Wall clock time and date at job start Tue Mar 31 2020 07:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47264 * 2 1 4 4 H 1.08994 * 115.54582 * 29.33790 * 3 2 1 5 5 C 1.52995 * 117.52109 * 243.63229 * 3 2 1 6 6 C 1.52999 * 117.49793 * 175.00122 * 3 2 1 7 7 H 1.09001 * 117.49838 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49843 * 215.00860 * 6 3 2 9 9 C 1.34770 * 120.00112 * 155.00024 * 8 6 3 10 10 O 1.21349 * 120.00110 * 359.97438 * 9 8 6 11 11 C 1.49454 * 120.00173 * 180.02562 * 9 8 6 12 12 O 1.21344 * 119.99403 * 353.48103 * 11 9 8 13 13 N 1.34770 * 120.00020 * 173.48493 * 11 9 8 14 14 C 1.46924 * 120.63400 * 352.99745 * 13 11 9 15 15 C 1.53196 * 108.76675 * 126.40480 * 14 13 11 16 16 C 1.53033 * 109.31031 * 54.65728 * 15 14 13 17 17 C 1.53039 * 109.52806 * 298.61231 * 16 15 14 18 18 H 1.08995 * 109.49903 * 301.39229 * 17 16 15 19 19 C 1.50703 * 109.49715 * 181.32323 * 17 16 15 20 20 H 1.08001 * 120.00258 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99878 * 180.02562 * 19 17 16 22 22 N 1.31520 * 120.00251 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 120.00106 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47136 * 89.99269 * 23 21 19 25 25 H 1.48498 * 109.46777 * 209.99692 * 23 21 19 26 26 H 1.48501 * 109.46620 * 329.99531 * 23 21 19 27 27 C 1.46922 * 120.62891 * 173.01897 * 13 11 9 28 28 H 1.09004 * 109.47573 * 59.99324 * 1 2 3 29 29 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47142 * 299.99672 * 1 2 3 31 31 H 1.09011 * 109.47110 * 240.00553 * 2 1 3 32 32 H 1.08995 * 109.47475 * 120.00809 * 2 1 3 33 33 H 1.08995 * 117.50199 * 145.03374 * 5 3 2 34 34 H 1.09003 * 117.50102 * 0.02562 * 5 3 2 35 35 H 0.96995 * 119.99660 * 335.00299 * 8 6 3 36 36 H 1.09003 * 109.58819 * 246.20292 * 14 13 11 37 37 H 1.08998 * 109.58627 * 6.62198 * 14 13 11 38 38 H 1.09000 * 109.50940 * 294.69815 * 15 14 13 39 39 H 1.09005 * 109.48194 * 174.59958 * 15 14 13 40 40 H 1.09003 * 109.46330 * 178.59915 * 16 15 14 41 41 H 1.09005 * 109.46389 * 58.63130 * 16 15 14 42 42 H 0.96997 * 119.99893 * 180.02562 * 22 21 19 43 43 H 1.09008 * 109.59064 * 113.79969 * 27 13 11 44 44 H 1.09003 * 109.58686 * 353.37545 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1714 0.4818 5 6 2.8438 1.9082 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1956 8 7 4.0097 2.8281 0.8704 9 6 5.2313 2.8260 1.4397 10 8 5.9504 1.8548 1.3297 11 6 5.6999 4.0196 2.2075 12 8 5.0329 5.0332 2.2198 13 7 6.8632 3.9701 2.8861 14 6 7.6056 2.7080 3.0083 15 6 9.0433 2.9337 2.5298 16 6 9.6574 4.1013 3.3054 17 6 8.8530 5.3748 3.0344 18 1 8.8523 5.5839 1.9647 19 6 9.4775 6.5307 3.7726 20 1 10.3601 6.3734 4.3747 21 6 8.9219 7.7892 3.6793 22 7 7.8472 7.9809 2.9457 23 14 9.6962 9.2222 4.5938 24 1 10.7078 9.8754 3.7247 25 1 8.6439 10.2060 4.9543 26 1 10.3526 8.7243 5.8293 27 6 7.4130 5.1770 3.5183 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.7211 2.9435 -1.5337 34 1 3.0091 1.1869 -2.0161 35 1 3.4348 3.6042 0.9587 36 1 7.6129 2.3878 4.0502 37 1 7.1312 1.9440 2.3924 38 1 9.0404 3.1657 1.4648 39 1 9.6303 2.0320 2.7046 40 1 10.6887 4.2481 2.9845 41 1 9.6373 3.8792 4.3724 42 1 7.4566 8.8663 2.8798 43 1 7.4047 5.0582 4.6018 44 1 6.8116 6.0421 3.2389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330616931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:59 Heat of formation + Delta-G solvation = -43.406780 kcal Electronic energy + Delta-G solvation = -23991.549299 eV Core-core repulsion = 20523.773689 eV Total energy + Delta-G solvation = -3467.775609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57680 -38.82195 -37.63662 -36.83879 -33.99770 -33.17568 -31.76786 -31.49680 -29.74069 -26.13501 -25.01133 -24.20077 -23.41478 -21.80502 -21.39375 -20.98703 -20.09284 -18.75353 -17.30872 -16.87708 -16.27046 -15.75849 -15.33341 -15.07550 -14.77326 -14.56982 -14.51557 -13.89171 -13.74088 -13.39166 -12.99335 -12.86733 -12.77861 -12.58695 -12.39228 -12.10476 -11.79336 -11.58679 -11.42173 -11.35340 -11.30049 -10.98490 -10.70698 -10.45219 -10.33626 -10.26886 -10.03965 -9.88409 -9.22396 -9.11980 -8.92754 -8.52555 -8.41902 -7.83287 -6.02483 -4.10561 1.73322 2.60025 3.29999 3.37213 3.39813 3.42862 3.75214 3.89268 4.39802 4.41616 4.51536 4.65379 4.68990 4.86204 5.03076 5.16637 5.28194 5.40185 5.47793 5.58808 5.67120 5.69587 5.70689 5.76988 5.81773 5.92312 6.02284 6.13100 6.27133 6.39654 6.60182 6.62654 6.75332 6.86810 6.99533 7.04495 7.17546 7.22776 7.58868 7.82651 7.94816 7.98226 8.15442 8.34718 8.56225 8.93564 9.54998 11.03212 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.003288 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.169973 B = 8514.673436 C = 9218.998590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.157 4.157 4 H 0.109 0.891 5 C -0.186 4.186 6 C 0.080 3.920 7 H 0.140 0.860 8 N -0.677 5.677 9 C 0.517 3.483 10 O -0.513 6.513 11 C 0.495 3.505 12 O -0.525 6.525 13 N -0.566 5.566 14 C 0.049 3.951 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.414 0.586 36 H 0.055 0.945 37 H 0.144 0.856 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 -15.095 -5.692 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.177 4.177 4 H 0.127 0.873 5 C -0.224 4.224 6 C -0.026 4.026 7 H 0.158 0.842 8 N -0.327 5.327 9 C 0.300 3.700 10 O -0.390 6.390 11 C 0.276 3.724 12 O -0.402 6.402 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.557 4.557 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.303 -15.072 -5.778 19.705 hybrid contribution 0.213 1.328 0.533 1.446 sum -11.090 -13.744 -5.245 18.422 Atomic orbital electron populations 1.21743 0.95302 1.01637 1.02004 1.21116 0.96084 0.93543 1.02334 1.22941 0.93503 0.98911 1.02321 0.87288 1.23643 1.03567 1.03182 0.92057 1.21804 0.94164 0.91170 0.95490 0.84197 1.45223 1.16855 1.18512 1.52160 1.20805 0.81495 0.88216 0.79457 1.90291 1.53010 1.36072 1.59637 1.19700 0.83297 0.87568 0.81815 1.90757 1.54708 1.32243 1.62510 1.48441 1.19517 1.12533 1.49253 1.23092 0.93884 0.87714 1.02533 1.21857 0.95286 0.98865 1.00554 1.21669 0.99224 0.95603 0.98622 1.18978 0.89914 0.91526 0.97463 0.95253 1.21097 1.12165 0.92333 1.30114 0.92227 1.25067 0.94944 0.98905 0.95183 1.69874 1.20514 1.22789 1.38895 0.86563 0.78937 0.82215 0.80120 1.20662 1.21167 1.19880 1.22499 0.98583 0.85158 0.94893 0.92582 0.92653 0.92611 0.91539 0.91327 0.88217 0.87798 0.74923 0.92679 0.84011 0.92331 0.92262 0.93063 0.93231 0.92635 0.93322 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.87 37.15 0.37 -0.55 16 2 C -0.09 -0.64 6.22 -26.73 -0.17 -0.81 16 3 C -0.16 -1.28 5.66 -90.62 -0.51 -1.79 16 4 H 0.11 0.87 8.07 -51.93 -0.42 0.46 16 5 C -0.19 -1.57 10.10 -26.73 -0.27 -1.84 16 6 C 0.08 0.84 6.15 -67.93 -0.42 0.42 16 7 H 0.14 1.54 7.40 -51.93 -0.38 1.16 16 8 N -0.68 -8.94 5.56 -54.23 -0.30 -9.24 16 9 C 0.52 8.62 7.78 -11.59 -0.09 8.53 16 10 O -0.51 -8.81 12.67 5.50 0.07 -8.74 16 11 C 0.50 10.09 7.74 -11.59 -0.09 10.00 16 12 O -0.52 -12.00 15.94 5.50 0.09 -11.92 16 13 N -0.57 -11.93 2.97 -173.27 -0.51 -12.45 16 14 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 15 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 16 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.10 8.56 -34.44 -0.29 -14.40 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.54 11.40 55.43 0.63 -24.91 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.11 2.65 5.38 -3.71 -0.02 2.63 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 7.88 -51.92 -0.41 0.01 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.41 5.17 8.31 -40.82 -0.34 4.83 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.48 3.78 -56.76 -0.21 2.26 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.12 3.44 5.18 -51.93 -0.27 3.17 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -30.27 354.29 -8.89 -39.16 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.07 Total: 6.03 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.12 Total: 0.52 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.18 Total: -46.60 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.16 Total: -20.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.27 -8.89 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330616931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.242 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds