Wall clock time and date at job start Tue Mar 31 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 C 1.53004 * 109.46964 * 119.99568 * 2 1 3 5 5 O 1.42902 * 109.46901 * 65.00758 * 4 2 1 6 6 C 1.42899 * 113.99703 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47016 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47047 * 304.99748 * 7 6 5 9 9 O 1.42898 * 109.47181 * 64.99937 * 7 6 5 10 10 C 1.52997 * 109.47019 * 185.00113 * 7 6 5 11 11 N 1.46502 * 109.47351 * 180.02562 * 10 7 6 12 12 C 1.38821 * 120.00153 * 179.72576 * 11 10 7 13 13 C 1.39787 * 119.58728 * 0.26717 * 12 11 10 14 14 C 1.38594 * 119.49447 * 179.97438 * 13 12 11 15 15 C 1.38389 * 118.68137 * 0.02562 * 14 13 12 16 16 C 1.40555 * 119.14744 * 359.97438 * 15 14 13 17 17 C 1.41318 * 119.78834 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99473 * 353.78340 * 17 16 15 19 19 C 1.40021 * 120.00202 * 173.77960 * 17 16 15 20 20 N 1.30739 * 120.00272 * 6.34752 * 19 17 16 21 21 Si 1.86804 * 119.99979 * 186.35174 * 19 17 16 22 22 H 1.48493 * 109.47383 * 94.98247 * 21 19 17 23 23 H 1.48496 * 109.47041 * 214.98400 * 21 19 17 24 24 H 1.48500 * 109.46800 * 334.98368 * 21 19 17 25 25 N 1.31960 * 119.58223 * 180.02562 * 12 11 10 26 26 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47659 * 299.99860 * 1 2 3 28 28 H 1.08995 * 109.47405 * 60.00462 * 1 2 3 29 29 H 1.08993 * 109.47310 * 240.00149 * 2 1 3 30 30 H 1.09007 * 109.47030 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47247 * 299.99340 * 3 2 1 32 32 H 1.08994 * 109.47616 * 59.99838 * 3 2 1 33 33 H 1.08995 * 109.47575 * 305.00077 * 4 2 1 34 34 H 1.09006 * 109.46839 * 185.00228 * 4 2 1 35 35 H 1.09006 * 109.47337 * 59.99467 * 6 5 4 36 36 H 1.09000 * 109.47164 * 300.00007 * 6 5 4 37 37 H 0.96697 * 113.99763 * 59.99921 * 9 7 6 38 38 H 1.08998 * 109.47656 * 59.99653 * 10 7 6 39 39 H 1.09009 * 109.47019 * 299.99780 * 10 7 6 40 40 H 0.97005 * 119.99272 * 359.97438 * 11 10 7 41 41 H 1.08002 * 120.25814 * 359.96145 * 13 12 11 42 42 H 1.08003 * 120.66214 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.42803 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0924 -2.8662 2.3176 7 6 1.6344 -4.3165 2.1505 8 1 0.5560 -4.3412 1.9942 9 8 2.2926 -4.8969 1.0228 10 6 1.9854 -5.1105 3.4103 11 7 1.5475 -6.4993 3.2502 12 6 1.7648 -7.4174 4.2685 13 6 2.3972 -7.0062 5.4453 14 6 2.6126 -7.9243 6.4609 15 6 2.1921 -9.2297 6.2763 16 6 1.5619 -9.5819 5.0703 17 6 1.1266 -10.9110 4.8677 18 1 1.3666 -11.6743 5.5931 19 6 0.3840 -11.2383 3.7266 20 7 0.1990 -10.3462 2.7890 21 14 -0.3424 -12.9496 3.5441 22 1 -1.7476 -12.9447 4.0241 23 1 -0.3090 -13.3516 2.1150 24 1 0.4519 -13.9128 4.3480 25 7 1.3674 -8.6664 4.1152 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 1.6592 -2.4513 3.2278 36 1 3.1798 -2.8337 2.3853 37 1 3.2570 -4.9085 1.0933 38 1 1.4834 -4.6677 4.2706 39 1 3.0640 -5.0857 3.5667 40 1 1.1090 -6.7781 2.4311 41 1 2.7157 -5.9808 5.5622 42 1 3.0991 -7.6269 7.3782 43 1 2.3461 -9.9684 7.0490 44 1 -0.3157 -10.5728 1.9987 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319279505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:32 Heat of formation + Delta-G solvation = -96.176999 kcal Electronic energy + Delta-G solvation = -22943.594951 eV Core-core repulsion = 19473.531054 eV Total energy + Delta-G solvation = -3470.063898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28500 -39.65272 -38.29790 -36.22986 -35.73360 -34.96616 -32.42962 -31.75893 -30.16200 -28.02170 -27.41669 -27.11924 -25.59830 -23.56618 -22.71328 -22.13769 -21.11890 -19.31425 -18.25357 -17.83455 -17.67835 -17.07522 -16.56027 -16.47099 -16.40312 -15.81893 -15.54892 -15.12017 -14.90256 -14.76003 -14.54132 -14.27745 -13.86854 -13.64085 -13.49456 -13.24870 -13.04142 -12.87564 -12.78756 -12.72769 -12.57496 -12.26763 -11.99490 -11.89024 -11.77292 -11.72056 -11.48328 -11.29643 -11.05123 -10.68189 -10.55903 -9.83377 -9.43122 -8.29511 -8.23128 -6.47520 1.06296 1.35288 1.41175 1.55683 1.58055 2.25022 2.28976 2.90422 2.92481 3.47624 3.79666 3.92955 3.95574 3.99443 4.06385 4.09022 4.27964 4.38375 4.43829 4.45494 4.53817 4.60673 4.63666 4.76369 4.79621 4.80555 4.98897 4.99556 5.01490 5.03257 5.05094 5.13055 5.22777 5.36578 5.39544 5.42555 5.71935 5.96843 6.06976 6.23223 6.25234 6.56004 6.76572 6.83845 6.95081 7.21334 8.35281 8.51826 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.002638 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.457836 B =10612.969885 C =11503.319071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.060 3.940 5 O -0.400 6.400 6 C 0.041 3.959 7 C 0.110 3.890 8 H 0.094 0.906 9 O -0.567 6.567 10 C 0.115 3.885 11 N -0.730 5.730 12 C 0.393 3.607 13 C -0.365 4.365 14 C -0.030 4.030 15 C -0.344 4.344 16 C 0.257 3.743 17 C -0.472 4.472 18 H 0.087 0.913 19 C 0.024 3.976 20 N -0.753 5.753 21 Si 0.987 3.013 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.254 1.254 25 N -0.568 5.568 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.393 0.607 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 20.110 -3.927 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.016 4.016 5 O -0.320 6.320 6 C -0.036 4.036 7 C 0.051 3.949 8 H 0.112 0.888 9 O -0.373 6.373 10 C -0.010 4.010 11 N -0.366 5.366 12 C 0.152 3.848 13 C -0.391 4.391 14 C -0.054 4.054 15 C -0.367 4.367 16 C 0.130 3.870 17 C -0.504 4.504 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.375 5.375 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.178 1.178 25 N -0.291 5.291 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.227 0.773 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.121 0.879 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.227 19.948 -5.151 20.723 hybrid contribution 0.556 -0.542 0.836 1.142 sum 2.783 19.406 -4.314 20.074 Atomic orbital electron populations 1.21772 0.94892 1.01388 1.02056 1.21128 0.96581 0.96624 0.97269 1.21756 1.01413 0.93836 1.02842 1.22760 0.99107 0.80991 0.98711 1.87916 1.79045 1.21297 1.43692 1.23066 1.00002 0.90793 0.89765 1.21964 0.98253 0.89878 0.84837 0.88783 1.86621 1.24914 1.83563 1.42250 1.21808 1.00102 0.81144 0.97954 1.44146 1.67092 1.07512 1.17815 1.18983 0.89628 0.88866 0.87329 1.20955 1.20174 1.00755 0.97205 1.21030 0.94518 0.92425 0.97434 1.21702 1.16489 0.97774 1.00731 1.18703 0.88045 0.92892 0.87348 1.19938 1.30308 0.93960 1.06233 0.89497 1.26989 0.95500 1.02944 0.94305 1.70256 1.26470 1.35567 1.05222 0.85142 0.78900 0.76766 0.78510 1.18994 1.19368 1.17797 1.68173 1.28400 0.99924 1.32575 0.93858 0.92317 0.92002 0.91509 0.91917 0.91439 0.91860 0.92483 0.92422 0.90659 0.90938 0.76547 0.91027 0.91267 0.77297 0.85960 0.85083 0.87940 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.09 71.98 0.65 -1.65 16 2 C -0.10 -1.48 3.16 -10.79 -0.03 -1.51 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C 0.06 0.97 5.32 71.98 0.38 1.36 16 5 O -0.40 -8.86 9.84 -144.34 -1.42 -10.28 16 6 C 0.04 0.77 5.57 71.98 0.40 1.17 16 7 C 0.11 2.73 3.33 30.59 0.10 2.83 16 8 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 9 O -0.57 -15.83 13.05 -144.34 -1.88 -17.71 16 10 C 0.11 3.23 4.55 86.38 0.39 3.62 16 11 N -0.73 -29.57 5.61 -344.99 -1.94 -31.51 16 12 C 0.39 19.44 7.65 133.42 1.02 20.46 16 13 C -0.37 -16.23 9.34 22.73 0.21 -16.01 16 14 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 15 C -0.34 -17.77 9.83 22.87 0.22 -17.55 16 16 C 0.26 15.00 6.54 40.18 0.26 15.26 16 17 C -0.47 -26.85 9.13 23.46 0.21 -26.63 16 18 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 19 C 0.02 1.29 5.49 85.29 0.47 1.76 16 20 N -0.75 -42.26 11.48 21.84 0.25 -42.01 16 21 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 25 N -0.57 -32.86 7.91 -186.59 -1.48 -34.34 16 26 H 0.04 0.87 7.82 -2.39 -0.02 0.86 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.39 8.11 9.04 -74.06 -0.67 7.44 16 38 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 39 H 0.07 1.77 7.92 -2.38 -0.02 1.75 16 40 H 0.39 17.09 8.47 -92.70 -0.79 16.31 16 41 H 0.12 4.50 6.68 -2.91 -0.02 4.48 16 42 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 44 H 0.28 14.04 8.29 -92.71 -0.77 13.27 16 Total: -1.00 -70.40 366.81 0.29 -70.11 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.46 Total: 42.75 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.19 Total: -18.81 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.16 Total: -107.85 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -3.30 Total: -27.99 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -70.40 0.29 -70.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319279505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.064 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds