Wall clock time and date at job start Tue Mar 31 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47088 * 2 1 4 4 H 1.09004 * 110.88620 * 51.12128 * 3 2 1 5 5 C 1.55158 * 111.00496 * 174.99662 * 3 2 1 6 6 C 1.54330 * 102.93879 * 153.61633 * 5 3 2 7 7 N 1.47014 * 107.27227 * 337.80879 * 6 5 3 8 8 C 1.34782 * 125.64970 * 178.90456 * 7 6 5 9 9 O 1.21352 * 120.00312 * 180.02562 * 8 7 6 10 10 C 1.49448 * 119.99604 * 0.02562 * 8 7 6 11 11 O 1.21345 * 120.00286 * 2.86051 * 10 8 7 12 12 N 1.34776 * 119.99829 * 182.85791 * 10 8 7 13 13 C 1.46504 * 120.00210 * 185.24554 * 12 10 8 14 14 C 1.52994 * 109.47248 * 184.49478 * 13 12 10 15 15 C 1.50701 * 115.55206 * 294.85316 * 14 13 12 16 16 H 1.07995 * 119.99686 * 119.00996 * 15 14 13 17 17 C 1.37875 * 119.99887 * 298.72865 * 15 14 13 18 18 N 1.31517 * 120.00074 * 173.16981 * 17 15 14 19 19 Si 1.86801 * 120.00099 * 353.17633 * 17 15 14 20 20 H 1.48497 * 109.47345 * 93.70460 * 19 17 15 21 21 H 1.48501 * 109.46867 * 213.70649 * 19 17 15 22 22 H 1.48501 * 109.46855 * 333.70318 * 19 17 15 23 23 C 1.53001 * 117.51533 * 80.55621 * 14 13 12 24 24 C 1.52999 * 60.00022 * 107.47728 * 23 14 13 25 25 C 1.47426 * 108.70560 * 359.16987 * 7 6 5 26 26 H 1.09000 * 109.47187 * 299.99579 * 1 2 3 27 27 H 1.08997 * 109.47299 * 59.99870 * 1 2 3 28 28 H 1.09002 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 240.00421 * 2 1 3 30 30 H 1.08997 * 109.47299 * 120.00129 * 2 1 3 31 31 H 1.09004 * 110.71720 * 35.25761 * 5 3 2 32 32 H 1.08993 * 110.87499 * 272.05262 * 5 3 2 33 33 H 1.08998 * 109.88037 * 218.38999 * 6 5 3 34 34 H 1.08999 * 110.00911 * 97.29992 * 6 5 3 35 35 H 0.97000 * 120.00252 * 5.24752 * 12 10 8 36 36 H 1.08999 * 109.46915 * 64.49345 * 13 12 10 37 37 H 1.09001 * 109.46941 * 304.50064 * 13 12 10 38 38 H 0.96993 * 120.00264 * 180.02562 * 18 17 15 39 39 H 1.08998 * 117.49665 * 214.96769 * 23 14 13 40 40 H 1.08993 * 117.49986 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.50270 * 252.50454 * 24 23 14 42 42 H 1.09009 * 117.51322 * 107.47979 * 24 23 14 43 43 H 1.09002 * 110.37078 * 142.73677 * 25 7 6 44 44 H 1.09000 * 110.36907 * 265.06161 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0220 0.7928 5 6 3.5858 1.4859 0.1263 6 6 3.9507 2.8224 -0.5535 7 7 2.8408 3.1726 -1.4518 8 6 2.7666 4.2822 -2.2133 9 8 1.7982 4.4695 -2.9201 10 6 3.8772 5.2819 -2.1872 11 8 4.8688 5.0700 -1.5205 12 7 3.7774 6.4188 -2.9041 13 6 4.9109 7.3446 -2.9708 14 6 4.5013 8.5970 -3.7482 15 6 4.1756 8.3812 -5.2037 16 1 3.1884 8.6116 -5.5760 17 6 5.1397 7.8950 -6.0611 18 7 4.8214 7.5796 -7.2976 19 14 6.8979 7.6840 -5.4665 20 1 7.0933 6.2938 -4.9824 21 1 7.8350 7.9546 -6.5863 22 1 7.1631 8.6360 -4.3580 23 6 3.7055 9.6664 -2.9972 24 6 5.1698 9.9181 -3.3622 25 6 1.8194 2.1122 -1.3768 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0396 0.6477 -0.4026 32 1 3.8900 1.4899 1.1729 33 1 4.8701 2.7074 -1.1276 34 1 4.0785 3.6008 0.1987 35 1 2.9551 6.6241 -3.3758 36 1 5.7463 6.8602 -3.4763 37 1 5.2107 7.6253 -1.9612 38 1 5.4995 7.2372 -7.9007 39 1 2.9463 10.2137 -3.5559 40 1 3.4731 9.4775 -1.9492 41 1 5.9011 9.8950 -2.5542 42 1 5.3742 10.6310 -4.1611 43 1 0.8199 2.5434 -1.4337 44 1 1.9664 1.3866 -2.1768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330225531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:50 Heat of formation + Delta-G solvation = -50.142917 kcal Electronic energy + Delta-G solvation = -24040.607507 eV Core-core repulsion = 20572.539797 eV Total energy + Delta-G solvation = -3468.067710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55136 -38.88152 -37.64855 -37.02186 -34.40051 -33.38153 -32.20487 -30.73301 -28.67205 -27.39965 -25.71808 -24.84725 -22.74973 -22.05701 -21.55852 -20.45704 -19.72436 -19.07548 -17.65667 -16.77083 -16.48541 -16.18993 -15.56811 -15.15964 -15.08250 -14.47613 -14.18928 -13.96657 -13.70593 -13.51799 -13.37690 -12.93352 -12.93287 -12.84569 -12.58272 -12.31865 -12.16529 -12.07218 -11.50516 -11.34599 -11.07566 -10.91417 -10.87378 -10.79908 -10.73573 -10.61046 -10.30730 -9.63407 -9.26813 -9.18539 -8.88072 -8.75101 -8.51091 -8.43226 -6.18276 -4.20613 1.75993 2.52551 3.24831 3.35581 3.40359 3.54404 3.76713 4.23277 4.36041 4.36785 4.46555 4.71270 4.90290 4.97931 5.02450 5.06544 5.15129 5.18354 5.23050 5.48352 5.50234 5.60613 5.64548 5.67004 5.74715 5.78524 5.83163 5.89959 5.95142 6.03855 6.08205 6.11485 6.18461 6.36467 6.44641 6.65468 6.80744 6.91475 7.07875 7.25402 7.64099 7.70013 8.09618 8.39843 8.45480 8.84755 9.44310 10.92850 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.003579 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.169903 B = 7822.102253 C = 7875.508951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.131 4.131 6 C 0.109 3.891 7 N -0.598 5.598 8 C 0.522 3.478 9 O -0.515 6.515 10 C 0.500 3.500 11 O -0.537 6.537 12 N -0.665 5.665 13 C 0.151 3.849 14 C -0.019 4.019 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.083 3.917 18 N -0.889 5.889 19 Si 0.866 3.134 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.249 1.249 23 C -0.179 4.179 24 C -0.184 4.184 25 C 0.110 3.890 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 -12.781 16.164 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.104 0.896 5 C -0.169 4.169 6 C -0.014 4.014 7 N -0.333 5.333 8 C 0.305 3.695 9 O -0.390 6.390 10 C 0.280 3.720 11 O -0.416 6.416 12 N -0.316 5.316 13 C 0.028 3.972 14 C -0.021 4.021 15 C -0.529 4.529 16 H 0.098 0.902 17 C -0.121 4.121 18 N -0.525 5.525 19 Si 0.694 3.306 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.173 1.173 23 C -0.216 4.216 24 C -0.223 4.223 25 C -0.012 4.012 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.875 -12.786 15.963 20.816 hybrid contribution 0.720 -0.067 -0.145 0.737 sum -3.155 -12.854 15.817 20.624 Atomic orbital electron populations 1.21817 0.95558 1.01760 1.02192 1.21458 0.96129 0.94832 1.02492 1.22412 0.95940 0.96813 0.97058 0.89576 1.22806 0.95301 0.97274 1.01543 1.22149 0.89709 0.96377 0.93167 1.48220 1.21773 1.20390 1.42953 1.20093 0.87450 0.81799 0.80169 1.90779 1.32942 1.76034 1.39273 1.19869 0.87264 0.83313 0.81578 1.90686 1.32083 1.77081 1.41729 1.45722 1.19111 1.18931 1.47820 1.21272 0.87421 0.89934 0.98585 1.19580 1.00913 0.85707 0.95861 1.20264 0.99906 1.44356 0.88341 0.90192 1.24932 0.98734 0.93800 0.94637 1.69895 1.34248 1.42457 1.05865 0.87050 0.85148 0.79214 0.79234 1.20458 1.21701 1.17313 1.22791 0.94653 1.05375 0.98823 1.23050 0.94200 1.02704 1.02321 1.22351 0.92622 0.89147 0.97128 0.92633 0.92385 0.92647 0.91504 0.91377 0.90437 0.89864 0.90310 0.90427 0.74320 0.92040 0.92466 0.92404 0.89449 0.90824 0.91065 0.89146 0.90072 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.81 37.16 0.36 -0.61 16 2 C -0.11 -0.71 5.45 -26.73 -0.15 -0.85 16 3 C -0.10 -0.83 2.99 -88.59 -0.26 -1.09 16 4 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.13 -1.07 6.42 -24.89 -0.16 -1.23 16 6 C 0.11 1.30 5.49 -3.07 -0.02 1.29 16 7 N -0.60 -8.55 3.33 -171.17 -0.57 -9.12 16 8 C 0.52 9.36 7.91 -11.58 -0.09 9.26 16 9 O -0.52 -10.36 16.75 5.50 0.09 -10.27 16 10 C 0.50 9.73 7.85 -11.59 -0.09 9.64 16 11 O -0.54 -10.76 14.11 5.50 0.08 -10.68 16 12 N -0.67 -13.67 5.46 -60.73 -0.33 -14.00 16 13 C 0.15 3.23 5.11 -4.04 -0.02 3.21 16 14 C -0.02 -0.43 0.85 -155.66 -0.13 -0.56 16 15 C -0.49 -13.14 9.17 -34.44 -0.32 -13.46 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.08 2.31 5.46 -17.82 -0.10 2.22 16 18 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 19 Si 0.87 21.19 24.82 -169.99 -4.22 16.97 16 20 H -0.28 -6.90 6.96 56.52 0.39 -6.50 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.25 -5.69 5.96 56.52 0.34 -5.35 16 23 C -0.18 -3.46 9.96 -26.73 -0.27 -3.73 16 24 C -0.18 -3.72 8.41 -26.73 -0.22 -3.94 16 25 C 0.11 1.22 5.85 -2.65 -0.02 1.21 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.43 7.97 -51.93 -0.41 0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.57 8.04 -51.93 -0.42 0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 34 H 0.08 0.97 7.64 -51.93 -0.40 0.57 16 35 H 0.42 8.73 7.83 -40.82 -0.32 8.41 16 36 H 0.06 1.44 4.59 -51.93 -0.24 1.20 16 37 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 43 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 44 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -30.94 354.29 -7.58 -38.52 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.27 Total: 7.65 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.48 Total: 1.34 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.13 Total: -48.88 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.22 Total: 16.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.94 -7.58 -38.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330225531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.618 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds