Wall clock time and date at job start Tue Mar 31 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46705 * 2 1 4 4 C 1.50693 * 109.47000 * 240.00248 * 2 1 3 5 5 H 1.07999 * 120.00089 * 236.99774 * 4 2 1 6 6 C 1.37884 * 120.00245 * 57.00508 * 4 2 1 7 7 N 1.31513 * 119.99970 * 5.54198 * 6 4 2 8 8 Si 1.86801 * 119.99936 * 185.54940 * 6 4 2 9 9 H 1.48496 * 109.47373 * 85.00125 * 8 6 4 10 10 H 1.48500 * 109.46717 * 204.99848 * 8 6 4 11 11 H 1.48503 * 109.46884 * 324.99262 * 8 6 4 12 12 C 1.52993 * 109.47078 * 119.99871 * 2 1 3 13 13 N 1.46501 * 109.47535 * 300.00410 * 12 2 1 14 14 C 1.34773 * 120.00022 * 180.02562 * 13 12 2 15 15 O 1.21351 * 120.00269 * 359.71720 * 14 13 12 16 16 C 1.49449 * 119.99980 * 179.72216 * 14 13 12 17 17 O 1.21346 * 120.00123 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00105 * 179.97438 * 16 14 13 19 19 C 1.50238 * 130.83819 * 359.66988 * 18 16 14 20 20 C 1.56861 * 100.58558 * 234.62667 * 19 18 16 21 21 C 1.54855 * 103.35396 * 326.65549 * 20 19 18 22 22 C 1.50236 * 130.84278 * 180.02562 * 18 16 14 23 23 C 1.55843 * 101.05542 * 233.93692 * 22 18 16 24 24 C 1.55480 * 103.32333 * 326.97377 * 23 22 18 25 25 H 1.09000 * 109.47421 * 293.92902 * 1 2 3 26 26 H 1.09003 * 109.47236 * 53.92842 * 1 2 3 27 27 H 1.09000 * 109.47168 * 173.92803 * 1 2 3 28 28 H 1.09009 * 109.46643 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47740 * 300.00200 * 3 2 1 30 30 H 1.09004 * 109.47163 * 60.00738 * 3 2 1 31 31 H 0.96999 * 120.00086 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47461 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.46818 * 60.00141 * 12 2 1 34 34 H 0.96994 * 119.99661 * 359.72624 * 13 12 2 35 35 H 1.09001 * 115.85920 * 359.66637 * 19 18 16 36 36 H 1.09001 * 110.43247 * 208.30738 * 20 19 18 37 37 H 1.09000 * 111.04571 * 85.28850 * 20 19 18 38 38 H 1.09003 * 110.62486 * 241.79038 * 21 20 19 39 39 H 1.08994 * 110.76291 * 118.83042 * 21 20 19 40 40 H 1.09001 * 115.85642 * 359.61254 * 22 18 16 41 41 H 1.09006 * 110.62609 * 85.54360 * 23 22 18 42 42 H 1.08994 * 110.63053 * 208.57058 * 23 22 18 43 43 H 1.08996 * 110.60871 * 241.57970 * 24 23 22 44 44 H 1.09005 * 110.89461 * 118.55283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6926 -1.5593 -1.1322 6 6 1.6490 -0.2763 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1439 -1.2471 -3.9992 9 1 1.1616 -2.3360 -4.2323 10 1 2.1705 -0.3439 -5.1776 11 1 3.4930 -1.8328 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5715 -1.4802 3.7808 16 6 1.3846 0.2172 4.8897 17 8 0.6903 1.2061 4.7785 18 7 1.7101 -0.2433 6.1138 19 6 2.5337 -1.4288 6.5305 20 6 1.5203 -2.1665 7.4736 21 6 0.7252 -1.0064 8.1215 22 6 1.3556 0.2666 7.4818 23 6 2.7686 0.4071 8.1239 24 6 3.5747 -0.7524 7.4732 25 1 -0.3634 0.4168 0.9393 26 1 -0.3634 0.6051 -0.8307 27 1 -0.3633 -1.0219 -0.1087 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 0.6657 1.1264 -3.4875 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.9972 0.7602 2.3564 35 1 2.9411 -2.0331 5.7200 36 1 2.0540 -2.7376 8.2332 37 1 0.8560 -2.8156 6.9030 38 1 0.8646 -1.0022 9.2026 39 1 -0.3335 -1.0771 7.8724 40 1 0.7354 1.1627 7.5091 41 1 3.2098 1.3720 7.8739 42 1 2.7139 0.2771 9.2047 43 1 3.9178 -1.4546 8.2330 44 1 4.4178 -0.3661 6.9004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328963555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:17 Heat of formation + Delta-G solvation = -53.531704 kcal Electronic energy + Delta-G solvation = -24442.179550 eV Core-core repulsion = 20973.964891 eV Total energy + Delta-G solvation = -3468.214659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99291 -39.40921 -37.76748 -36.44138 -33.39403 -31.56326 -30.88047 -30.74223 -29.66730 -26.39167 -25.72033 -25.31045 -24.10216 -22.44947 -21.67655 -19.94401 -19.52238 -18.79324 -17.61801 -16.76554 -15.97461 -15.93739 -15.76215 -15.03124 -14.84161 -14.74330 -13.85093 -13.64325 -13.37692 -13.09385 -12.89987 -12.85997 -12.59048 -12.48142 -12.21157 -12.02881 -11.66008 -11.44431 -11.41571 -11.19191 -11.03472 -10.88261 -10.87170 -10.70117 -10.38975 -10.30722 -10.20698 -9.63857 -9.48219 -9.14018 -8.99496 -8.80196 -8.58349 -8.35901 -6.02848 -4.12463 1.71520 2.41164 3.28807 3.35450 3.38215 3.50353 3.67435 4.25459 4.36828 4.43658 4.47025 4.77282 4.77702 4.94162 4.99137 5.04184 5.10682 5.22032 5.24124 5.48354 5.62760 5.66835 5.73195 5.86782 5.94194 5.97967 6.11247 6.12542 6.24047 6.47622 6.66636 6.85033 6.86058 6.94970 7.00508 7.32525 7.36729 7.55882 7.62192 7.70271 7.98696 8.01268 8.13765 8.34028 8.43602 8.87397 9.52991 10.99201 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.003269 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.807601 B = 8564.441425 C = 8838.386267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.129 3.871 13 N -0.681 5.681 14 C 0.501 3.499 15 O -0.534 6.534 16 C 0.531 3.469 17 O -0.527 6.527 18 N -0.608 5.608 19 C 0.119 3.881 20 C -0.134 4.134 21 C -0.132 4.132 22 C 0.125 3.875 23 C -0.131 4.131 24 C -0.132 4.132 25 H 0.008 0.992 26 H 0.083 0.917 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.007 0.993 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.410 0.590 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -2.380 21.203 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.007 3.993 13 N -0.332 5.332 14 C 0.280 3.720 15 O -0.412 6.412 16 C 0.315 3.685 17 O -0.403 6.403 18 N -0.344 5.344 19 C 0.017 3.983 20 C -0.172 4.172 21 C -0.170 4.170 22 C 0.023 3.977 23 C -0.170 4.170 24 C -0.170 4.170 25 H 0.027 0.973 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.248 0.752 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.637 -2.366 20.863 21.061 hybrid contribution -0.049 -0.112 -0.898 0.906 sum 1.588 -2.479 19.966 20.181 Atomic orbital electron populations 1.21827 0.97559 1.00232 0.99272 1.18380 0.92955 0.92863 0.90305 1.21872 0.98606 0.98242 1.00320 1.20930 1.29573 1.14447 0.89827 0.92354 1.24883 0.94945 0.94757 0.98824 1.69830 1.37637 1.21316 1.23360 0.86580 0.79008 0.79891 0.82338 1.20614 1.21329 1.19958 1.21919 0.98480 0.96041 0.82837 1.46230 1.50608 1.31299 1.05088 1.19905 0.82153 0.85158 0.84740 1.90616 1.38223 1.25977 1.86426 1.20068 0.80699 0.84353 0.83361 1.90747 1.37650 1.25867 1.86075 1.50322 1.50566 1.29443 1.04047 1.24394 0.90824 0.86755 0.96355 1.23137 0.98116 0.97250 0.98689 1.22926 0.99962 0.94294 0.99852 1.23725 0.96473 0.97656 0.79863 1.23040 0.94802 0.99320 0.99813 1.23043 0.97782 0.97610 0.98604 0.97267 0.89860 0.95097 0.95380 0.89429 0.97360 0.92939 0.92057 0.92002 0.75213 0.83863 0.90315 0.90949 0.90242 0.91120 0.86458 0.91079 0.90206 0.90229 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.03 37.16 0.30 -2.74 16 2 C 0.06 1.31 0.50 -155.67 -0.08 1.23 16 3 C -0.13 -3.08 8.11 37.16 0.30 -2.77 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 7 N -0.88 -23.71 9.45 55.43 0.52 -23.19 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.73 4.50 -4.04 -0.02 2.72 16 13 N -0.68 -13.07 4.90 -60.73 -0.30 -13.36 16 14 C 0.50 9.18 7.88 -11.59 -0.09 9.09 16 15 O -0.53 -10.24 14.12 5.50 0.08 -10.16 16 16 C 0.53 8.96 8.06 -11.59 -0.09 8.86 16 17 O -0.53 -9.92 17.08 5.50 0.09 -9.83 16 18 N -0.61 -8.16 2.89 -146.15 -0.42 -8.58 16 19 C 0.12 1.31 4.86 -62.21 -0.30 1.01 16 20 C -0.13 -1.16 6.50 -23.67 -0.15 -1.31 16 21 C -0.13 -1.07 6.46 -24.26 -0.16 -1.23 16 22 C 0.12 1.26 5.24 -62.83 -0.33 0.93 16 23 C -0.13 -1.06 6.49 -23.90 -0.16 -1.22 16 24 C -0.13 -1.14 6.50 -23.87 -0.16 -1.29 16 25 H 0.01 0.18 6.72 -51.93 -0.35 -0.17 16 26 H 0.08 2.10 6.25 -51.93 -0.32 1.78 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.09 2.23 6.10 -51.93 -0.32 1.91 16 30 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.41 7.83 5.63 -40.82 -0.23 7.60 16 35 H 0.14 1.86 5.86 -51.93 -0.30 1.55 16 36 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.46 7.85 -51.93 -0.41 0.06 16 43 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -28.76 343.78 -8.03 -36.79 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.86 Total: 6.10 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.30 Total: 1.40 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.20 Total: -45.14 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.76 -8.03 -36.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328963555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.742 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds