Wall clock time and date at job start Tue Mar 31 2020 07:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46980 * 2 1 4 4 C 1.53003 * 109.47017 * 119.99709 * 2 1 3 5 5 H 1.09002 * 112.77514 * 45.35922 * 4 2 1 6 6 C 1.53237 * 113.38541 * 274.64786 * 4 2 1 7 7 C 1.53492 * 83.43030 * 219.29530 * 6 4 2 8 8 N 1.47065 * 87.98943 * 25.89909 * 7 6 4 9 9 C 1.34773 * 136.06037 * 152.84266 * 8 7 6 10 10 O 1.21349 * 120.00100 * 175.04564 * 9 8 7 11 11 C 1.49447 * 120.00081 * 355.04726 * 9 8 7 12 12 O 1.21345 * 119.99668 * 5.05309 * 11 9 8 13 13 N 1.34775 * 119.99974 * 185.04203 * 11 9 8 14 14 C 1.46505 * 119.99870 * 175.03821 * 13 11 9 15 15 C 1.52999 * 109.47173 * 184.70546 * 14 13 11 16 16 C 1.50701 * 115.54830 * 305.36072 * 15 14 13 17 17 H 1.07997 * 119.99926 * 145.23368 * 16 15 14 18 18 C 1.37877 * 119.99802 * 325.22853 * 16 15 14 19 19 N 1.31511 * 120.00533 * 0.80460 * 18 16 15 20 20 Si 1.86802 * 119.99736 * 180.80897 * 18 16 15 21 21 H 1.48502 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47535 * 119.99795 * 20 18 16 23 23 H 1.48505 * 109.46995 * 239.99845 * 20 18 16 24 24 C 1.53004 * 117.49838 * 159.69312 * 15 14 13 25 25 C 1.52999 * 117.50015 * 91.02977 * 15 14 13 26 26 H 1.09000 * 109.47378 * 304.89929 * 1 2 3 27 27 H 1.08998 * 109.46939 * 64.90000 * 1 2 3 28 28 H 1.09000 * 109.47194 * 184.89694 * 1 2 3 29 29 H 1.09001 * 109.47302 * 239.99989 * 2 1 3 30 30 H 1.09001 * 109.47132 * 53.84580 * 3 2 1 31 31 H 1.09000 * 109.47256 * 173.84259 * 3 2 1 32 32 H 1.08999 * 109.47042 * 293.84736 * 3 2 1 33 33 H 1.08997 * 114.32551 * 105.65552 * 6 4 2 34 34 H 1.09004 * 114.01952 * 332.90833 * 6 4 2 35 35 H 1.09004 * 113.46686 * 271.12080 * 7 6 4 36 36 H 1.09004 * 113.52212 * 140.69153 * 7 6 4 37 37 H 0.96993 * 120.00283 * 355.31920 * 13 11 9 38 38 H 1.09004 * 109.47265 * 304.70751 * 14 13 11 39 39 H 1.09004 * 109.46939 * 64.70277 * 14 13 11 40 40 H 0.96998 * 120.00202 * 185.00937 * 19 18 16 41 41 H 1.09005 * 117.49596 * 359.97438 * 24 15 14 42 42 H 1.08989 * 117.49892 * 145.02171 * 24 15 14 43 43 H 1.08994 * 117.50253 * 214.98138 * 25 15 14 44 44 H 1.08999 * 117.49596 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5148 -1.6571 1.4402 6 6 2.1353 0.1872 2.4797 7 6 3.4286 -0.5973 2.7400 8 7 3.5043 -0.8516 1.2935 9 6 4.4845 -1.0923 0.4004 10 8 4.2052 -1.3567 -0.7505 11 6 5.9154 -1.0337 0.8275 12 8 6.1932 -0.8603 1.9959 13 7 6.8973 -1.1736 -0.0851 14 6 8.2972 -1.0080 0.3140 15 6 9.1943 -1.1010 -0.9219 16 6 9.0288 -2.3473 -1.7528 17 1 9.1341 -2.2984 -2.8265 18 6 8.7433 -3.5501 -1.1422 19 7 8.5996 -3.6068 0.1638 20 14 8.5606 -5.0992 -2.1700 21 1 8.7673 -4.7696 -3.6031 22 1 9.5704 -6.0999 -1.7411 23 1 7.1981 -5.6594 -1.9829 24 6 10.5973 -0.4986 -0.8234 25 6 9.5206 0.2003 -1.6575 26 1 -0.3634 0.5880 0.8428 27 1 -0.3633 0.4359 -0.9306 28 1 -0.3633 -1.0239 0.0877 29 1 1.8934 -0.5138 -0.8900 30 1 1.5895 1.9872 0.8298 31 1 3.1244 1.4446 0.1102 32 1 1.7694 1.9236 -0.9399 33 1 1.3546 0.0210 3.2220 34 1 2.2909 1.2398 2.2431 35 1 3.2772 -1.4999 3.3321 36 1 4.2443 0.0208 3.1153 37 1 6.6770 -1.3798 -1.0068 38 1 8.4279 -0.0340 0.7854 39 1 8.5689 -1.7927 1.0201 40 1 8.4710 -4.4631 0.6009 41 1 10.8810 -0.0357 0.1218 42 1 11.4005 -1.0035 -1.3599 43 1 9.6160 0.1549 -2.7423 44 1 9.0958 1.1225 -1.2611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327747709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:42 Heat of formation + Delta-G solvation = -26.619654 kcal Electronic energy + Delta-G solvation = -24616.796420 eV Core-core repulsion = 21149.748755 eV Total energy + Delta-G solvation = -3467.047665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02497 -40.46125 -38.91715 -38.42543 -35.48367 -34.83093 -34.16728 -30.93641 -28.42191 -28.11709 -27.53285 -26.78564 -24.78580 -23.01390 -22.63004 -21.39164 -21.20814 -19.89386 -18.83635 -18.04745 -17.89623 -17.17191 -16.78792 -16.61970 -16.32021 -15.94905 -15.60893 -15.09276 -14.79056 -14.62513 -14.31476 -14.09781 -13.96091 -13.66036 -13.37655 -13.25494 -13.16314 -12.98619 -12.63815 -12.63421 -12.51802 -12.32660 -12.16145 -12.07740 -11.91917 -11.81368 -11.52426 -11.11335 -10.97772 -10.75455 -10.42002 -10.18379 -9.90850 -9.77321 -8.02202 -6.24822 0.48905 1.31575 1.36893 1.42174 1.50464 2.27915 2.37498 2.58242 3.00962 3.36028 3.53480 3.67053 3.82826 3.93459 4.01807 4.19319 4.20808 4.37988 4.47412 4.50823 4.63368 4.66993 4.68849 4.73092 4.79029 4.81041 4.93866 4.98182 5.02680 5.06301 5.06875 5.24205 5.25125 5.27579 5.41516 5.47595 5.48884 5.56078 5.61724 5.91434 6.31650 6.38567 6.43430 6.75766 6.87583 7.16626 7.40211 8.86292 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004403 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.853728 B = 6358.201689 C = 6793.034838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.129 3.871 5 H 0.109 0.891 6 C -0.130 4.130 7 C 0.096 3.904 8 N -0.624 5.624 9 C 0.532 3.468 10 O -0.553 6.553 11 C 0.491 3.509 12 O -0.560 6.560 13 N -0.651 5.651 14 C 0.173 3.827 15 C 0.001 3.999 16 C -0.504 4.504 17 H 0.057 0.943 18 C 0.035 3.965 19 N -0.893 5.893 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.290 1.290 24 C -0.188 4.188 25 C -0.190 4.190 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.407 0.593 38 H 0.032 0.968 39 H 0.089 0.911 40 H 0.258 0.742 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 8.477 5.325 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.028 3.972 5 H 0.127 0.873 6 C -0.167 4.167 7 C -0.026 4.026 8 N -0.359 5.359 9 C 0.316 3.684 10 O -0.432 6.432 11 C 0.272 3.728 12 O -0.441 6.441 13 N -0.298 5.298 14 C 0.051 3.949 15 C 0.000 4.000 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.167 4.167 19 N -0.531 5.531 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.217 1.217 24 C -0.227 4.227 25 C -0.227 4.227 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.242 0.758 38 H 0.050 0.950 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.889 8.297 5.510 18.753 hybrid contribution 0.604 -1.369 -1.143 1.883 sum -15.286 6.928 4.367 17.341 Atomic orbital electron populations 1.21704 0.91685 1.02645 1.03057 1.21285 0.98025 0.96484 0.96905 1.21851 0.99504 0.95628 1.02686 1.23234 0.77693 0.99588 0.96663 0.87342 1.23633 0.97120 0.99552 0.96419 1.23291 0.99068 1.00466 0.79794 1.49730 1.07908 1.67226 1.11030 1.19769 0.85996 0.77670 0.84965 1.90694 1.84063 1.48737 1.19701 1.20220 0.86899 0.79571 0.86143 1.90613 1.84472 1.51216 1.17751 1.45591 1.06465 1.65265 1.12500 1.20984 0.78139 0.98360 0.97461 1.19276 0.93810 0.92007 0.94891 1.20767 1.48345 0.92121 0.92868 0.92507 1.25561 0.93926 1.01344 0.95822 1.69982 1.48915 1.25124 1.09043 0.85669 0.77183 0.80239 0.79574 1.19088 1.20438 1.21670 1.22956 0.93777 1.05288 1.00663 1.22965 1.05132 0.96549 0.98047 0.90136 0.92313 0.92131 0.93313 0.89493 0.95694 0.92659 0.84933 0.87524 0.88195 0.90543 0.75798 0.94974 0.89282 0.93193 0.90006 0.90185 0.89934 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.11 -2.30 2.83 -10.79 -0.03 -2.33 16 3 C -0.14 -2.86 7.98 71.98 0.57 -2.28 16 4 C 0.13 2.70 3.81 41.70 0.16 2.86 16 5 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 6 C -0.13 -1.83 7.62 30.84 0.24 -1.60 16 7 C 0.10 2.17 7.68 83.17 0.64 2.81 16 8 N -0.62 -19.03 3.11 -835.82 -2.60 -21.63 16 9 C 0.53 21.51 7.98 87.27 0.70 22.20 16 10 O -0.55 -24.76 16.10 -3.24 -0.05 -24.82 16 11 C 0.49 22.24 7.88 87.27 0.69 22.92 16 12 O -0.56 -26.29 15.17 -3.23 -0.05 -26.34 16 13 N -0.65 -30.95 5.17 -464.40 -2.40 -33.36 16 14 C 0.17 8.46 4.61 86.38 0.40 8.86 16 15 C 0.00 0.04 2.05 -52.93 -0.11 -0.07 16 16 C -0.50 -26.43 8.32 25.60 0.21 -26.22 16 17 H 0.06 2.99 7.81 -2.91 -0.02 2.96 16 18 C 0.03 1.84 5.28 84.66 0.45 2.29 16 19 N -0.89 -49.39 10.22 21.45 0.22 -49.17 16 20 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 C -0.19 -8.03 9.96 30.62 0.30 -7.72 16 25 C -0.19 -7.78 9.93 30.62 0.30 -7.47 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.44 7.17 -2.39 -0.02 1.42 16 30 H 0.09 1.24 6.57 -2.39 -0.02 1.23 16 31 H 0.02 0.65 7.73 -2.39 -0.02 0.63 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.47 5.60 -2.39 -0.01 1.46 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.00 7.29 -2.39 -0.02 1.98 16 37 H 0.41 19.94 7.43 -92.71 -0.69 19.25 16 38 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 39 H 0.09 4.94 5.89 -2.38 -0.01 4.93 16 40 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 41 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -65.63 357.24 2.63 -63.00 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.31 Total: 33.88 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.18 Total: 13.06 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.79 Total: -104.16 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.10 Total: -51.16 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.63 2.63 -63.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327747709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.380 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds