Wall clock time and date at job start Tue Mar 31 2020 07:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 H 1.09004 * 110.91625 * 308.90478 * 3 2 1 5 5 C 1.55156 * 111.00648 * 185.00193 * 3 2 1 6 6 C 1.54322 * 102.94517 * 206.42643 * 5 3 2 7 7 N 1.47019 * 107.39997 * 22.11157 * 6 5 3 8 8 C 1.34778 * 125.64793 * 181.10533 * 7 6 5 9 9 O 1.21347 * 120.00436 * 180.02562 * 8 7 6 10 10 C 1.49456 * 119.99946 * 0.02562 * 8 7 6 11 11 O 1.21345 * 119.99907 * 354.92019 * 10 8 7 12 12 N 1.34776 * 119.99797 * 174.91938 * 10 8 7 13 13 C 1.46504 * 119.99722 * 184.91075 * 12 10 8 14 14 C 1.53000 * 109.47016 * 185.00635 * 13 12 10 15 15 C 1.50697 * 115.55107 * 275.62078 * 14 13 12 16 16 H 1.08003 * 120.00162 * 114.75568 * 15 14 13 17 17 C 1.37877 * 119.99756 * 294.75929 * 15 14 13 18 18 N 1.31513 * 120.00179 * 352.25253 * 17 15 14 19 19 Si 1.86804 * 119.99920 * 172.25016 * 17 15 14 20 20 H 1.48496 * 109.47042 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46994 * 119.99683 * 19 17 15 22 22 H 1.48495 * 109.47390 * 240.00042 * 19 17 15 23 23 C 1.53002 * 117.49892 * 129.91086 * 14 13 12 24 24 C 1.52997 * 60.00033 * 252.51412 * 23 14 13 25 25 C 1.47745 * 108.53268 * 1.18568 * 7 6 5 26 26 H 1.08996 * 109.47066 * 60.00406 * 1 2 3 27 27 H 1.09007 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46951 * 299.99460 * 1 2 3 29 29 H 1.09004 * 109.47128 * 240.00086 * 2 1 3 30 30 H 1.09000 * 109.47364 * 120.00270 * 2 1 3 31 31 H 1.08992 * 110.72085 * 88.05551 * 5 3 2 32 32 H 1.09005 * 110.71694 * 324.78430 * 5 3 2 33 33 H 1.08994 * 109.88488 * 141.61019 * 6 5 3 34 34 H 1.09003 * 109.87883 * 262.61964 * 6 5 3 35 35 H 0.96993 * 120.00266 * 4.91434 * 12 10 8 36 36 H 1.09001 * 109.47038 * 305.00704 * 13 12 10 37 37 H 1.08998 * 109.47257 * 65.00404 * 13 12 10 38 38 H 0.96995 * 119.99918 * 185.00822 * 18 17 15 39 39 H 1.09004 * 117.49711 * 0.02562 * 23 14 13 40 40 H 1.09000 * 117.49670 * 145.01585 * 23 14 13 41 41 H 1.09001 * 117.49403 * 252.51429 * 24 23 14 42 42 H 1.09003 * 117.50221 * 107.49406 * 24 23 14 43 43 H 1.09002 * 110.29094 * 216.94332 * 25 7 6 44 44 H 1.08997 * 110.43476 * 94.62515 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0225 -0.7924 5 6 3.5858 1.4859 -0.1263 6 6 3.9509 2.8218 0.5545 7 7 2.8418 3.1752 1.4525 8 6 2.7702 4.2855 2.2132 9 8 1.8026 4.4751 2.9206 10 6 3.8826 5.2833 2.1855 11 8 4.8903 5.0510 1.5506 12 7 3.7664 6.4410 2.8657 13 6 4.8084 7.4647 2.7526 14 6 4.4990 8.6154 3.7123 15 6 3.5453 9.6588 3.1900 16 1 2.5800 9.7899 3.6563 17 6 3.9050 10.4460 2.1167 18 7 5.1317 10.3946 1.6454 19 14 2.6500 11.5855 1.3320 20 1 1.3527 11.4580 2.0433 21 1 3.1289 12.9881 1.4246 22 1 2.4708 11.2168 -0.0953 23 6 5.6232 9.0853 4.6377 24 6 4.4444 8.2934 5.2070 25 6 1.8220 2.1085 1.3816 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8872 1.4917 -1.1737 32 1 4.0396 0.6473 0.4020 33 1 4.8703 2.7064 1.1284 34 1 4.0797 3.5988 -0.1991 35 1 2.9931 6.5964 3.4302 36 1 5.7747 7.0292 3.0070 37 1 4.8377 7.8419 1.7304 38 1 5.4054 10.9997 0.9386 39 1 6.5834 8.5748 4.5624 40 1 5.6733 10.1493 4.8686 41 1 3.7189 8.8366 5.8127 42 1 4.6289 7.2618 5.5068 43 1 0.8217 2.5371 1.4425 44 1 1.9740 1.3829 2.1806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330225529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:46 Heat of formation + Delta-G solvation = -72.683103 kcal Electronic energy + Delta-G solvation = -23861.059954 eV Core-core repulsion = 20392.014829 eV Total energy + Delta-G solvation = -3469.045126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84055 -40.09182 -38.86186 -38.50743 -35.40481 -34.68532 -34.07742 -31.58629 -29.57384 -28.63934 -27.46570 -26.06125 -23.74818 -23.08716 -22.87954 -21.33497 -21.15478 -20.73088 -19.04205 -18.06370 -17.95722 -17.43020 -16.79765 -16.54762 -16.48995 -15.81618 -15.58340 -15.20489 -14.86879 -14.51020 -14.46285 -14.33983 -13.99397 -13.67505 -13.60299 -13.49312 -13.40809 -12.96841 -12.85400 -12.76099 -12.70117 -12.36458 -12.07977 -12.05519 -11.57424 -11.55322 -11.47062 -11.43616 -11.00978 -10.69946 -10.55392 -10.13725 -10.07414 -9.85749 -8.14432 -6.25334 0.32910 1.24383 1.38644 1.43091 1.52639 2.11032 2.39989 2.48816 3.09757 3.27647 3.52677 3.57030 3.61644 3.83264 4.15941 4.25351 4.33258 4.37276 4.48441 4.50629 4.56182 4.58633 4.67802 4.70668 4.83234 4.91424 4.94010 4.97200 5.00486 5.02226 5.11377 5.22085 5.22837 5.24904 5.35376 5.39725 5.51331 5.53025 5.58937 5.77464 6.01079 6.27376 6.33625 6.65724 6.79903 6.96673 7.42246 8.93085 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.003442 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.240567 B = 8132.546114 C = 8535.765313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.094 4.094 4 H 0.085 0.915 5 C -0.118 4.118 6 C 0.100 3.900 7 N -0.591 5.591 8 C 0.521 3.479 9 O -0.547 6.547 10 C 0.496 3.504 11 O -0.547 6.547 12 N -0.675 5.675 13 C 0.179 3.821 14 C 0.005 3.995 15 C -0.510 4.510 16 H 0.058 0.942 17 C 0.028 3.972 18 N -0.903 5.903 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.166 4.166 24 C -0.178 4.178 25 C 0.102 3.898 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -21.014 -3.804 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.113 4.113 4 H 0.103 0.897 5 C -0.156 4.156 6 C -0.022 4.022 7 N -0.324 5.324 8 C 0.304 3.696 9 O -0.425 6.425 10 C 0.277 3.723 11 O -0.426 6.426 12 N -0.325 5.325 13 C 0.056 3.944 14 C 0.004 3.996 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.204 4.204 24 C -0.215 4.215 25 C -0.018 4.018 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.865 -20.944 -4.028 21.876 hybrid contribution -0.599 1.410 -0.133 1.538 sum -5.464 -19.535 -4.161 20.707 Atomic orbital electron populations 1.21834 0.95729 1.02224 1.01742 1.21436 0.95899 0.93279 1.03592 1.22452 0.96047 0.97877 0.94965 0.89708 1.22809 0.95155 0.95120 1.02476 1.22320 0.88909 0.98325 0.92611 1.48472 1.23073 1.19375 1.41515 1.19790 0.86681 0.82277 0.80901 1.90726 1.33737 1.76663 1.41398 1.20242 0.87660 0.83499 0.80923 1.90685 1.31130 1.77620 1.43142 1.45913 1.25770 1.15209 1.45616 1.20782 0.87659 0.85690 1.00299 1.19068 0.98665 0.94586 0.87311 1.20766 1.01336 1.18265 1.14439 0.92427 1.25645 0.96640 0.98278 0.96761 1.70064 1.17899 1.37839 1.28232 0.85662 0.79976 0.78736 0.78255 1.19136 1.20514 1.21095 1.22678 0.92688 0.98554 1.06472 1.22906 1.01571 0.99671 0.97375 1.22763 0.91348 0.88223 0.99494 0.92739 0.91703 0.93303 0.89769 0.90837 0.87909 0.88608 0.91042 0.91948 0.75064 0.93508 0.93182 0.92897 0.90574 0.91193 0.89534 0.89292 0.90952 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.82 71.98 0.71 -0.91 16 2 C -0.10 -0.97 5.45 30.59 0.17 -0.81 16 3 C -0.09 -1.31 3.01 -9.40 -0.03 -1.33 16 4 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 5 C -0.12 -1.61 6.42 31.78 0.20 -1.40 16 6 C 0.10 2.35 5.48 86.73 0.48 2.82 16 7 N -0.59 -16.35 3.34 -812.55 -2.71 -19.06 16 8 C 0.52 18.36 7.92 87.27 0.69 19.06 16 9 O -0.55 -21.15 16.76 -3.24 -0.05 -21.20 16 10 C 0.50 19.64 7.84 87.27 0.68 20.32 16 11 O -0.55 -22.95 14.13 -3.23 -0.05 -23.00 16 12 N -0.67 -28.06 5.45 -464.40 -2.53 -30.59 16 13 C 0.18 8.37 5.53 86.38 0.48 8.84 16 14 C 0.00 0.21 1.32 -52.93 -0.07 0.14 16 15 C -0.51 -27.04 8.82 25.60 0.23 -26.82 16 16 H 0.06 3.04 7.83 -2.91 -0.02 3.02 16 17 C 0.03 1.50 5.22 84.65 0.44 1.94 16 18 N -0.90 -50.74 12.59 21.45 0.27 -50.47 16 19 Si 0.95 43.03 29.55 68.60 2.03 45.06 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 C -0.17 -7.40 9.88 30.59 0.30 -7.09 16 24 C -0.18 -7.20 9.78 30.59 0.30 -6.90 16 25 C 0.10 2.08 5.88 86.79 0.51 2.59 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.62 7.96 -2.39 -0.02 0.60 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.02 8.04 -2.38 -0.02 1.00 16 33 H 0.07 1.80 7.59 -2.39 -0.02 1.79 16 34 H 0.06 1.66 7.69 -2.39 -0.02 1.65 16 35 H 0.41 16.65 7.89 -92.71 -0.73 15.92 16 36 H 0.05 2.16 7.87 -2.39 -0.02 2.14 16 37 H 0.05 2.70 7.26 -2.39 -0.02 2.68 16 38 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 39 H 0.08 3.20 8.06 -2.38 -0.02 3.18 16 40 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 44 H 0.09 1.53 7.91 -2.39 -0.02 1.51 16 Total: -1.00 -63.41 362.85 2.29 -61.11 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.25 Total: 27.70 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.09 Total: 10.45 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.97 Total: -100.12 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.10 Total: -44.20 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.41 2.29 -61.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330225529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.571 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds