Wall clock time and date at job start Tue Mar 31 2020 07:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 H 1.09004 * 110.91625 * 308.90478 * 3 2 1 5 5 C 1.55156 * 111.00648 * 185.00193 * 3 2 1 6 6 C 1.54322 * 102.94517 * 206.42643 * 5 3 2 7 7 N 1.47019 * 107.39997 * 22.11157 * 6 5 3 8 8 C 1.34778 * 125.64793 * 181.10533 * 7 6 5 9 9 O 1.21347 * 120.00436 * 180.02562 * 8 7 6 10 10 C 1.49456 * 119.99946 * 0.02562 * 8 7 6 11 11 O 1.21345 * 119.99907 * 354.92019 * 10 8 7 12 12 N 1.34776 * 119.99797 * 174.91938 * 10 8 7 13 13 C 1.46504 * 119.99722 * 184.91075 * 12 10 8 14 14 C 1.53000 * 109.47016 * 185.00635 * 13 12 10 15 15 C 1.50697 * 115.55107 * 275.62078 * 14 13 12 16 16 H 1.08003 * 120.00162 * 114.75568 * 15 14 13 17 17 C 1.37877 * 119.99756 * 294.75929 * 15 14 13 18 18 N 1.31513 * 120.00179 * 352.25253 * 17 15 14 19 19 Si 1.86804 * 119.99920 * 172.25016 * 17 15 14 20 20 H 1.48496 * 109.47042 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46994 * 119.99683 * 19 17 15 22 22 H 1.48495 * 109.47390 * 240.00042 * 19 17 15 23 23 C 1.53002 * 117.49892 * 129.91086 * 14 13 12 24 24 C 1.52997 * 60.00033 * 252.51412 * 23 14 13 25 25 C 1.47745 * 108.53268 * 1.18568 * 7 6 5 26 26 H 1.08996 * 109.47066 * 60.00406 * 1 2 3 27 27 H 1.09007 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46951 * 299.99460 * 1 2 3 29 29 H 1.09004 * 109.47128 * 240.00086 * 2 1 3 30 30 H 1.09000 * 109.47364 * 120.00270 * 2 1 3 31 31 H 1.08992 * 110.72085 * 88.05551 * 5 3 2 32 32 H 1.09005 * 110.71694 * 324.78430 * 5 3 2 33 33 H 1.08994 * 109.88488 * 141.61019 * 6 5 3 34 34 H 1.09003 * 109.87883 * 262.61964 * 6 5 3 35 35 H 0.96993 * 120.00266 * 4.91434 * 12 10 8 36 36 H 1.09001 * 109.47038 * 305.00704 * 13 12 10 37 37 H 1.08998 * 109.47257 * 65.00404 * 13 12 10 38 38 H 0.96995 * 119.99918 * 185.00822 * 18 17 15 39 39 H 1.09004 * 117.49711 * 0.02562 * 23 14 13 40 40 H 1.09000 * 117.49670 * 145.01585 * 23 14 13 41 41 H 1.09001 * 117.49403 * 252.51429 * 24 23 14 42 42 H 1.09003 * 117.50221 * 107.49406 * 24 23 14 43 43 H 1.09002 * 110.29094 * 216.94332 * 25 7 6 44 44 H 1.08997 * 110.43476 * 94.62515 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0225 -0.7924 5 6 3.5858 1.4859 -0.1263 6 6 3.9509 2.8218 0.5545 7 7 2.8418 3.1752 1.4525 8 6 2.7702 4.2855 2.2132 9 8 1.8026 4.4751 2.9206 10 6 3.8826 5.2833 2.1855 11 8 4.8903 5.0510 1.5506 12 7 3.7664 6.4410 2.8657 13 6 4.8084 7.4647 2.7526 14 6 4.4990 8.6154 3.7123 15 6 3.5453 9.6588 3.1900 16 1 2.5800 9.7899 3.6563 17 6 3.9050 10.4460 2.1167 18 7 5.1317 10.3946 1.6454 19 14 2.6500 11.5855 1.3320 20 1 1.3527 11.4580 2.0433 21 1 3.1289 12.9881 1.4246 22 1 2.4708 11.2168 -0.0953 23 6 5.6232 9.0853 4.6377 24 6 4.4444 8.2934 5.2070 25 6 1.8220 2.1085 1.3816 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8872 1.4917 -1.1737 32 1 4.0396 0.6473 0.4020 33 1 4.8703 2.7064 1.1284 34 1 4.0797 3.5988 -0.1991 35 1 2.9931 6.5964 3.4302 36 1 5.7747 7.0292 3.0070 37 1 4.8377 7.8419 1.7304 38 1 5.4054 10.9997 0.9386 39 1 6.5834 8.5748 4.5624 40 1 5.6733 10.1493 4.8686 41 1 3.7189 8.8366 5.8127 42 1 4.6289 7.2618 5.5068 43 1 0.8217 2.5371 1.4425 44 1 1.9740 1.3829 2.1806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330225529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:47 Heat of formation + Delta-G solvation = -54.967613 kcal Electronic energy + Delta-G solvation = -23860.291753 eV Core-core repulsion = 20392.014829 eV Total energy + Delta-G solvation = -3468.276925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49320 -38.77162 -37.59235 -36.74174 -34.35587 -33.22886 -32.07225 -30.71510 -28.62992 -27.01937 -25.61112 -24.83090 -22.70942 -21.99212 -21.22112 -20.44211 -19.59917 -19.15917 -17.63195 -16.69813 -16.31533 -16.06960 -15.47190 -15.02215 -14.71930 -14.50787 -14.11075 -13.89764 -13.78414 -13.60489 -13.26590 -12.98415 -12.87517 -12.60699 -12.52439 -12.06470 -11.78449 -11.60569 -11.49061 -11.30295 -11.00824 -10.94896 -10.90160 -10.85881 -10.77758 -10.52545 -10.31478 -9.64576 -9.16123 -9.08394 -8.75373 -8.63124 -8.32570 -8.22038 -6.11302 -4.17584 1.81224 2.56993 3.25039 3.34282 3.38056 3.60833 3.83511 4.26043 4.34786 4.38187 4.47885 4.86989 4.90872 5.04169 5.05819 5.13395 5.15853 5.24167 5.35869 5.48001 5.51508 5.65339 5.66810 5.75359 5.81077 5.84947 5.94692 5.96408 6.04857 6.19732 6.26977 6.39866 6.53016 6.63697 6.77511 7.01824 7.04357 7.27821 7.35684 7.41633 7.76032 7.82562 8.15952 8.31422 8.54170 8.83311 9.47710 10.96454 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.003442 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.240567 B = 8132.546114 C = 8535.765313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.131 4.131 6 C 0.108 3.892 7 N -0.598 5.598 8 C 0.522 3.478 9 O -0.524 6.524 10 C 0.497 3.503 11 O -0.533 6.533 12 N -0.673 5.673 13 C 0.160 3.840 14 C 0.031 3.969 15 C -0.499 4.499 16 H 0.063 0.937 17 C 0.072 3.928 18 N -0.876 5.876 19 Si 0.891 3.109 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.162 4.162 24 C -0.207 4.207 25 C 0.110 3.890 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.410 0.590 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -18.977 -3.503 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.015 4.015 7 N -0.333 5.333 8 C 0.305 3.695 9 O -0.399 6.399 10 C 0.277 3.723 11 O -0.411 6.411 12 N -0.323 5.323 13 C 0.038 3.962 14 C 0.030 3.970 15 C -0.537 4.537 16 H 0.081 0.919 17 C -0.132 4.132 18 N -0.512 5.512 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.201 4.201 24 C -0.244 4.244 25 C -0.012 4.012 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.246 0.754 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.123 -18.867 -3.714 19.666 hybrid contribution -0.846 0.840 -0.210 1.211 sum -4.969 -18.026 -3.924 19.106 Atomic orbital electron populations 1.21818 0.95584 1.01720 1.02212 1.21457 0.96103 0.94860 1.02455 1.22462 0.96026 0.96791 0.97043 0.89490 1.22809 0.95249 0.97240 1.01608 1.22151 0.89637 0.96413 0.93256 1.48313 1.21868 1.20132 1.42994 1.20256 0.87583 0.81592 0.80042 1.90741 1.33300 1.75926 1.39980 1.19816 0.87234 0.83476 0.81789 1.90701 1.30341 1.77249 1.42853 1.46024 1.26110 1.15178 1.45009 1.21230 0.87026 0.85332 1.02572 1.19058 0.97888 0.94382 0.85636 1.20505 1.01118 1.17759 1.14276 0.91865 1.24993 0.95233 0.96757 0.96236 1.69968 1.16495 1.37011 1.27707 0.86546 0.81850 0.80319 0.79419 1.19596 1.20977 1.20873 1.22718 0.91925 0.98891 1.06517 1.22904 1.03001 0.98815 0.99710 1.22447 0.92714 0.88985 0.97073 0.92589 0.92669 0.92437 0.91362 0.91561 0.89829 0.90464 0.90214 0.90373 0.75397 0.93400 0.89564 0.92783 0.91574 0.89850 0.90165 0.91360 0.90145 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.82 37.16 0.36 -0.62 16 2 C -0.11 -0.70 5.45 -26.73 -0.15 -0.85 16 3 C -0.10 -0.85 3.01 -88.47 -0.27 -1.12 16 4 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.13 -1.08 6.42 -24.90 -0.16 -1.24 16 6 C 0.11 1.32 5.48 -3.07 -0.02 1.30 16 7 N -0.60 -8.50 3.34 -170.77 -0.57 -9.07 16 8 C 0.52 9.20 7.92 -11.58 -0.09 9.11 16 9 O -0.52 -10.13 16.76 5.50 0.09 -10.04 16 10 C 0.50 9.73 7.84 -11.58 -0.09 9.64 16 11 O -0.53 -11.03 14.13 5.50 0.08 -10.95 16 12 N -0.67 -13.83 5.45 -60.73 -0.33 -14.16 16 13 C 0.16 3.69 5.53 -4.04 -0.02 3.66 16 14 C 0.03 0.74 1.32 -155.66 -0.21 0.53 16 15 C -0.50 -13.11 8.82 -34.44 -0.30 -13.42 16 16 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 17 C 0.07 1.91 5.22 -17.82 -0.09 1.82 16 18 N -0.88 -24.16 12.59 55.43 0.70 -23.46 16 19 Si 0.89 20.79 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.16 -3.64 9.88 -26.73 -0.26 -3.91 16 24 C -0.21 -4.31 9.78 -26.73 -0.26 -4.57 16 25 C 0.11 1.20 5.88 -2.35 -0.01 1.19 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 7.96 -51.93 -0.41 -0.01 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.08 1.03 7.59 -51.93 -0.39 0.64 16 34 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 35 H 0.41 8.22 7.89 -40.82 -0.32 7.89 16 36 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 37 H 0.09 2.25 7.26 -51.93 -0.38 1.87 16 38 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 39 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 44 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -29.35 362.85 -8.47 -37.82 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.31 Total: 7.10 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.57 Total: 1.54 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.20 Total: -46.69 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.17 Total: -20.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.35 -8.47 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330225529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.147 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds