Wall clock time and date at job start Tue Mar 31 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47498 * 120.00213 * 2 1 3 5 5 O 1.42896 * 109.47269 * 64.99855 * 4 2 1 6 6 C 1.42901 * 114.00428 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47631 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47043 * 55.00115 * 7 6 5 9 9 O 1.42896 * 109.47152 * 295.00373 * 7 6 5 10 10 C 1.53000 * 109.47203 * 175.00238 * 7 6 5 11 11 N 1.46503 * 109.47097 * 185.00196 * 10 7 6 12 12 C 1.38812 * 120.00083 * 179.97438 * 11 10 7 13 13 C 1.39797 * 119.58545 * 359.97438 * 12 11 10 14 14 C 1.38604 * 119.49257 * 179.97438 * 13 12 11 15 15 C 1.38388 * 118.67866 * 0.27880 * 14 13 12 16 16 C 1.40553 * 119.15043 * 359.47988 * 15 14 13 17 17 C 1.41316 * 119.78497 * 180.22664 * 16 15 14 18 18 H 1.07990 * 120.00242 * 353.98590 * 17 16 15 19 19 C 1.40032 * 119.99759 * 173.98295 * 17 16 15 20 20 N 1.30741 * 120.00398 * 6.28864 * 19 17 16 21 21 Si 1.86800 * 119.99585 * 186.29393 * 19 17 16 22 22 H 1.48495 * 109.47413 * 94.98766 * 21 19 17 23 23 H 1.48509 * 109.46748 * 214.98487 * 21 19 17 24 24 H 1.48495 * 109.47262 * 334.98097 * 21 19 17 25 25 N 1.31961 * 119.58713 * 180.02562 * 12 11 10 26 26 H 1.09011 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47585 * 299.99783 * 1 2 3 28 28 H 1.09001 * 109.47235 * 60.00604 * 1 2 3 29 29 H 1.09003 * 109.47175 * 240.00326 * 2 1 3 30 30 H 1.08995 * 109.47021 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47294 * 300.00424 * 3 2 1 32 32 H 1.08997 * 109.46773 * 59.99720 * 3 2 1 33 33 H 1.09009 * 109.46982 * 305.00089 * 4 2 1 34 34 H 1.08999 * 109.47336 * 184.99995 * 4 2 1 35 35 H 1.09004 * 109.46717 * 59.99816 * 6 5 4 36 36 H 1.09001 * 109.47216 * 300.00772 * 6 5 4 37 37 H 0.96700 * 114.00154 * 299.99433 * 9 7 6 38 38 H 1.08992 * 109.47163 * 64.99992 * 10 7 6 39 39 H 1.08996 * 109.46706 * 304.99913 * 10 7 6 40 40 H 0.97001 * 119.99685 * 0.02562 * 11 10 7 41 41 H 1.07999 * 120.25255 * 359.97438 * 13 12 11 42 42 H 1.07999 * 120.65933 * 180.02562 * 14 13 12 43 43 H 1.07996 * 120.42241 * 179.72121 * 15 14 13 44 44 H 0.96993 * 120.00242 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 8 1.6620 -2.0981 1.1919 6 6 2.0915 -2.8661 2.3179 7 6 1.6335 -4.3163 2.1508 8 1 1.9938 -4.7036 1.1977 9 8 0.2059 -4.3712 2.1781 10 6 2.1984 -5.1643 3.2922 11 7 1.8603 -6.5721 3.0683 12 6 2.2694 -7.5374 3.9781 13 6 3.0042 -7.1566 5.1048 14 6 3.4112 -8.1219 6.0122 15 6 3.0799 -9.4434 5.7694 16 6 2.3347 -9.7626 4.6212 17 6 1.9849 -11.1071 4.3626 18 1 2.3705 -11.8959 4.9913 19 6 1.1380 -11.4166 3.2912 20 7 0.7699 -10.4795 2.4571 21 14 0.5341 -13.1683 3.0539 22 1 -0.7984 -13.3231 3.6906 23 1 0.4262 -13.4622 1.6022 24 1 1.4945 -14.1121 3.6799 25 7 1.9608 -8.8031 3.7681 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2950 35 1 1.6576 -2.4510 3.2276 36 1 3.1789 -2.8336 2.3865 37 1 -0.1848 -4.0415 2.9990 38 1 1.7688 -4.8334 4.2376 39 1 3.2820 -5.0519 3.3263 40 1 1.3511 -6.8297 2.2838 41 1 3.2527 -6.1181 5.2668 42 1 3.9793 -7.8488 6.8892 43 1 3.3865 -10.2191 6.4555 44 1 0.1836 -10.6940 1.7147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319279504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:28 Heat of formation + Delta-G solvation = -96.268390 kcal Electronic energy + Delta-G solvation = -22946.017278 eV Core-core repulsion = 19475.949417 eV Total energy + Delta-G solvation = -3470.067861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28338 -39.65396 -38.29220 -36.24016 -35.73689 -34.97483 -32.42862 -31.75724 -30.15345 -28.01442 -27.41763 -27.12036 -25.60151 -23.57451 -22.71336 -22.15004 -21.11233 -19.31618 -18.26181 -17.83370 -17.55530 -17.29579 -16.55808 -16.46073 -16.26154 -15.81779 -15.51297 -15.24568 -14.90581 -14.69449 -14.58479 -14.26418 -13.86324 -13.62882 -13.49371 -13.25522 -13.05276 -12.84797 -12.79400 -12.72976 -12.57524 -12.26974 -11.98674 -11.91308 -11.76734 -11.71313 -11.48385 -11.30061 -11.04674 -10.68449 -10.55688 -9.83444 -9.43270 -8.29763 -8.23239 -6.47599 1.06207 1.35202 1.41139 1.55618 1.58043 2.24983 2.29296 2.90007 2.92644 3.46503 3.79516 3.93938 3.96201 3.98336 4.06050 4.09101 4.28517 4.38361 4.43592 4.45600 4.53494 4.60437 4.64580 4.76285 4.79461 4.81011 4.98809 5.00068 5.01424 5.02191 5.06073 5.13199 5.23000 5.36481 5.39499 5.43708 5.71813 5.96762 6.06919 6.23089 6.25258 6.55920 6.77100 6.83567 6.94601 7.21007 8.35134 8.51720 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002636 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.988901 B =10620.154823 C =11546.994300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.141 4.141 4 C 0.060 3.940 5 O -0.400 6.400 6 C 0.041 3.959 7 C 0.110 3.890 8 H 0.094 0.906 9 O -0.567 6.567 10 C 0.115 3.885 11 N -0.731 5.731 12 C 0.392 3.608 13 C -0.365 4.365 14 C -0.030 4.030 15 C -0.344 4.344 16 C 0.257 3.743 17 C -0.472 4.472 18 H 0.087 0.913 19 C 0.024 3.976 20 N -0.753 5.753 21 Si 0.987 3.013 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.254 1.254 25 N -0.568 5.568 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.392 0.608 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 20.594 -2.659 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.016 4.016 5 O -0.320 6.320 6 C -0.036 4.036 7 C 0.051 3.949 8 H 0.112 0.888 9 O -0.374 6.374 10 C -0.009 4.009 11 N -0.366 5.366 12 C 0.152 3.848 13 C -0.391 4.391 14 C -0.054 4.054 15 C -0.367 4.367 16 C 0.130 3.870 17 C -0.504 4.504 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.375 5.375 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.178 1.178 25 N -0.291 5.291 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.226 0.774 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.121 0.879 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.714 20.282 -4.219 20.728 hybrid contribution 0.140 -0.448 1.069 1.167 sum 0.854 19.834 -3.150 20.101 Atomic orbital electron populations 1.21760 0.94836 1.01398 1.01991 1.21132 0.96618 0.96625 0.97253 1.21755 1.01399 0.93843 1.02852 1.22759 0.99042 0.81015 0.98755 1.87915 1.79169 1.21363 1.43514 1.23066 1.00129 0.90727 0.89697 1.21956 0.81232 0.93035 0.98710 0.88826 1.86626 1.19104 1.87725 1.43897 1.21817 1.00487 0.80310 0.98336 1.44164 1.61930 1.04188 1.26318 1.18986 0.89310 0.88712 0.87813 1.20959 1.17503 0.99690 1.00929 1.21033 0.94986 0.92277 0.97113 1.21701 1.14815 0.96929 1.03240 1.18702 0.87803 0.92927 0.87558 1.19940 1.26100 0.92224 1.12176 0.89492 1.26993 0.95186 1.03368 0.94197 1.70254 1.22695 1.35405 1.09172 0.85141 0.79148 0.76665 0.78357 1.18994 1.19365 1.17796 1.68173 1.29901 0.98320 1.32687 0.93853 0.92328 0.92078 0.91523 0.91936 0.91446 0.91835 0.92438 0.92461 0.90896 0.90688 0.76536 0.91278 0.90970 0.77359 0.85953 0.85073 0.87936 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.09 71.98 0.65 -1.64 16 2 C -0.10 -1.48 3.16 -10.80 -0.03 -1.52 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C 0.06 0.97 5.32 71.98 0.38 1.36 16 5 O -0.40 -8.87 9.84 -144.34 -1.42 -10.29 16 6 C 0.04 0.77 5.57 71.98 0.40 1.17 16 7 C 0.11 2.73 3.28 30.59 0.10 2.83 16 8 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 9 O -0.57 -15.69 13.25 -144.34 -1.91 -17.61 16 10 C 0.12 3.24 4.52 86.38 0.39 3.63 16 11 N -0.73 -29.61 5.67 -345.00 -1.96 -31.56 16 12 C 0.39 19.44 7.65 133.42 1.02 20.46 16 13 C -0.37 -16.22 9.34 22.73 0.21 -16.01 16 14 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 15 C -0.34 -17.77 9.83 22.87 0.22 -17.54 16 16 C 0.26 15.00 6.54 40.18 0.26 15.27 16 17 C -0.47 -26.85 9.13 23.46 0.21 -26.63 16 18 H 0.09 4.63 7.85 -2.92 -0.02 4.61 16 19 C 0.02 1.29 5.49 85.29 0.47 1.75 16 20 N -0.75 -42.26 11.49 21.84 0.25 -42.01 16 21 Si 0.99 39.78 29.56 68.60 2.03 41.80 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 25 N -0.57 -32.87 7.92 -186.59 -1.48 -34.35 16 26 H 0.04 0.90 7.82 -2.38 -0.02 0.88 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.39 7.92 9.05 -74.06 -0.67 7.25 16 38 H 0.07 1.78 7.92 -2.39 -0.02 1.76 16 39 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 40 H 0.39 17.05 8.59 -92.71 -0.80 16.25 16 41 H 0.12 4.50 6.68 -2.91 -0.02 4.48 16 42 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 44 H 0.28 14.04 8.29 -92.71 -0.77 13.27 16 Total: -1.00 -70.50 367.11 0.23 -70.27 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.47 Total: 42.55 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.19 Total: -18.80 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.18 Total: -107.93 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -3.33 Total: -27.90 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -70.50 0.23 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319279504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.995 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds