Wall clock time and date at job start Tue Mar 31 2020 07:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46980 * 2 1 4 4 C 1.53003 * 109.47017 * 119.99709 * 2 1 3 5 5 H 1.09002 * 112.77514 * 45.35922 * 4 2 1 6 6 C 1.53237 * 113.38541 * 274.64786 * 4 2 1 7 7 C 1.53492 * 83.43030 * 219.29530 * 6 4 2 8 8 N 1.47065 * 87.98943 * 25.89909 * 7 6 4 9 9 C 1.34773 * 136.06037 * 152.84266 * 8 7 6 10 10 O 1.21349 * 120.00100 * 175.04564 * 9 8 7 11 11 C 1.49447 * 120.00081 * 355.04726 * 9 8 7 12 12 O 1.21345 * 119.99668 * 5.05309 * 11 9 8 13 13 N 1.34775 * 119.99974 * 185.04203 * 11 9 8 14 14 C 1.46505 * 119.99870 * 175.03821 * 13 11 9 15 15 C 1.52999 * 109.47173 * 184.70546 * 14 13 11 16 16 C 1.50701 * 115.54830 * 305.36072 * 15 14 13 17 17 H 1.07997 * 119.99926 * 145.23368 * 16 15 14 18 18 C 1.37877 * 119.99802 * 325.22853 * 16 15 14 19 19 N 1.31511 * 120.00533 * 0.80460 * 18 16 15 20 20 Si 1.86802 * 119.99736 * 180.80897 * 18 16 15 21 21 H 1.48502 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47535 * 119.99795 * 20 18 16 23 23 H 1.48505 * 109.46995 * 239.99845 * 20 18 16 24 24 C 1.53004 * 117.49838 * 159.69312 * 15 14 13 25 25 C 1.52999 * 117.50015 * 91.02977 * 15 14 13 26 26 H 1.09000 * 109.47378 * 304.89929 * 1 2 3 27 27 H 1.08998 * 109.46939 * 64.90000 * 1 2 3 28 28 H 1.09000 * 109.47194 * 184.89694 * 1 2 3 29 29 H 1.09001 * 109.47302 * 239.99989 * 2 1 3 30 30 H 1.09001 * 109.47132 * 53.84580 * 3 2 1 31 31 H 1.09000 * 109.47256 * 173.84259 * 3 2 1 32 32 H 1.08999 * 109.47042 * 293.84736 * 3 2 1 33 33 H 1.08997 * 114.32551 * 105.65552 * 6 4 2 34 34 H 1.09004 * 114.01952 * 332.90833 * 6 4 2 35 35 H 1.09004 * 113.46686 * 271.12080 * 7 6 4 36 36 H 1.09004 * 113.52212 * 140.69153 * 7 6 4 37 37 H 0.96993 * 120.00283 * 355.31920 * 13 11 9 38 38 H 1.09004 * 109.47265 * 304.70751 * 14 13 11 39 39 H 1.09004 * 109.46939 * 64.70277 * 14 13 11 40 40 H 0.96998 * 120.00202 * 185.00937 * 19 18 16 41 41 H 1.09005 * 117.49596 * 359.97438 * 24 15 14 42 42 H 1.08989 * 117.49892 * 145.02171 * 24 15 14 43 43 H 1.08994 * 117.50253 * 214.98138 * 25 15 14 44 44 H 1.08999 * 117.49596 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5148 -1.6571 1.4402 6 6 2.1353 0.1872 2.4797 7 6 3.4286 -0.5973 2.7400 8 7 3.5043 -0.8516 1.2935 9 6 4.4845 -1.0923 0.4004 10 8 4.2052 -1.3567 -0.7505 11 6 5.9154 -1.0337 0.8275 12 8 6.1932 -0.8603 1.9959 13 7 6.8973 -1.1736 -0.0851 14 6 8.2972 -1.0080 0.3140 15 6 9.1943 -1.1010 -0.9219 16 6 9.0288 -2.3473 -1.7528 17 1 9.1341 -2.2984 -2.8265 18 6 8.7433 -3.5501 -1.1422 19 7 8.5996 -3.6068 0.1638 20 14 8.5606 -5.0992 -2.1700 21 1 8.7673 -4.7696 -3.6031 22 1 9.5704 -6.0999 -1.7411 23 1 7.1981 -5.6594 -1.9829 24 6 10.5973 -0.4986 -0.8234 25 6 9.5206 0.2003 -1.6575 26 1 -0.3634 0.5880 0.8428 27 1 -0.3633 0.4359 -0.9306 28 1 -0.3633 -1.0239 0.0877 29 1 1.8934 -0.5138 -0.8900 30 1 1.5895 1.9872 0.8298 31 1 3.1244 1.4446 0.1102 32 1 1.7694 1.9236 -0.9399 33 1 1.3546 0.0210 3.2220 34 1 2.2909 1.2398 2.2431 35 1 3.2772 -1.4999 3.3321 36 1 4.2443 0.0208 3.1153 37 1 6.6770 -1.3798 -1.0068 38 1 8.4279 -0.0340 0.7854 39 1 8.5689 -1.7927 1.0201 40 1 8.4710 -4.4631 0.6009 41 1 10.8810 -0.0357 0.1218 42 1 11.4005 -1.0035 -1.3599 43 1 9.6160 0.1549 -2.7423 44 1 9.0958 1.1225 -1.2611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327747709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:43 Heat of formation + Delta-G solvation = -8.779535 kcal Electronic energy + Delta-G solvation = -24616.022814 eV Core-core repulsion = 21149.748755 eV Total energy + Delta-G solvation = -3466.274059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79984 -38.91756 -37.35855 -36.63776 -34.53692 -33.07672 -32.18528 -29.72478 -27.34594 -26.70438 -25.87436 -25.46498 -23.40506 -21.61242 -21.23560 -20.12397 -19.35526 -18.44067 -17.44022 -16.51329 -16.22322 -16.03478 -15.20046 -14.95362 -14.69005 -14.52615 -14.10377 -13.64947 -13.42410 -13.23929 -13.10717 -12.70809 -12.62115 -12.44768 -12.31294 -11.80818 -11.65402 -11.44132 -11.43700 -11.13567 -11.08857 -10.99219 -10.87680 -10.74347 -10.51534 -10.27763 -10.15519 -9.68857 -9.06071 -8.91227 -8.76264 -8.64480 -8.31249 -7.97349 -6.03694 -4.21320 2.09370 2.66626 3.23606 3.33602 3.36173 3.91615 4.01220 4.29489 4.31850 4.68998 4.82859 4.87358 4.90179 5.02813 5.18979 5.27709 5.38944 5.47368 5.50287 5.52929 5.57300 5.67358 5.77546 5.80849 5.91558 5.98063 6.03036 6.08288 6.25918 6.26501 6.31942 6.50145 6.57543 6.65158 6.84619 7.02983 7.23409 7.39657 7.55209 7.72554 7.92112 8.02515 8.27753 8.49552 8.80209 8.92714 9.42666 10.87521 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004403 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.853728 B = 6358.201689 C = 6793.034838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.139 3.861 5 H 0.092 0.908 6 C -0.162 4.162 7 C 0.108 3.892 8 N -0.623 5.623 9 C 0.536 3.464 10 O -0.522 6.522 11 C 0.497 3.503 12 O -0.545 6.545 13 N -0.645 5.645 14 C 0.161 3.839 15 C 0.033 3.967 16 C -0.495 4.495 17 H 0.063 0.937 18 C 0.073 3.927 19 N -0.872 5.872 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.195 4.195 25 C -0.211 4.211 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.411 0.589 38 H 0.027 0.973 39 H 0.121 0.879 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 7.498 4.539 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.200 4.200 4 C 0.036 3.964 5 H 0.110 0.890 6 C -0.199 4.199 7 C -0.015 4.015 8 N -0.360 5.360 9 C 0.321 3.679 10 O -0.397 6.397 11 C 0.276 3.724 12 O -0.425 6.425 13 N -0.293 5.293 14 C 0.039 3.961 15 C 0.033 3.967 16 C -0.532 4.532 17 H 0.082 0.918 18 C -0.131 4.131 19 N -0.509 5.509 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.234 4.234 25 C -0.249 4.249 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.248 0.752 38 H 0.045 0.955 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.861 7.297 4.690 16.352 hybrid contribution 0.010 -1.121 -0.959 1.475 sum -13.851 6.175 3.731 15.618 Atomic orbital electron populations 1.21752 0.94469 1.01756 1.01887 1.21304 0.95806 0.96892 0.98660 1.21861 1.01408 0.95358 1.01346 1.22788 0.80453 0.97937 0.95251 0.89010 1.23680 0.98346 1.00395 0.97496 1.22947 0.97628 0.99221 0.81683 1.49433 1.06596 1.69988 1.09944 1.20253 0.86285 0.76737 0.84582 1.90719 1.83898 1.46593 1.18523 1.19671 0.85686 0.80515 0.86511 1.90644 1.83812 1.50712 1.17307 1.45589 1.06395 1.64774 1.12571 1.21274 0.77463 0.99414 0.97947 1.19220 0.92164 0.91150 0.94197 1.20582 1.48611 0.91023 0.92980 0.91844 1.25002 0.93837 0.99158 0.95079 1.69825 1.47864 1.25139 1.08070 0.86471 0.77835 0.82887 0.80531 1.19606 1.20854 1.20847 1.22943 0.94745 1.05861 0.99851 1.22965 1.06645 0.97402 0.97849 0.92543 0.92444 0.92638 0.89400 0.92380 0.92613 0.92779 0.89351 0.87976 0.89803 0.88986 0.75245 0.95466 0.86204 0.92683 0.91401 0.90082 0.90477 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.11 -1.22 2.83 -90.61 -0.26 -1.48 16 3 C -0.14 -1.56 7.98 37.16 0.30 -1.26 16 4 C 0.14 1.60 3.81 -72.53 -0.28 1.32 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.16 -1.45 7.62 -26.35 -0.20 -1.65 16 7 C 0.11 1.32 7.68 -8.52 -0.07 1.26 16 8 N -0.62 -9.64 3.11 -178.12 -0.55 -10.20 16 9 C 0.54 10.54 7.98 -11.59 -0.09 10.45 16 10 O -0.52 -11.22 16.10 5.50 0.09 -11.13 16 11 C 0.50 10.89 7.88 -11.59 -0.09 10.80 16 12 O -0.54 -12.48 15.17 5.50 0.08 -12.40 16 13 N -0.65 -14.84 5.17 -60.73 -0.31 -15.15 16 14 C 0.16 3.85 4.61 -4.04 -0.02 3.83 16 15 C 0.03 0.80 2.05 -155.66 -0.32 0.48 16 16 C -0.49 -12.84 8.32 -34.44 -0.29 -13.12 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.91 5.28 -17.82 -0.09 1.82 16 19 N -0.87 -23.52 10.22 55.43 0.57 -22.95 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.20 -4.25 9.96 -26.69 -0.27 -4.51 16 25 C -0.21 -4.45 9.93 -26.69 -0.26 -4.71 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 1.27 7.17 -51.93 -0.37 0.90 16 30 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 31 H 0.05 0.74 7.73 -51.93 -0.40 0.34 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.90 5.60 -51.93 -0.29 0.61 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.24 7.29 -51.93 -0.38 0.86 16 37 H 0.41 9.68 7.43 -40.82 -0.30 9.38 16 38 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.12 3.21 5.89 -51.93 -0.31 2.91 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.76 8.14 -51.94 -0.42 1.33 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -29.26 357.24 -8.37 -37.63 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.01 Total: 10.66 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.60 Total: 2.37 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.30 Total: -48.30 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.26 -8.37 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327747709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.848 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds