Wall clock time and date at job start Tue Mar 31 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47498 * 120.00213 * 2 1 3 5 5 O 1.42896 * 109.47269 * 64.99855 * 4 2 1 6 6 C 1.42901 * 114.00428 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47631 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47043 * 55.00115 * 7 6 5 9 9 O 1.42896 * 109.47152 * 295.00373 * 7 6 5 10 10 C 1.53000 * 109.47203 * 175.00238 * 7 6 5 11 11 N 1.46503 * 109.47097 * 185.00196 * 10 7 6 12 12 C 1.38812 * 120.00083 * 179.97438 * 11 10 7 13 13 C 1.39797 * 119.58545 * 359.97438 * 12 11 10 14 14 C 1.38604 * 119.49257 * 179.97438 * 13 12 11 15 15 C 1.38388 * 118.67866 * 0.27880 * 14 13 12 16 16 C 1.40553 * 119.15043 * 359.47988 * 15 14 13 17 17 C 1.41316 * 119.78497 * 180.22664 * 16 15 14 18 18 H 1.07990 * 120.00242 * 353.98590 * 17 16 15 19 19 C 1.40032 * 119.99759 * 173.98295 * 17 16 15 20 20 N 1.30741 * 120.00398 * 6.28864 * 19 17 16 21 21 Si 1.86800 * 119.99585 * 186.29393 * 19 17 16 22 22 H 1.48495 * 109.47413 * 94.98766 * 21 19 17 23 23 H 1.48509 * 109.46748 * 214.98487 * 21 19 17 24 24 H 1.48495 * 109.47262 * 334.98097 * 21 19 17 25 25 N 1.31961 * 119.58713 * 180.02562 * 12 11 10 26 26 H 1.09011 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47585 * 299.99783 * 1 2 3 28 28 H 1.09001 * 109.47235 * 60.00604 * 1 2 3 29 29 H 1.09003 * 109.47175 * 240.00326 * 2 1 3 30 30 H 1.08995 * 109.47021 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47294 * 300.00424 * 3 2 1 32 32 H 1.08997 * 109.46773 * 59.99720 * 3 2 1 33 33 H 1.09009 * 109.46982 * 305.00089 * 4 2 1 34 34 H 1.08999 * 109.47336 * 184.99995 * 4 2 1 35 35 H 1.09004 * 109.46717 * 59.99816 * 6 5 4 36 36 H 1.09001 * 109.47216 * 300.00772 * 6 5 4 37 37 H 0.96700 * 114.00154 * 299.99433 * 9 7 6 38 38 H 1.08992 * 109.47163 * 64.99992 * 10 7 6 39 39 H 1.08996 * 109.46706 * 304.99913 * 10 7 6 40 40 H 0.97001 * 119.99685 * 0.02562 * 11 10 7 41 41 H 1.07999 * 120.25255 * 359.97438 * 13 12 11 42 42 H 1.07999 * 120.65933 * 180.02562 * 14 13 12 43 43 H 1.07996 * 120.42241 * 179.72121 * 15 14 13 44 44 H 0.96993 * 120.00242 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 8 1.6620 -2.0981 1.1919 6 6 2.0915 -2.8661 2.3179 7 6 1.6335 -4.3163 2.1508 8 1 1.9938 -4.7036 1.1977 9 8 0.2059 -4.3712 2.1781 10 6 2.1984 -5.1643 3.2922 11 7 1.8603 -6.5721 3.0683 12 6 2.2694 -7.5374 3.9781 13 6 3.0042 -7.1566 5.1048 14 6 3.4112 -8.1219 6.0122 15 6 3.0799 -9.4434 5.7694 16 6 2.3347 -9.7626 4.6212 17 6 1.9849 -11.1071 4.3626 18 1 2.3705 -11.8959 4.9913 19 6 1.1380 -11.4166 3.2912 20 7 0.7699 -10.4795 2.4571 21 14 0.5341 -13.1683 3.0539 22 1 -0.7984 -13.3231 3.6906 23 1 0.4262 -13.4622 1.6022 24 1 1.4945 -14.1121 3.6799 25 7 1.9608 -8.8031 3.7681 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2950 35 1 1.6576 -2.4510 3.2276 36 1 3.1789 -2.8336 2.3865 37 1 -0.1848 -4.0415 2.9990 38 1 1.7688 -4.8334 4.2376 39 1 3.2820 -5.0519 3.3263 40 1 1.3511 -6.8297 2.2838 41 1 3.2527 -6.1181 5.2668 42 1 3.9793 -7.8488 6.8892 43 1 3.3865 -10.2191 6.4555 44 1 0.1836 -10.6940 1.7147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319279504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:28 Heat of formation + Delta-G solvation = -74.770322 kcal Electronic energy + Delta-G solvation = -22945.085052 eV Core-core repulsion = 19475.949417 eV Total energy + Delta-G solvation = -3469.135635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.01305 -38.22274 -37.21959 -35.10609 -34.52033 -33.15841 -30.79034 -30.13765 -28.58935 -27.42222 -26.38471 -25.35384 -24.52257 -22.07879 -21.23015 -20.44884 -20.36067 -17.50359 -16.98622 -16.68742 -16.43935 -16.24826 -15.36726 -14.89677 -14.71483 -14.58074 -14.37271 -14.03388 -13.58675 -13.32340 -13.14737 -12.94098 -12.74847 -12.51964 -12.45207 -12.16091 -11.85169 -11.84408 -11.33641 -11.18216 -11.17122 -10.99574 -10.95434 -10.77689 -10.59908 -10.40362 -10.02360 -9.89037 -9.79760 -9.45961 -8.88524 -7.89448 -7.48022 -6.50315 -6.30631 -4.44963 2.89698 3.13921 3.17353 3.24685 3.26030 3.32042 4.01248 4.19301 4.45037 4.55298 4.60934 4.79833 4.86235 4.91414 4.98569 5.08756 5.17400 5.18091 5.26475 5.33153 5.41995 5.46349 5.57727 5.65731 5.78281 5.80946 5.98490 6.03065 6.11285 6.14551 6.16910 6.56064 6.87089 6.89805 6.94064 7.00938 7.27862 7.60555 7.69129 7.82334 7.92463 8.20118 8.37996 8.71501 8.82819 9.13984 10.27196 10.43145 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002636 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.988901 B =10620.154823 C =11546.994300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.375 6.375 6 C 0.035 3.965 7 C 0.101 3.899 8 H 0.111 0.889 9 O -0.546 6.546 10 C 0.116 3.884 11 N -0.732 5.732 12 C 0.412 3.588 13 C -0.370 4.370 14 C -0.032 4.032 15 C -0.316 4.316 16 C 0.292 3.708 17 C -0.435 4.435 18 H 0.083 0.917 19 C 0.070 3.930 20 N -0.714 5.714 21 Si 0.905 3.095 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.531 5.531 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.372 0.628 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.401 0.599 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 19.021 -3.323 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.294 6.294 6 C -0.042 4.042 7 C 0.041 3.959 8 H 0.129 0.871 9 O -0.350 6.350 10 C -0.011 4.011 11 N -0.370 5.370 12 C 0.172 3.828 13 C -0.396 4.396 14 C -0.057 4.057 15 C -0.339 4.339 16 C 0.165 3.835 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.155 4.155 20 N -0.335 5.335 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.186 1.186 25 N -0.252 5.252 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.219 0.781 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.236 0.764 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.236 18.645 -4.895 19.278 hybrid contribution 0.253 -0.140 1.264 1.297 sum 0.489 18.505 -3.631 18.865 Atomic orbital electron populations 1.21789 0.94436 1.02780 1.01209 1.21093 0.96932 0.95464 0.97932 1.21791 1.01022 0.95335 1.02193 1.22589 0.98265 0.82301 0.98060 1.87947 1.78653 1.19909 1.42857 1.23153 0.99211 0.92632 0.89250 1.22111 0.81821 0.91556 1.00375 0.87137 1.86658 1.18325 1.87352 1.42685 1.21570 0.99572 0.83082 0.96868 1.43947 1.62800 1.02696 1.27557 1.18506 0.89105 0.88776 0.86445 1.20579 1.19017 0.97960 1.02030 1.20589 0.95749 0.93273 0.96055 1.21536 1.13816 0.95289 1.03293 1.18214 0.86799 0.92162 0.86344 1.19585 1.24418 0.91888 1.10775 0.89854 1.26061 0.95650 0.98641 0.95125 1.70146 1.21914 1.32956 1.08511 0.86359 0.79793 0.82712 0.78177 1.19577 1.20230 1.18589 1.68214 1.28499 0.96841 1.31671 0.91475 0.93027 0.92909 0.90345 0.92561 0.92025 0.92554 0.93491 0.93524 0.92862 0.92228 0.78092 0.92733 0.92202 0.76383 0.89403 0.88984 0.88703 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.07 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C 0.06 0.58 5.32 37.15 0.20 0.78 16 5 O -0.37 -4.41 9.84 -40.08 -0.39 -4.80 16 6 C 0.04 0.37 5.57 37.16 0.21 0.58 16 7 C 0.10 1.31 3.28 -26.73 -0.09 1.22 16 8 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 9 O -0.55 -7.72 13.25 -40.08 -0.53 -8.25 16 10 C 0.12 1.73 4.52 -4.04 -0.02 1.72 16 11 N -0.73 -14.90 5.67 -60.40 -0.34 -15.25 16 12 C 0.41 10.20 7.65 -155.33 -1.19 9.01 16 13 C -0.37 -8.56 9.34 -38.86 -0.36 -8.92 16 14 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 15 C -0.32 -8.11 9.83 -38.65 -0.38 -8.49 16 16 C 0.29 8.26 6.54 -85.00 -0.56 7.71 16 17 C -0.43 -11.96 9.13 -37.74 -0.34 -12.31 16 18 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 19 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 20 N -0.71 -19.41 11.49 55.55 0.64 -18.77 16 21 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 N -0.53 -14.95 7.92 -10.33 -0.08 -15.03 16 26 H 0.07 0.69 7.82 -51.92 -0.41 0.29 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.37 4.04 9.05 45.56 0.41 4.45 16 38 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.06 0.87 7.92 -51.93 -0.41 0.46 16 40 H 0.40 8.50 8.59 -40.82 -0.35 8.15 16 41 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.09 2.26 8.06 -52.49 -0.42 1.83 16 44 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.67 367.11 -9.40 -41.07 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.56 Total: 12.13 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.63 Total: -10.66 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.21 Total: -49.05 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.93 Total: -13.05 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.67 -9.40 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319279504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.705 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds