Wall clock time and date at job start Tue Mar 31 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00639 * 2 1 4 4 C 1.53071 * 109.44365 * 119.79302 * 3 2 1 5 5 C 1.53192 * 109.29669 * 181.24072 * 4 3 2 6 6 N 1.46926 * 108.89029 * 305.57921 * 5 4 3 7 7 C 1.34779 * 120.62965 * 233.55576 * 6 5 4 8 8 O 1.21345 * 119.99804 * 353.07380 * 7 6 5 9 9 C 1.49450 * 119.99959 * 173.06654 * 7 6 5 10 10 O 1.21357 * 120.00090 * 353.33728 * 9 7 6 11 11 N 1.34774 * 120.00173 * 173.33642 * 9 7 6 12 12 C 1.46501 * 120.00243 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46913 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.46976 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00021 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00345 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99476 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00569 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47299 * 119.99481 * 19 17 15 22 22 H 1.48495 * 109.47200 * 239.99704 * 19 17 15 23 23 C 1.46927 * 118.74163 * 53.53736 * 6 5 4 24 24 C 1.53039 * 109.45899 * 240.00182 * 3 2 1 25 25 H 1.07998 * 120.00223 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99420 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99501 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.45335 * 359.97077 * 3 2 1 29 29 H 1.08998 * 109.39068 * 61.36173 * 4 3 2 30 30 H 1.09008 * 109.62009 * 301.25665 * 4 3 2 31 31 H 1.08995 * 109.58780 * 185.72372 * 5 4 3 32 32 H 1.09003 * 109.58422 * 65.43621 * 5 4 3 33 33 H 0.96998 * 119.99905 * 0.02562 * 11 9 7 34 34 H 1.08993 * 109.47511 * 300.00634 * 12 11 9 35 35 H 1.09003 * 109.46282 * 60.00529 * 12 11 9 36 36 H 1.09001 * 109.46957 * 300.00542 * 13 12 11 37 37 H 1.09003 * 109.46858 * 60.00317 * 13 12 11 38 38 H 1.09005 * 109.46845 * 299.99809 * 14 13 12 39 39 H 1.08998 * 109.47189 * 59.99896 * 14 13 12 40 40 H 0.97003 * 119.99726 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58946 * 66.17446 * 23 6 5 42 42 H 1.08998 * 109.59100 * 186.46270 * 23 6 5 43 43 H 1.08999 * 109.49875 * 58.67382 * 24 3 2 44 44 H 1.09001 * 109.52161 * 298.58857 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 2.9395 1.3876 1.2526 5 6 3.6803 2.7285 1.2649 6 7 4.4144 2.8779 0.0010 7 6 5.7351 3.1470 0.0016 8 8 6.3037 3.3923 1.0451 9 6 6.4991 3.1431 -1.2828 10 8 5.9605 2.7806 -2.3082 11 7 7.7863 3.5421 -1.3025 12 6 8.5354 3.5377 -2.5615 13 6 9.9614 4.0312 -2.3083 14 6 10.7435 4.0272 -3.6232 15 6 12.1481 4.5126 -3.3737 16 1 12.4524 4.7961 -2.3769 17 6 13.0445 4.5959 -4.4179 18 7 12.6738 4.2513 -5.6318 19 14 14.7858 5.1970 -4.1085 20 1 14.9496 5.5193 -2.6682 21 1 15.7513 4.1356 -4.4916 22 1 15.0408 6.4143 -4.9198 23 6 3.6816 2.7280 -1.2637 24 6 2.9434 1.3857 -1.2497 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3551 2.1334 -0.0005 29 1 3.6630 0.5724 1.2428 30 1 2.3144 1.3092 2.1422 31 1 4.3811 2.7511 2.0993 32 1 2.9620 3.5418 1.3687 33 1 8.2169 3.8314 -0.4830 34 1 8.5676 2.5244 -2.9617 35 1 8.0446 4.1960 -3.2785 36 1 9.9294 5.0445 -1.9079 37 1 10.4518 3.3725 -1.5914 38 1 10.7754 3.0139 -4.0239 39 1 10.2529 4.6860 -4.3397 40 1 13.3045 4.3095 -6.3665 41 1 2.9617 3.5398 -1.3673 42 1 4.3830 2.7530 -2.0976 43 1 2.3194 1.3044 -2.1397 44 1 3.6684 0.5719 -1.2379 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322764302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:55 Heat of formation + Delta-G solvation = -55.819520 kcal Electronic energy + Delta-G solvation = -23090.232519 eV Core-core repulsion = 19621.918652 eV Total energy + Delta-G solvation = -3468.313866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04703 -39.03546 -38.00923 -35.90010 -34.83583 -33.36790 -31.53486 -31.28638 -31.22390 -27.43503 -26.06426 -24.29002 -23.51190 -22.47083 -21.03887 -20.70582 -20.18784 -19.58787 -17.76804 -17.11349 -16.41874 -16.10227 -15.75849 -15.28838 -15.05381 -14.92111 -14.78647 -14.45793 -14.18891 -14.15565 -13.93230 -13.37137 -12.79532 -12.66677 -12.45816 -12.32485 -11.90536 -11.83793 -11.76765 -11.48347 -11.16841 -11.03908 -10.94545 -10.78848 -10.74923 -10.57675 -9.93367 -9.76152 -9.57202 -9.19115 -9.12006 -8.98149 -8.93000 -8.39855 -6.04477 -4.07378 1.36193 1.91881 2.27117 3.15400 3.29151 3.36813 3.40427 3.46000 4.27552 4.30914 4.42683 4.45680 4.63347 4.79588 4.88466 5.00067 5.04381 5.17388 5.31672 5.36910 5.42100 5.48370 5.55114 5.59726 5.62675 5.65569 5.73940 5.77894 5.99871 6.04458 6.13107 6.26394 6.41313 6.42901 6.51008 6.71770 6.90716 6.94081 7.27705 7.59906 7.69975 7.71114 7.93927 8.01417 8.35152 8.99348 9.57144 11.06800 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.002282 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.668726 B =12269.304946 C =12742.667972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.065 4.065 4 C -0.124 4.124 5 C 0.107 3.893 6 N -0.582 5.582 7 C 0.509 3.491 8 O -0.524 6.524 9 C 0.504 3.496 10 O -0.515 6.515 11 N -0.687 5.687 12 C 0.112 3.888 13 C -0.123 4.123 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.047 3.953 24 C -0.120 4.120 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.162 0.838 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.898 -5.835 12.320 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.163 4.163 3 C -0.084 4.084 4 C -0.162 4.162 5 C -0.015 4.015 6 N -0.316 5.316 7 C 0.292 3.708 8 O -0.400 6.400 9 C 0.285 3.715 10 O -0.394 6.394 11 N -0.337 5.337 12 C -0.010 4.010 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.074 4.074 24 C -0.158 4.158 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.178 0.822 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.873 -5.956 11.968 27.361 hybrid contribution 0.957 0.336 0.494 1.128 sum -22.916 -5.621 12.462 26.684 Atomic orbital electron populations 1.23845 0.95905 1.01785 1.01599 1.22950 0.95861 0.98199 0.99284 1.20435 0.96826 0.95715 0.95418 1.21926 0.98790 0.97519 0.97996 1.21716 0.95925 0.97259 0.86618 1.47953 1.07091 1.68058 1.08480 1.20210 0.82794 0.78197 0.89636 1.90747 1.68668 1.47333 1.33235 1.20084 0.83439 0.79169 0.88813 1.90294 1.66399 1.48026 1.34709 1.46125 1.10751 1.62878 1.13958 1.21886 0.92963 1.02417 0.83706 1.21936 0.91565 1.00241 1.02382 1.19035 0.94217 0.97706 0.90386 1.21238 0.96294 1.43968 0.94552 0.92508 1.25033 0.98846 0.95465 0.95167 1.69975 1.35325 1.48262 0.99717 0.86514 0.84587 0.78446 0.78324 1.19724 1.20994 1.20999 1.23318 0.98979 0.96653 0.88448 1.21856 0.98493 0.98097 0.97372 0.88560 0.88651 0.87413 0.90686 0.91214 0.90417 0.88724 0.91070 0.75193 0.90952 0.90917 0.92408 0.92393 0.96181 0.96172 0.92968 0.91914 0.82216 0.90477 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 14.32 29.01 0.42 -0.79 16 2 C -0.14 -0.99 8.77 -36.03 -0.32 -1.31 16 3 C -0.07 -0.47 2.43 -91.71 -0.22 -0.69 16 4 C -0.12 -0.91 5.35 -26.60 -0.14 -1.05 16 5 C 0.11 0.94 6.41 -3.71 -0.02 0.92 16 6 N -0.58 -6.44 2.97 -173.27 -0.52 -6.96 16 7 C 0.51 6.89 7.74 -11.58 -0.09 6.80 16 8 O -0.52 -8.00 15.94 5.50 0.09 -7.91 16 9 C 0.50 7.31 7.78 -11.59 -0.09 7.22 16 10 O -0.52 -8.04 13.10 5.49 0.07 -7.97 16 11 N -0.69 -10.00 5.55 -60.73 -0.34 -10.34 16 12 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.05 0.46 6.27 -3.71 -0.02 0.44 16 24 C -0.12 -1.01 5.35 -26.61 -0.14 -1.15 16 25 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 26 H 0.10 0.54 7.83 -52.49 -0.41 0.13 16 27 H 0.11 0.72 8.06 -52.48 -0.42 0.30 16 28 H 0.07 0.51 7.78 -51.92 -0.40 0.11 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.09 0.92 7.05 -51.93 -0.37 0.55 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 5.54 7.96 -40.82 -0.33 5.22 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.16 1.94 3.78 -56.75 -0.21 1.73 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -30.62 360.90 -8.07 -38.69 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.18 Total: 1.47 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.35 Total: -3.05 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.12 Total: -43.04 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.16 Total: -15.88 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.62 -8.07 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322764302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds