Wall clock time and date at job start Tue Mar 31 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47123 * 2 1 4 4 C 1.52996 * 109.47301 * 120.00076 * 2 1 3 5 5 C 1.53500 * 114.20961 * 179.97438 * 4 2 1 6 6 N 1.47065 * 87.98747 * 220.34754 * 5 4 2 7 7 C 1.34775 * 136.05574 * 207.08630 * 6 5 4 8 8 O 1.21348 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.49450 * 119.99954 * 179.97438 * 7 6 5 10 10 O 1.21348 * 120.00054 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99954 * 180.02562 * 9 7 6 12 12 C 1.46505 * 119.99989 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47002 * 184.66830 * 12 11 9 14 14 C 1.50696 * 115.55193 * 297.93943 * 13 12 11 15 15 H 1.08001 * 120.00063 * 95.21366 * 14 13 12 16 16 C 1.37879 * 119.99802 * 275.21021 * 14 13 12 17 17 N 1.31514 * 119.99885 * 7.13436 * 16 14 13 18 18 Si 1.86793 * 120.00077 * 187.13481 * 16 14 13 19 19 H 1.48507 * 109.47076 * 270.00061 * 18 16 14 20 20 H 1.48492 * 109.47293 * 30.00166 * 18 16 14 21 21 H 1.48502 * 109.47312 * 150.00186 * 18 16 14 22 22 C 1.53009 * 117.49380 * 83.60601 * 13 12 11 23 23 C 1.53000 * 117.49581 * 152.26424 * 13 12 11 24 24 C 1.47066 * 87.88492 * 27.33974 * 6 5 4 25 25 H 1.08997 * 109.47207 * 299.99703 * 1 2 3 26 26 H 1.08997 * 109.47213 * 60.00157 * 1 2 3 27 27 H 1.09008 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47033 * 239.99978 * 2 1 3 29 29 H 1.09003 * 109.47490 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47304 * 300.00204 * 3 2 1 31 31 H 1.09001 * 109.47239 * 59.99787 * 3 2 1 32 32 H 1.08998 * 113.28172 * 313.07080 * 4 2 1 33 33 H 1.09003 * 113.46822 * 105.55943 * 5 4 2 34 34 H 1.09000 * 113.51647 * 335.13472 * 5 4 2 35 35 H 0.97003 * 119.99966 * 0.02562 * 11 9 7 36 36 H 1.08996 * 109.47106 * 64.66760 * 12 11 9 37 37 H 1.08998 * 109.46754 * 304.66975 * 12 11 9 38 38 H 0.97004 * 120.00131 * 355.39941 * 17 16 14 39 39 H 1.09000 * 117.49392 * 214.99864 * 22 13 12 40 40 H 1.08997 * 117.50296 * 0.02562 * 22 13 12 41 41 H 1.09003 * 117.49927 * 359.97438 * 23 13 12 42 42 H 1.08997 * 117.49643 * 144.97660 * 23 13 12 43 43 H 1.08998 * 113.46703 * 87.44482 * 24 6 5 44 44 H 1.09005 * 113.46751 * 217.87588 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5698 -0.7852 1.3586 6 7 3.4254 -2.1651 1.8461 7 6 4.1350 -2.9941 2.6372 8 8 5.1770 -2.6168 3.1316 9 6 3.6380 -4.3776 2.9063 10 8 2.5958 -4.7547 2.4122 11 7 4.3474 -5.2064 3.6977 12 6 3.8605 -6.5628 3.9611 13 6 4.7819 -7.2481 4.9722 14 6 6.2104 -7.4322 4.5292 15 1 6.9599 -6.7058 4.8069 16 6 6.5607 -8.5280 3.7692 17 7 5.6293 -9.3366 3.3129 18 14 8.3581 -8.8642 3.3878 19 1 8.7325 -8.1797 2.1242 20 1 9.2034 -8.3534 4.4967 21 1 8.5675 -10.3269 3.2392 22 6 4.5326 -6.9708 6.4562 23 6 4.1721 -8.3342 5.8607 24 6 2.1693 -2.2446 1.0855 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5390 -0.4049 2.1640 33 1 3.9806 -0.1026 2.1026 34 1 4.0779 -0.7155 0.3969 35 1 5.1803 -4.9048 4.0930 36 1 3.8527 -7.1328 3.0321 37 1 2.8496 -6.5137 4.3657 38 1 4.7026 -9.2008 3.5657 39 1 5.4019 -6.9217 7.1119 40 1 3.7120 -6.3007 6.7121 41 1 3.1145 -8.5603 5.7252 42 1 4.8041 -9.1822 6.1244 43 1 2.3073 -2.5599 0.0513 44 1 1.3869 -2.8056 1.5968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324173122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:01 Heat of formation + Delta-G solvation = -43.676622 kcal Electronic energy + Delta-G solvation = -23695.920301 eV Core-core repulsion = 20228.132991 eV Total energy + Delta-G solvation = -3467.787311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03750 -40.63971 -39.21095 -38.73004 -35.80374 -35.11250 -33.98222 -30.63151 -28.69569 -28.27841 -27.03998 -26.68111 -25.07313 -23.23096 -22.81200 -21.67582 -20.86991 -20.50510 -19.14473 -18.39044 -18.14592 -17.26490 -16.85705 -16.35668 -16.15880 -15.70246 -15.64286 -15.37761 -15.00406 -14.67349 -14.62574 -14.32415 -14.21624 -13.78814 -13.63204 -13.43482 -13.19743 -12.89445 -12.86268 -12.79306 -12.68255 -12.25464 -12.14122 -11.95713 -11.72235 -11.55430 -11.50666 -11.29413 -10.74039 -10.63386 -10.48800 -10.33014 -10.17670 -9.96534 -8.56807 -6.32382 0.26842 1.10946 1.53731 1.60298 1.77947 2.06484 2.34660 2.55691 3.10035 3.19357 3.21960 3.39611 3.79834 3.89459 3.96466 4.14050 4.27746 4.28915 4.39034 4.44883 4.45558 4.50500 4.50777 4.55153 4.69265 4.74485 4.78217 4.81169 4.93213 5.02305 5.07618 5.12157 5.18689 5.23679 5.29281 5.34085 5.43068 5.51527 5.56961 6.09803 6.12653 6.22357 6.26916 6.60750 6.67354 6.89350 7.49471 8.83454 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.003206 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.258814 B = 8731.441792 C = 9130.419196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.098 4.098 5 C 0.106 3.894 6 N -0.627 5.627 7 C 0.534 3.466 8 O -0.550 6.550 9 C 0.499 3.501 10 O -0.550 6.550 11 N -0.670 5.670 12 C 0.171 3.829 13 C -0.025 4.025 14 C -0.583 4.583 15 H 0.047 0.953 16 C -0.016 4.016 17 N -0.927 5.927 18 Si 1.109 2.891 19 H -0.282 1.282 20 H -0.272 1.272 21 H -0.284 1.284 22 C -0.167 4.167 23 C -0.168 4.168 24 C 0.103 3.897 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.414 0.586 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 20.109 -5.977 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.205 4.205 4 C -0.117 4.117 5 C -0.015 4.015 6 N -0.362 5.362 7 C 0.318 3.682 8 O -0.428 6.428 9 C 0.279 3.721 10 O -0.429 6.429 11 N -0.320 5.320 12 C 0.048 3.952 13 C -0.026 4.026 14 C -0.620 4.620 15 H 0.065 0.935 16 C -0.217 4.217 17 N -0.563 5.563 18 Si 0.932 3.068 19 H -0.208 1.208 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.205 4.205 23 C -0.206 4.206 24 C -0.018 4.018 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.498 18.863 -6.740 21.759 hybrid contribution -0.539 0.498 1.108 1.329 sum -9.037 19.361 -5.632 22.096 Atomic orbital electron populations 1.21828 0.94239 1.02015 1.02413 1.21020 0.96481 0.96583 0.95600 1.21836 1.01289 0.94894 1.02465 1.23094 0.94087 0.93272 1.01251 1.23464 0.97880 0.79782 1.00369 1.49521 1.25751 1.16166 1.44713 1.19584 0.83233 0.85103 0.80316 1.90736 1.23517 1.76360 1.52233 1.20274 0.84802 0.86647 0.80350 1.90665 1.23891 1.77249 1.51093 1.45748 1.25817 1.13538 1.46857 1.20881 0.95680 0.80357 0.98291 1.19319 0.94975 0.99670 0.88623 1.21499 0.92369 1.10459 1.37682 0.93454 1.26962 1.08714 0.93026 0.92988 1.70815 1.02836 1.41077 1.41562 0.83016 0.70714 0.76263 0.76770 1.20796 1.19698 1.20988 1.22929 1.02165 0.98457 0.96899 1.22708 0.99458 0.92465 1.06003 1.23513 0.84054 0.97498 0.96764 0.92376 0.91684 0.92837 0.90009 0.92314 0.91710 0.92366 0.87210 0.89806 0.87470 0.74981 0.94517 0.92314 0.92251 0.89730 0.88861 0.89468 0.91284 0.88037 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.08 -0.74 2.74 -10.80 -0.03 -0.77 16 3 C -0.15 -1.18 9.00 71.98 0.65 -0.53 16 4 C -0.10 -1.36 3.48 -10.37 -0.04 -1.40 16 5 C 0.11 1.89 7.26 83.18 0.60 2.50 16 6 N -0.63 -17.10 3.69 -859.35 -3.17 -20.26 16 7 C 0.53 19.25 8.14 87.27 0.71 19.96 16 8 O -0.55 -22.22 17.25 -3.24 -0.06 -22.27 16 9 C 0.50 20.03 7.89 87.27 0.69 20.71 16 10 O -0.55 -23.11 15.19 -3.24 -0.05 -23.16 16 11 N -0.67 -28.53 5.45 -464.41 -2.53 -31.06 16 12 C 0.17 7.81 5.43 86.38 0.47 8.28 16 13 C -0.03 -1.18 0.99 -52.93 -0.05 -1.24 16 14 C -0.58 -31.21 8.44 25.60 0.22 -30.99 16 15 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 16 C -0.02 -0.88 5.39 84.66 0.46 -0.42 16 17 N -0.93 -54.43 13.57 21.45 0.29 -54.14 16 18 Si 1.11 49.94 29.91 68.60 2.05 51.99 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.17 -6.78 9.96 30.62 0.30 -6.48 16 23 C -0.17 -7.39 8.74 30.62 0.27 -7.13 16 24 C 0.10 2.13 7.20 83.27 0.60 2.73 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.54 16 28 H 0.08 0.74 7.89 -2.38 -0.02 0.72 16 29 H 0.06 0.46 7.49 -2.39 -0.02 0.45 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.41 17.80 7.70 -92.71 -0.71 17.09 16 36 H 0.04 1.90 7.82 -2.39 -0.02 1.88 16 37 H 0.06 2.50 8.11 -2.39 -0.02 2.48 16 38 H 0.27 15.61 6.19 -92.71 -0.57 15.04 16 39 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.10 1.84 7.93 -2.39 -0.02 1.82 16 44 H 0.08 1.85 7.38 -2.38 -0.02 1.83 16 Total: -1.00 -67.13 366.20 2.51 -64.62 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.47 Total: 29.75 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.51 Total: 4.54 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -5.41 Total: -105.46 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.11 Total: -45.43 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 51.99 kcal Total: -67.13 2.51 -64.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324173122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.942 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds