Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00639 * 2 1 4 4 C 1.53071 * 109.44365 * 119.79302 * 3 2 1 5 5 C 1.53192 * 109.29669 * 181.24072 * 4 3 2 6 6 N 1.46926 * 108.89029 * 305.57921 * 5 4 3 7 7 C 1.34779 * 120.62965 * 233.55576 * 6 5 4 8 8 O 1.21345 * 119.99804 * 353.07380 * 7 6 5 9 9 C 1.49450 * 119.99959 * 173.06654 * 7 6 5 10 10 O 1.21357 * 120.00090 * 353.33728 * 9 7 6 11 11 N 1.34774 * 120.00173 * 173.33642 * 9 7 6 12 12 C 1.46501 * 120.00243 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46913 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.46976 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00021 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00345 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99476 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00569 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47299 * 119.99481 * 19 17 15 22 22 H 1.48495 * 109.47200 * 239.99704 * 19 17 15 23 23 C 1.46927 * 118.74163 * 53.53736 * 6 5 4 24 24 C 1.53039 * 109.45899 * 240.00182 * 3 2 1 25 25 H 1.07998 * 120.00223 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99420 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99501 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.45335 * 359.97077 * 3 2 1 29 29 H 1.08998 * 109.39068 * 61.36173 * 4 3 2 30 30 H 1.09008 * 109.62009 * 301.25665 * 4 3 2 31 31 H 1.08995 * 109.58780 * 185.72372 * 5 4 3 32 32 H 1.09003 * 109.58422 * 65.43621 * 5 4 3 33 33 H 0.96998 * 119.99905 * 0.02562 * 11 9 7 34 34 H 1.08993 * 109.47511 * 300.00634 * 12 11 9 35 35 H 1.09003 * 109.46282 * 60.00529 * 12 11 9 36 36 H 1.09001 * 109.46957 * 300.00542 * 13 12 11 37 37 H 1.09003 * 109.46858 * 60.00317 * 13 12 11 38 38 H 1.09005 * 109.46845 * 299.99809 * 14 13 12 39 39 H 1.08998 * 109.47189 * 59.99896 * 14 13 12 40 40 H 0.97003 * 119.99726 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58946 * 66.17446 * 23 6 5 42 42 H 1.08998 * 109.59100 * 186.46270 * 23 6 5 43 43 H 1.08999 * 109.49875 * 58.67382 * 24 3 2 44 44 H 1.09001 * 109.52161 * 298.58857 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 2.9395 1.3876 1.2526 5 6 3.6803 2.7285 1.2649 6 7 4.4144 2.8779 0.0010 7 6 5.7351 3.1470 0.0016 8 8 6.3037 3.3923 1.0451 9 6 6.4991 3.1431 -1.2828 10 8 5.9605 2.7806 -2.3082 11 7 7.7863 3.5421 -1.3025 12 6 8.5354 3.5377 -2.5615 13 6 9.9614 4.0312 -2.3083 14 6 10.7435 4.0272 -3.6232 15 6 12.1481 4.5126 -3.3737 16 1 12.4524 4.7961 -2.3769 17 6 13.0445 4.5959 -4.4179 18 7 12.6738 4.2513 -5.6318 19 14 14.7858 5.1970 -4.1085 20 1 14.9496 5.5193 -2.6682 21 1 15.7513 4.1356 -4.4916 22 1 15.0408 6.4143 -4.9198 23 6 3.6816 2.7280 -1.2637 24 6 2.9434 1.3857 -1.2497 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3551 2.1334 -0.0005 29 1 3.6630 0.5724 1.2428 30 1 2.3144 1.3092 2.1422 31 1 4.3811 2.7511 2.0993 32 1 2.9620 3.5418 1.3687 33 1 8.2169 3.8314 -0.4830 34 1 8.5676 2.5244 -2.9617 35 1 8.0446 4.1960 -3.2785 36 1 9.9294 5.0445 -1.9079 37 1 10.4518 3.3725 -1.5914 38 1 10.7754 3.0139 -4.0239 39 1 10.2529 4.6860 -4.3397 40 1 13.3045 4.3095 -6.3665 41 1 2.9617 3.5398 -1.3673 42 1 4.3830 2.7530 -2.0976 43 1 2.3194 1.3044 -2.1397 44 1 3.6684 0.5719 -1.2379 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322764302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -74.749331 kcal Electronic energy + Delta-G solvation = -23091.053377 eV Core-core repulsion = 19621.918652 eV Total energy + Delta-G solvation = -3469.134724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09023 -40.03555 -38.94117 -37.23177 -35.76755 -35.13173 -33.06297 -32.22781 -31.91796 -29.04845 -27.17407 -25.52894 -24.51142 -23.67388 -22.39906 -21.83567 -20.82797 -20.51623 -18.85415 -18.47252 -18.12506 -17.23697 -16.92107 -16.44324 -16.30347 -15.99152 -15.76321 -15.61582 -15.23166 -14.99882 -14.89305 -14.35887 -14.30174 -13.78210 -13.63153 -13.46086 -13.40843 -13.06675 -12.78761 -12.62020 -12.53428 -12.37645 -12.16821 -11.84231 -11.72926 -11.70313 -11.55653 -11.43147 -11.19422 -10.55318 -10.39245 -10.31522 -9.98957 -9.83667 -8.19680 -6.30249 0.25098 1.23350 1.41590 1.42321 1.43068 1.55157 2.04319 2.39029 2.45143 3.14329 3.21722 3.72738 3.78045 3.98360 4.08152 4.11841 4.18809 4.31482 4.33918 4.43783 4.50034 4.52885 4.69608 4.75055 4.83125 4.87330 4.92035 4.95028 5.04593 5.09469 5.12719 5.15481 5.28637 5.37787 5.48812 5.53654 5.71258 5.78846 5.84832 5.89205 5.95723 6.16668 6.24251 6.65440 6.86884 6.87922 7.39067 8.92328 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.002282 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.668726 B =12269.304946 C =12742.667972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.060 4.060 4 C -0.118 4.118 5 C 0.103 3.897 6 N -0.575 5.575 7 C 0.509 3.491 8 O -0.546 6.546 9 C 0.504 3.496 10 O -0.528 6.528 11 N -0.683 5.683 12 C 0.127 3.873 13 C -0.107 4.107 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.063 0.937 17 C -0.002 4.002 18 N -0.932 5.932 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.045 3.955 24 C -0.116 4.116 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.419 0.581 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.065 0.935 38 H -0.003 1.003 39 H -0.002 1.002 40 H 0.263 0.737 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.086 0.914 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.066 -5.583 13.796 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.078 4.078 4 C -0.156 4.156 5 C -0.018 4.018 6 N -0.307 5.307 7 C 0.291 3.709 8 O -0.424 6.424 9 C 0.285 3.715 10 O -0.408 6.408 11 N -0.335 5.335 12 C 0.004 3.996 13 C -0.145 4.145 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.075 4.075 24 C -0.154 4.154 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.256 0.744 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.157 0.843 43 H 0.105 0.895 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.082 -5.714 13.463 29.034 hybrid contribution 1.204 0.224 0.008 1.224 sum -23.878 -5.490 13.471 27.960 Atomic orbital electron populations 1.24006 0.95694 1.02583 1.00129 1.22913 0.96150 0.97883 1.00607 1.20386 0.96639 0.96422 0.94369 1.21896 0.98624 0.96045 0.99044 1.21931 0.95917 0.98909 0.85023 1.48100 1.06359 1.66381 1.09877 1.19962 0.83575 0.78691 0.88662 1.90737 1.69256 1.48920 1.33489 1.20347 0.83238 0.78630 0.89249 1.90336 1.66721 1.48320 1.35382 1.45945 1.10898 1.63223 1.13401 1.21507 0.91780 1.01770 0.84518 1.21648 0.92280 1.01198 0.99347 1.18933 0.94134 0.95525 0.92689 1.21711 0.97628 1.43692 0.94898 0.91837 1.25981 1.03454 0.95653 0.94919 1.70103 1.36965 1.49498 1.00714 0.85396 0.79034 0.77871 0.78716 1.18503 1.20561 1.20525 1.23287 0.98725 0.98279 0.87206 1.21812 0.98355 0.96480 0.98730 0.87808 0.87865 0.87705 0.89585 0.92417 0.88489 0.89660 0.89036 0.74406 0.91593 0.91315 0.91464 0.91599 0.98500 0.98390 0.92795 0.90084 0.84254 0.89531 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 14.32 67.78 0.97 -0.89 16 2 C -0.16 -1.85 8.77 25.65 0.22 -1.62 16 3 C -0.06 -0.73 2.43 -11.50 -0.03 -0.76 16 4 C -0.12 -1.51 5.35 30.68 0.16 -1.34 16 5 C 0.10 1.64 6.41 86.36 0.55 2.19 16 6 N -0.57 -12.08 2.97 -820.48 -2.44 -14.52 16 7 C 0.51 13.51 7.74 87.27 0.68 14.19 16 8 O -0.55 -16.40 15.94 -3.23 -0.05 -16.45 16 9 C 0.50 14.53 7.78 87.27 0.68 15.21 16 10 O -0.53 -16.53 13.10 -3.27 -0.04 -16.57 16 11 N -0.68 -19.69 5.55 -464.40 -2.58 -22.26 16 12 C 0.13 4.22 5.67 86.38 0.49 4.71 16 13 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 18 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 19 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.05 0.85 6.27 86.37 0.54 1.39 16 24 C -0.12 -1.80 5.35 30.67 0.16 -1.64 16 25 H 0.10 0.87 8.06 -2.91 -0.02 0.85 16 26 H 0.10 0.87 7.83 -2.91 -0.02 0.84 16 27 H 0.10 1.28 8.06 -2.91 -0.02 1.25 16 28 H 0.09 0.90 7.78 -2.38 -0.02 0.88 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 1.56 7.05 -2.39 -0.02 1.54 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.42 10.99 7.96 -92.71 -0.74 10.25 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 40 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.14 3.34 3.78 -78.70 -0.30 3.04 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.62 360.90 2.59 -63.03 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.05 Total: 17.38 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.44 Total: -0.52 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -4.73 Total: -92.71 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.09 Total: -33.02 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.62 2.59 -63.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322764302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.721 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds