1.57816 1.46102 1.18984 0.97617 0.86525 0.98565 1.21311 1.12349 0.93194 1.30532 0.92511 1.25710 1.00088 0.95517 0.97119 1.70011 1.41853 0.99276 1.44951 0.85581 0.79506 0.77177 0.79262 1.19758 1.19996 1.19973 0.92957 0.92157 0.89489 0.89372 0.93998 0.92251 0.92312 0.93202 0.88099 0.76430 0.86766 0.88004 0.85507 0.89558 0.89568 0.89088 0.94148 0.94117 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.40 71.98 0.60 -3.21 16 2 C 0.15 4.41 1.06 3.60 0.00 4.42 16 3 C -0.15 -4.26 8.40 71.98 0.60 -3.66 16 4 C -0.15 -3.89 8.59 71.98 0.62 -3.27 16 5 N -0.71 -24.84 4.98 -422.92 -2.11 -26.95 16 6 C 0.56 19.28 7.08 87.66 0.62 19.91 16 7 O -0.56 -19.85 13.06 -3.02 -0.04 -19.89 16 8 C 0.00 0.12 2.46 3.02 0.01 0.13 16 9 C -0.12 -3.29 9.96 30.59 0.30 -2.99 16 10 C -0.09 -1.97 6.76 -9.94 -0.07 -2.04 16 11 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 12 C -0.10 -1.77 6.86 31.80 0.22 -1.56 16 13 C 0.10 2.47 7.03 86.39 0.61 3.08 16 14 N -0.60 -20.84 3.07 -762.17 -2.34 -23.18 16 15 C 0.54 23.88 6.75 87.66 0.59 24.47 16 16 O -0.57 -28.70 14.25 -3.01 -0.04 -28.75 16 17 C 0.02 1.11 4.48 29.10 0.13 1.25 16 18 C -0.54 -30.51 8.92 25.60 0.23 -30.28 16 19 H 0.06 3.39 6.75 -2.91 -0.02 3.37 16 20 C 0.01 0.82 5.46 84.65 0.46 1.29 16 21 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 22 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.74 6.17 -2.39 -0.01 1.72 16 28 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.84 6.17 -2.39 -0.01 1.83 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.40 15.69 5.23 -92.71 -0.48 15.20 16 36 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.39 7.38 -2.38 -0.02 2.37 16 42 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 2.06 7.96 -2.39 -0.02 2.05 16 44 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -68.73 353.68 3.22 -65.51 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.51 Total: 31.48 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.93 Total: 7.52 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.16 Total: -102.21 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.08 Total: -48.64 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.73 3.22 -65.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.163 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds