Wall clock time and date at job start Tue Mar 31 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 C 1.53004 * 109.46964 * 119.99568 * 2 1 3 5 5 O 1.42902 * 109.46901 * 65.00758 * 4 2 1 6 6 C 1.42899 * 113.99703 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47016 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47047 * 304.99748 * 7 6 5 9 9 O 1.42898 * 109.47181 * 64.99937 * 7 6 5 10 10 C 1.52997 * 109.47019 * 185.00113 * 7 6 5 11 11 N 1.46502 * 109.47351 * 180.02562 * 10 7 6 12 12 C 1.38821 * 120.00153 * 179.72576 * 11 10 7 13 13 C 1.39787 * 119.58728 * 0.26717 * 12 11 10 14 14 C 1.38594 * 119.49447 * 179.97438 * 13 12 11 15 15 C 1.38389 * 118.68137 * 0.02562 * 14 13 12 16 16 C 1.40555 * 119.14744 * 359.97438 * 15 14 13 17 17 C 1.41318 * 119.78834 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99473 * 353.78340 * 17 16 15 19 19 C 1.40021 * 120.00202 * 173.77960 * 17 16 15 20 20 N 1.30739 * 120.00272 * 6.34752 * 19 17 16 21 21 Si 1.86804 * 119.99979 * 186.35174 * 19 17 16 22 22 H 1.48493 * 109.47383 * 94.98247 * 21 19 17 23 23 H 1.48496 * 109.47041 * 214.98400 * 21 19 17 24 24 H 1.48500 * 109.46800 * 334.98368 * 21 19 17 25 25 N 1.31960 * 119.58223 * 180.02562 * 12 11 10 26 26 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47659 * 299.99860 * 1 2 3 28 28 H 1.08995 * 109.47405 * 60.00462 * 1 2 3 29 29 H 1.08993 * 109.47310 * 240.00149 * 2 1 3 30 30 H 1.09007 * 109.47030 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47247 * 299.99340 * 3 2 1 32 32 H 1.08994 * 109.47616 * 59.99838 * 3 2 1 33 33 H 1.08995 * 109.47575 * 305.00077 * 4 2 1 34 34 H 1.09006 * 109.46839 * 185.00228 * 4 2 1 35 35 H 1.09006 * 109.47337 * 59.99467 * 6 5 4 36 36 H 1.09000 * 109.47164 * 300.00007 * 6 5 4 37 37 H 0.96697 * 113.99763 * 59.99921 * 9 7 6 38 38 H 1.08998 * 109.47656 * 59.99653 * 10 7 6 39 39 H 1.09009 * 109.47019 * 299.99780 * 10 7 6 40 40 H 0.97005 * 119.99272 * 359.97438 * 11 10 7 41 41 H 1.08002 * 120.25814 * 359.96145 * 13 12 11 42 42 H 1.08003 * 120.66214 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.42803 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0924 -2.8662 2.3176 7 6 1.6344 -4.3165 2.1505 8 1 0.5560 -4.3412 1.9942 9 8 2.2926 -4.8969 1.0228 10 6 1.9854 -5.1105 3.4103 11 7 1.5475 -6.4993 3.2502 12 6 1.7648 -7.4174 4.2685 13 6 2.3972 -7.0062 5.4453 14 6 2.6126 -7.9243 6.4609 15 6 2.1921 -9.2297 6.2763 16 6 1.5619 -9.5819 5.0703 17 6 1.1266 -10.9110 4.8677 18 1 1.3666 -11.6743 5.5931 19 6 0.3840 -11.2383 3.7266 20 7 0.1990 -10.3462 2.7890 21 14 -0.3424 -12.9496 3.5441 22 1 -1.7476 -12.9447 4.0241 23 1 -0.3090 -13.3516 2.1150 24 1 0.4519 -13.9128 4.3480 25 7 1.3674 -8.6664 4.1152 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 1.6592 -2.4513 3.2278 36 1 3.1798 -2.8337 2.3853 37 1 3.2570 -4.9085 1.0933 38 1 1.4834 -4.6677 4.2706 39 1 3.0640 -5.0857 3.5667 40 1 1.1090 -6.7781 2.4311 41 1 2.7157 -5.9808 5.5622 42 1 3.0991 -7.6269 7.3782 43 1 2.3461 -9.9684 7.0490 44 1 -0.3157 -10.5728 1.9987 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319279505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:32 Heat of formation + Delta-G solvation = -74.764027 kcal Electronic energy + Delta-G solvation = -22942.666415 eV Core-core repulsion = 19473.531054 eV Total energy + Delta-G solvation = -3469.135362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.01333 -38.22292 -37.22123 -35.10956 -34.49949 -33.15250 -30.79526 -30.13881 -28.59303 -27.43399 -26.38539 -25.35268 -24.51963 -22.06287 -21.22982 -20.45771 -20.35286 -17.50207 -16.97861 -16.79627 -16.27658 -16.19290 -15.56369 -14.89509 -14.70165 -14.54917 -14.30338 -14.04588 -13.61208 -13.33801 -13.08297 -13.00018 -12.74581 -12.55396 -12.40936 -12.18251 -11.84671 -11.83471 -11.35245 -11.17760 -11.16790 -10.99702 -10.95549 -10.77228 -10.60301 -10.40137 -10.01838 -9.88686 -9.79837 -9.46261 -8.88341 -7.89367 -7.47859 -6.50088 -6.30501 -4.44873 2.89761 3.13976 3.17401 3.24798 3.25976 3.32051 4.01307 4.18583 4.47101 4.55073 4.60639 4.79227 4.86306 4.91869 4.98727 5.08263 5.16506 5.19510 5.26523 5.31756 5.42467 5.45757 5.57015 5.64796 5.77725 5.81219 5.98933 6.02872 6.09047 6.15046 6.16542 6.56161 6.87305 6.89846 6.94132 7.00998 7.28010 7.60679 7.69738 7.82514 7.92618 8.20386 8.38221 8.72153 8.82953 9.14213 10.27332 10.43261 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.002638 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.457836 B =10612.969885 C =11503.319071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.375 6.375 6 C 0.035 3.965 7 C 0.101 3.899 8 H 0.110 0.890 9 O -0.546 6.546 10 C 0.115 3.885 11 N -0.732 5.732 12 C 0.412 3.588 13 C -0.370 4.370 14 C -0.032 4.032 15 C -0.316 4.316 16 C 0.292 3.708 17 C -0.435 4.435 18 H 0.083 0.917 19 C 0.071 3.929 20 N -0.714 5.714 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.531 5.531 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.373 0.627 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.401 0.599 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 18.582 -4.461 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.294 6.294 6 C -0.043 4.043 7 C 0.042 3.958 8 H 0.128 0.872 9 O -0.350 6.350 10 C -0.012 4.012 11 N -0.370 5.370 12 C 0.172 3.828 13 C -0.396 4.396 14 C -0.057 4.057 15 C -0.339 4.339 16 C 0.165 3.835 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.155 4.155 20 N -0.335 5.335 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.186 1.186 25 N -0.252 5.252 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.237 0.763 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.545 18.360 -5.689 19.283 hybrid contribution 0.702 -0.242 1.005 1.250 sum 2.247 18.118 -4.684 18.849 Atomic orbital electron populations 1.21789 0.94505 1.02656 1.01284 1.21093 0.96873 0.95474 0.97983 1.21791 1.01023 0.95327 1.02195 1.22590 0.98304 0.82282 0.98039 1.87948 1.78497 1.19842 1.43071 1.23154 0.98874 0.92753 0.89476 1.22109 0.99088 0.88429 0.86223 0.87191 1.86653 1.23603 1.83147 1.41599 1.21563 0.99287 0.83848 0.96457 1.43937 1.67770 1.06067 1.19214 1.18505 0.89666 0.88978 0.85679 1.20576 1.21665 0.99162 0.98192 1.20587 0.95623 0.93445 0.96009 1.21537 1.15252 0.96143 1.01013 1.18216 0.87095 0.92104 0.86108 1.19584 1.28574 0.93561 1.04946 0.89857 1.26058 0.95686 0.98480 0.95248 1.70148 1.25585 1.33204 1.04577 0.86360 0.79900 0.82515 0.78277 1.19589 1.20223 1.18584 1.68214 1.26915 0.98397 1.31689 0.91639 0.92985 0.92843 0.90285 0.92564 0.92019 0.92552 0.93473 0.93541 0.92251 0.92845 0.78035 0.92179 0.92790 0.76307 0.89403 0.88988 0.88704 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.09 37.16 0.34 -0.88 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.07 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C 0.06 0.58 5.32 37.16 0.20 0.78 16 5 O -0.37 -4.41 9.84 -40.09 -0.39 -4.80 16 6 C 0.04 0.37 5.57 37.16 0.21 0.58 16 7 C 0.10 1.31 3.33 -26.73 -0.09 1.22 16 8 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 9 O -0.55 -7.78 13.05 -40.09 -0.52 -8.30 16 10 C 0.12 1.73 4.55 -4.04 -0.02 1.71 16 11 N -0.73 -14.90 5.61 -60.39 -0.34 -15.24 16 12 C 0.41 10.20 7.65 -155.33 -1.19 9.01 16 13 C -0.37 -8.56 9.34 -38.87 -0.36 -8.93 16 14 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 15 C -0.32 -8.11 9.83 -38.65 -0.38 -8.49 16 16 C 0.29 8.26 6.54 -85.00 -0.56 7.71 16 17 C -0.43 -11.96 9.13 -37.74 -0.34 -12.31 16 18 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 19 C 0.07 1.84 5.49 -17.35 -0.10 1.75 16 20 N -0.71 -19.41 11.48 55.55 0.64 -18.77 16 21 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 N -0.53 -14.95 7.91 -10.33 -0.08 -15.03 16 26 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.37 4.13 9.04 45.56 0.41 4.54 16 38 H 0.06 0.87 7.92 -51.93 -0.41 0.46 16 39 H 0.05 0.77 7.92 -51.92 -0.41 0.36 16 40 H 0.40 8.53 8.47 -40.82 -0.35 8.18 16 41 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 42 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.09 2.26 8.06 -52.49 -0.42 1.83 16 44 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -31.64 366.81 -9.39 -41.03 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.56 Total: 12.20 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.64 Total: -10.66 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.22 Total: -49.03 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.92 Total: -13.11 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -9.39 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319279505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.731 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds