Wall clock time and date at job start Tue Mar 31 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46705 * 2 1 4 4 C 1.50693 * 109.47000 * 240.00248 * 2 1 3 5 5 H 1.07999 * 120.00089 * 236.99774 * 4 2 1 6 6 C 1.37884 * 120.00245 * 57.00508 * 4 2 1 7 7 N 1.31513 * 119.99970 * 5.54198 * 6 4 2 8 8 Si 1.86801 * 119.99936 * 185.54940 * 6 4 2 9 9 H 1.48496 * 109.47373 * 85.00125 * 8 6 4 10 10 H 1.48500 * 109.46717 * 204.99848 * 8 6 4 11 11 H 1.48503 * 109.46884 * 324.99262 * 8 6 4 12 12 C 1.52993 * 109.47078 * 119.99871 * 2 1 3 13 13 N 1.46501 * 109.47535 * 300.00410 * 12 2 1 14 14 C 1.34773 * 120.00022 * 180.02562 * 13 12 2 15 15 O 1.21351 * 120.00269 * 359.71720 * 14 13 12 16 16 C 1.49449 * 119.99980 * 179.72216 * 14 13 12 17 17 O 1.21346 * 120.00123 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00105 * 179.97438 * 16 14 13 19 19 C 1.50238 * 130.83819 * 359.66988 * 18 16 14 20 20 C 1.56861 * 100.58558 * 234.62667 * 19 18 16 21 21 C 1.54855 * 103.35396 * 326.65549 * 20 19 18 22 22 C 1.50236 * 130.84278 * 180.02562 * 18 16 14 23 23 C 1.55843 * 101.05542 * 233.93692 * 22 18 16 24 24 C 1.55480 * 103.32333 * 326.97377 * 23 22 18 25 25 H 1.09000 * 109.47421 * 293.92902 * 1 2 3 26 26 H 1.09003 * 109.47236 * 53.92842 * 1 2 3 27 27 H 1.09000 * 109.47168 * 173.92803 * 1 2 3 28 28 H 1.09009 * 109.46643 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47740 * 300.00200 * 3 2 1 30 30 H 1.09004 * 109.47163 * 60.00738 * 3 2 1 31 31 H 0.96999 * 120.00086 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47461 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.46818 * 60.00141 * 12 2 1 34 34 H 0.96994 * 119.99661 * 359.72624 * 13 12 2 35 35 H 1.09001 * 115.85920 * 359.66637 * 19 18 16 36 36 H 1.09001 * 110.43247 * 208.30738 * 20 19 18 37 37 H 1.09000 * 111.04571 * 85.28850 * 20 19 18 38 38 H 1.09003 * 110.62486 * 241.79038 * 21 20 19 39 39 H 1.08994 * 110.76291 * 118.83042 * 21 20 19 40 40 H 1.09001 * 115.85642 * 359.61254 * 22 18 16 41 41 H 1.09006 * 110.62609 * 85.54360 * 23 22 18 42 42 H 1.08994 * 110.63053 * 208.57058 * 23 22 18 43 43 H 1.08996 * 110.60871 * 241.57970 * 24 23 22 44 44 H 1.09005 * 110.89461 * 118.55283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6926 -1.5593 -1.1322 6 6 1.6490 -0.2763 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1439 -1.2471 -3.9992 9 1 1.1616 -2.3360 -4.2323 10 1 2.1705 -0.3439 -5.1776 11 1 3.4930 -1.8328 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5715 -1.4802 3.7808 16 6 1.3846 0.2172 4.8897 17 8 0.6903 1.2061 4.7785 18 7 1.7101 -0.2433 6.1138 19 6 2.5337 -1.4288 6.5305 20 6 1.5203 -2.1665 7.4736 21 6 0.7252 -1.0064 8.1215 22 6 1.3556 0.2666 7.4818 23 6 2.7686 0.4071 8.1239 24 6 3.5747 -0.7524 7.4732 25 1 -0.3634 0.4168 0.9393 26 1 -0.3634 0.6051 -0.8307 27 1 -0.3633 -1.0219 -0.1087 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 0.6657 1.1264 -3.4875 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.9972 0.7602 2.3564 35 1 2.9411 -2.0331 5.7200 36 1 2.0540 -2.7376 8.2332 37 1 0.8560 -2.8156 6.9030 38 1 0.8646 -1.0022 9.2026 39 1 -0.3335 -1.0771 7.8724 40 1 0.7354 1.1627 7.5091 41 1 3.2098 1.3720 7.8739 42 1 2.7139 0.2771 9.2047 43 1 3.9178 -1.4546 8.2330 44 1 4.4178 -0.3661 6.9004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328963555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:16 Heat of formation + Delta-G solvation = -70.474950 kcal Electronic energy + Delta-G solvation = -24442.914264 eV Core-core repulsion = 20973.964891 eV Total energy + Delta-G solvation = -3468.949373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06368 -40.68968 -39.10835 -38.20686 -35.13273 -32.82151 -32.57968 -31.39516 -30.44108 -27.99960 -27.62679 -27.24683 -25.47291 -23.09070 -22.90268 -21.07205 -20.66443 -20.46133 -18.84868 -18.15314 -17.69430 -17.14985 -16.82077 -16.63127 -16.34847 -15.99784 -15.41332 -14.97337 -14.80725 -14.26930 -14.21918 -14.10028 -14.01604 -13.53052 -13.41939 -13.27783 -13.11245 -12.71706 -12.67005 -12.61910 -12.55835 -12.29730 -12.26405 -12.14398 -11.81898 -11.65993 -11.53460 -11.30885 -11.01497 -10.77829 -10.56144 -10.42268 -10.17968 -10.01817 -8.03560 -6.19197 0.33468 1.21450 1.44314 1.46618 1.54383 2.12275 2.39655 2.50839 3.20618 3.28625 3.49736 3.70466 3.70762 4.08898 4.21829 4.24291 4.31422 4.36511 4.43718 4.44905 4.54793 4.64242 4.64872 4.89448 5.00007 5.01449 5.03985 5.04849 5.05196 5.13019 5.14590 5.22194 5.23014 5.34841 5.36818 5.46291 5.61429 5.66229 6.06126 6.11234 6.16322 6.28987 6.38139 6.66058 6.84500 6.94780 7.48467 8.96508 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.003269 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.807601 B = 8564.441425 C = 8838.386267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.145 3.855 13 N -0.683 5.683 14 C 0.500 3.500 15 O -0.544 6.544 16 C 0.527 3.473 17 O -0.557 6.557 18 N -0.607 5.607 19 C 0.102 3.898 20 C -0.127 4.127 21 C -0.123 4.123 22 C 0.113 3.887 23 C -0.122 4.122 24 C -0.125 4.125 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -3.117 23.846 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.022 3.978 13 N -0.334 5.334 14 C 0.281 3.719 15 O -0.423 6.423 16 C 0.310 3.690 17 O -0.436 6.436 18 N -0.341 5.341 19 C 0.001 3.999 20 C -0.165 4.165 21 C -0.161 4.161 22 C 0.012 3.988 23 C -0.160 4.160 24 C -0.163 4.163 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.102 -3.128 23.561 23.861 hybrid contribution -0.155 0.077 -1.635 1.645 sum 1.947 -3.051 21.926 22.223 Atomic orbital electron populations 1.21671 0.97332 0.99456 0.99356 1.18383 0.93115 0.92987 0.90569 1.21714 0.98196 0.98042 1.00050 1.21217 1.29750 1.14589 0.91156 0.92972 1.25515 0.95096 0.95533 1.01151 1.69949 1.38133 1.22100 1.23739 0.85706 0.78657 0.78661 0.79378 1.20370 1.21121 1.19731 1.21534 0.97844 0.95493 0.82902 1.46094 1.50999 1.31356 1.04994 1.20295 0.81604 0.84955 0.85084 1.90614 1.38535 1.26424 1.86741 1.19668 0.81094 0.84222 0.83969 1.90724 1.39339 1.27037 1.86523 1.50600 1.49458 1.29870 1.04160 1.24585 0.92221 0.86390 0.96694 1.23138 0.97447 0.97248 0.98644 1.22942 0.99089 0.92412 1.01677 1.24097 0.98204 0.98582 0.77927 1.23057 0.92735 0.98619 1.01626 1.23050 0.96508 0.98219 0.98567 0.95312 0.92016 0.95718 0.95787 0.91711 0.95490 0.93027 0.92776 0.92686 0.75092 0.86301 0.87081 0.92342 0.86643 0.91988 0.87012 0.91920 0.86607 0.86986 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.03 71.98 0.58 -5.05 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.73 8.11 71.98 0.58 -5.14 16 4 C -0.53 -27.93 8.01 25.60 0.20 -27.72 16 5 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 6 C 0.03 1.43 5.13 84.66 0.43 1.87 16 7 N -0.90 -48.94 9.45 21.45 0.20 -48.73 16 8 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.14 6.23 4.50 86.38 0.39 6.62 16 13 N -0.68 -26.48 4.90 -464.42 -2.27 -28.76 16 14 C 0.50 18.57 7.88 87.27 0.69 19.26 16 15 O -0.54 -21.17 14.12 -3.25 -0.05 -21.21 16 16 C 0.53 17.90 8.06 87.27 0.70 18.60 16 17 O -0.56 -21.19 17.08 -3.23 -0.06 -21.24 16 18 N -0.61 -15.79 2.89 -734.65 -2.12 -17.91 16 19 C 0.10 2.11 4.86 46.61 0.23 2.33 16 20 C -0.13 -1.83 6.50 32.58 0.21 -1.61 16 21 C -0.12 -1.58 6.46 32.20 0.21 -1.37 16 22 C 0.11 2.02 5.24 46.21 0.24 2.26 16 23 C -0.12 -1.56 6.49 32.43 0.21 -1.35 16 24 C -0.13 -1.80 6.50 32.44 0.21 -1.59 16 25 H 0.03 1.19 6.72 -2.39 -0.02 1.17 16 26 H 0.06 3.16 6.25 -2.39 -0.01 3.14 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 3.35 6.10 -2.39 -0.01 3.33 16 30 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 31 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.41 15.79 5.63 -92.71 -0.52 15.27 16 35 H 0.12 3.06 5.86 -2.39 -0.01 3.05 16 36 H 0.11 0.92 7.88 -2.39 -0.02 0.90 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 0.72 7.85 -2.39 -0.02 0.70 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.12 0.71 7.85 -2.39 -0.02 0.69 16 43 H 0.11 0.92 7.88 -2.39 -0.02 0.90 16 44 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -62.99 343.78 3.08 -59.91 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.48 Total: 23.88 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.86 Total: 9.46 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.19 Total: -95.40 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.10 Total: -42.45 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -62.99 3.08 -59.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328963555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.567 kcal (2) G-P(sol) polarization free energy of solvation -62.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds