Wall clock time and date at job start Tue Mar 31 2020 07:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47088 * 2 1 4 4 H 1.09004 * 110.88620 * 51.12128 * 3 2 1 5 5 C 1.55158 * 111.00496 * 174.99662 * 3 2 1 6 6 C 1.54330 * 102.93879 * 153.61633 * 5 3 2 7 7 N 1.47014 * 107.27227 * 337.80879 * 6 5 3 8 8 C 1.34782 * 125.64970 * 178.90456 * 7 6 5 9 9 O 1.21352 * 120.00312 * 180.02562 * 8 7 6 10 10 C 1.49448 * 119.99604 * 0.02562 * 8 7 6 11 11 O 1.21345 * 120.00286 * 2.86051 * 10 8 7 12 12 N 1.34776 * 119.99829 * 182.85791 * 10 8 7 13 13 C 1.46504 * 120.00210 * 185.24554 * 12 10 8 14 14 C 1.52994 * 109.47248 * 184.49478 * 13 12 10 15 15 C 1.50701 * 115.55206 * 294.85316 * 14 13 12 16 16 H 1.07995 * 119.99686 * 119.00996 * 15 14 13 17 17 C 1.37875 * 119.99887 * 298.72865 * 15 14 13 18 18 N 1.31517 * 120.00074 * 173.16981 * 17 15 14 19 19 Si 1.86801 * 120.00099 * 353.17633 * 17 15 14 20 20 H 1.48497 * 109.47345 * 93.70460 * 19 17 15 21 21 H 1.48501 * 109.46867 * 213.70649 * 19 17 15 22 22 H 1.48501 * 109.46855 * 333.70318 * 19 17 15 23 23 C 1.53001 * 117.51533 * 80.55621 * 14 13 12 24 24 C 1.52999 * 60.00022 * 107.47728 * 23 14 13 25 25 C 1.47426 * 108.70560 * 359.16987 * 7 6 5 26 26 H 1.09000 * 109.47187 * 299.99579 * 1 2 3 27 27 H 1.08997 * 109.47299 * 59.99870 * 1 2 3 28 28 H 1.09002 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 240.00421 * 2 1 3 30 30 H 1.08997 * 109.47299 * 120.00129 * 2 1 3 31 31 H 1.09004 * 110.71720 * 35.25761 * 5 3 2 32 32 H 1.08993 * 110.87499 * 272.05262 * 5 3 2 33 33 H 1.08998 * 109.88037 * 218.38999 * 6 5 3 34 34 H 1.08999 * 110.00911 * 97.29992 * 6 5 3 35 35 H 0.97000 * 120.00252 * 5.24752 * 12 10 8 36 36 H 1.08999 * 109.46915 * 64.49345 * 13 12 10 37 37 H 1.09001 * 109.46941 * 304.50064 * 13 12 10 38 38 H 0.96993 * 120.00264 * 180.02562 * 18 17 15 39 39 H 1.08998 * 117.49665 * 214.96769 * 23 14 13 40 40 H 1.08993 * 117.49986 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.50270 * 252.50454 * 24 23 14 42 42 H 1.09009 * 117.51322 * 107.47979 * 24 23 14 43 43 H 1.09002 * 110.37078 * 142.73677 * 25 7 6 44 44 H 1.09000 * 110.36907 * 265.06161 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0220 0.7928 5 6 3.5858 1.4859 0.1263 6 6 3.9507 2.8224 -0.5535 7 7 2.8408 3.1726 -1.4518 8 6 2.7666 4.2822 -2.2133 9 8 1.7982 4.4695 -2.9201 10 6 3.8772 5.2819 -2.1872 11 8 4.8688 5.0700 -1.5205 12 7 3.7774 6.4188 -2.9041 13 6 4.9109 7.3446 -2.9708 14 6 4.5013 8.5970 -3.7482 15 6 4.1756 8.3812 -5.2037 16 1 3.1884 8.6116 -5.5760 17 6 5.1397 7.8950 -6.0611 18 7 4.8214 7.5796 -7.2976 19 14 6.8979 7.6840 -5.4665 20 1 7.0933 6.2938 -4.9824 21 1 7.8350 7.9546 -6.5863 22 1 7.1631 8.6360 -4.3580 23 6 3.7055 9.6664 -2.9972 24 6 5.1698 9.9181 -3.3622 25 6 1.8194 2.1122 -1.3768 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0396 0.6477 -0.4026 32 1 3.8900 1.4899 1.1729 33 1 4.8701 2.7074 -1.1276 34 1 4.0785 3.6008 0.1987 35 1 2.9551 6.6241 -3.3758 36 1 5.7463 6.8602 -3.4763 37 1 5.2107 7.6253 -1.9612 38 1 5.4995 7.2372 -7.9007 39 1 2.9463 10.2137 -3.5559 40 1 3.4731 9.4775 -1.9492 41 1 5.9011 9.8950 -2.5542 42 1 5.3742 10.6310 -4.1611 43 1 0.8199 2.5434 -1.4337 44 1 1.9664 1.3866 -2.1768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330225531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:49 Heat of formation + Delta-G solvation = -71.166937 kcal Electronic energy + Delta-G solvation = -24041.519177 eV Core-core repulsion = 20572.539797 eV Total energy + Delta-G solvation = -3468.979380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88972 -40.17667 -38.91666 -38.67803 -35.46863 -34.72933 -34.30938 -31.59945 -29.64576 -28.94691 -27.53442 -26.08850 -23.78446 -23.19910 -22.96389 -21.38756 -21.14598 -20.65677 -19.10843 -18.25916 -18.05779 -17.52145 -17.01221 -16.69598 -16.50612 -15.79136 -15.54094 -15.08052 -14.93900 -14.83788 -14.51321 -14.40123 -14.13093 -14.05401 -13.83775 -13.61449 -13.46785 -13.02764 -12.77332 -12.72286 -12.67988 -12.18920 -12.10771 -12.06041 -11.57731 -11.56076 -11.50792 -11.44957 -11.07538 -10.76425 -10.75710 -10.36056 -10.15365 -9.87490 -8.33378 -6.37973 0.28498 1.20657 1.30388 1.35699 1.47036 2.06517 2.32142 2.43912 2.94476 3.23320 3.39216 3.55498 3.60250 3.82259 3.93923 4.23375 4.24638 4.32862 4.37052 4.41296 4.45660 4.49089 4.55280 4.66699 4.70700 4.82601 4.91103 4.92945 5.00150 5.01416 5.01766 5.10550 5.18738 5.22610 5.23819 5.29933 5.39250 5.51597 5.52433 5.65159 5.98236 6.22907 6.26814 6.60720 6.69833 6.89489 7.29732 8.81647 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.003579 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.169903 B = 7822.102253 C = 7875.508951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.091 0.909 5 C -0.119 4.119 6 C 0.100 3.900 7 N -0.590 5.590 8 C 0.516 3.484 9 O -0.549 6.549 10 C 0.499 3.501 11 O -0.542 6.542 12 N -0.673 5.673 13 C 0.157 3.843 14 C -0.049 4.049 15 C -0.483 4.483 16 H 0.039 0.961 17 C 0.028 3.972 18 N -0.942 5.942 19 Si 0.922 3.078 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.218 1.218 23 C -0.159 4.159 24 C -0.173 4.173 25 C 0.100 3.900 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.265 0.735 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -13.704 19.477 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.109 0.891 5 C -0.156 4.156 6 C -0.021 4.021 7 N -0.324 5.324 8 C 0.299 3.701 9 O -0.427 6.427 10 C 0.280 3.720 11 O -0.421 6.421 12 N -0.324 5.324 13 C 0.034 3.966 14 C -0.050 4.050 15 C -0.521 4.521 16 H 0.057 0.943 17 C -0.171 4.171 18 N -0.581 5.581 19 Si 0.747 3.253 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.140 1.140 23 C -0.196 4.196 24 C -0.211 4.211 25 C -0.021 4.021 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.962 -13.726 19.338 23.898 hybrid contribution 0.338 0.192 -1.143 1.207 sum -2.625 -13.534 18.194 22.827 Atomic orbital electron populations 1.21831 0.95676 1.02203 1.01792 1.21443 0.95965 0.93465 1.03472 1.22397 0.96071 0.97721 0.94814 0.89082 1.22813 0.95093 0.95050 1.02670 1.22357 0.88561 0.98609 0.92607 1.48404 1.23007 1.19489 1.41467 1.19857 0.86726 0.82664 0.80822 1.90760 1.33860 1.77015 1.41059 1.20155 0.87619 0.83209 0.81018 1.90669 1.32406 1.77172 1.41889 1.45772 1.18807 1.19528 1.48252 1.21148 0.86960 0.89218 0.99244 1.19434 1.04522 0.87341 0.93683 1.20413 0.97911 1.42757 0.90987 0.94319 1.25698 1.02775 0.93985 0.94599 1.70039 1.35520 1.45006 1.07500 0.86159 0.80301 0.79358 0.79443 1.21188 1.22097 1.13966 1.22845 0.94285 1.02601 0.99822 1.23101 0.95411 0.99844 1.02725 1.22655 0.91428 0.88393 0.99597 0.92351 0.93527 0.91819 0.91348 0.89527 0.89208 0.87354 0.91606 0.90796 0.74827 0.94089 0.90115 0.92594 0.89914 0.87975 0.88143 0.89826 0.90836 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.81 71.98 0.71 -0.94 16 2 C -0.11 -1.02 5.45 30.59 0.17 -0.85 16 3 C -0.09 -1.22 2.99 -9.48 -0.03 -1.25 16 4 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 5 C -0.12 -1.55 6.42 31.79 0.20 -1.34 16 6 C 0.10 2.25 5.49 86.73 0.48 2.73 16 7 N -0.59 -16.49 3.33 -813.81 -2.71 -19.20 16 8 C 0.52 18.68 7.91 87.27 0.69 19.37 16 9 O -0.55 -22.68 16.75 -3.25 -0.05 -22.74 16 10 C 0.50 19.34 7.85 87.27 0.68 20.02 16 11 O -0.54 -21.21 14.11 -3.23 -0.05 -21.26 16 12 N -0.67 -27.62 5.46 -464.42 -2.54 -30.16 16 13 C 0.16 6.51 5.11 86.38 0.44 6.95 16 14 C -0.05 -2.11 0.85 -52.93 -0.04 -2.15 16 15 C -0.48 -26.43 9.17 25.60 0.23 -26.19 16 16 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 17 C 0.03 1.60 5.46 84.65 0.46 2.06 16 18 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 19 Si 0.92 43.93 24.82 68.60 1.70 45.63 16 20 H -0.28 -13.80 6.96 99.48 0.69 -13.11 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.22 -9.12 5.96 99.48 0.59 -8.53 16 23 C -0.16 -5.74 9.96 30.59 0.30 -5.43 16 24 C -0.17 -6.43 8.41 30.59 0.26 -6.17 16 25 C 0.10 2.13 5.85 86.78 0.51 2.64 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.67 7.97 -2.39 -0.02 0.65 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 1.01 8.04 -2.38 -0.02 0.99 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.66 7.64 -2.39 -0.02 1.65 16 34 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 35 H 0.42 17.70 7.83 -92.71 -0.73 16.97 16 36 H 0.04 1.87 4.59 -2.39 -0.01 1.85 16 37 H 0.08 2.95 8.06 -2.39 -0.02 2.93 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 44 H 0.08 1.57 7.90 -2.39 -0.02 1.55 16 Total: -1.00 -69.27 354.29 1.86 -67.41 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.14 Total: 29.09 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.06 Total: 9.44 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.95 Total: -107.58 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.10 Total: -44.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.70 Total: 45.63 kcal Total: -69.27 1.86 -67.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330225531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.755 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds